D14Rat25 Marker Search Result - Rat Genome Database

General

Marker: D14Rat25

Symbol:

D14Rat25

Previously known as:

R0023-B01; oxsts6206; R023-B01;

RGD ID:

35723

Expected Size:

168 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	40,793,260 - 40,793,460 (+)	MAPPER	mRatBN7.2
mRatBN7.2	14	40,793,307 - 40,793,460 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	42,442,532 - 42,442,731	NCBI	Rnor6.0
Rnor_6.0	14	42,442,579 - 42,442,731	NCBI	Rnor6.0
Rnor_5.0	14	42,238,435 - 42,238,587	UniSTS	Rnor5.0
Rnor_5.0	14	42,238,388 - 42,238,587	UniSTS	Rnor5.0
RGSC_v3.4	14	43,399,633 - 43,399,832	UniSTS	RGSC3.4
RGSC_v3.4	14	43,399,680 - 43,399,832	UniSTS	RGSC3.4
RGSC_v3.4	14	43,399,679 - 43,399,833	RGD	RGSC3.4
RGSC_v3.1	14	43,402,070 - 43,402,224	RGD
Celera	14	39,948,300 - 39,948,499	UniSTS
Celera	14	39,948,347 - 39,948,499	UniSTS
RH 2.0 Map	14	521.5	RGD
FHH x ACI Map	14	39.47	RGD
Cytogenetic Map	14		RGD

Is Marker For:

Strains: AVN/Orl BBDP/Rhw BBDR/Rhw BC/CpbU BDIX/Han BDVII/Cub BN/SsNHsd DA/PitN DON/Melb F344/Pit FHH/Eur IS/Kyo LE/Mol LH/Mav MHS/Gib MNRA/N WN/N WKY/OlaHsd WTC/Kyo LOU/CHan MNR/N MR/Pit ODU/N WF/Pit WIST/Nhg SR/Jr MNS/Gib NP9 OKA/Wsl OM/Ztm P5C PVG/Pit SD/Rij SHR/OlaHsd SHRSP/Riv WAG/RijKyo M520/N ACI/N BN-Lx/Cub LN/Mav GH/Omr NEDH/K SS/Jr COP/OlaHsd
QTLs: Pia13

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Data downloaded from Wellcome Trust, University of Oxford	Data downloaded from Wellcome Trust, University of Oxford
2.	Rat Genetic Map Data	Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3.	Electronic Transfer of SSLP Data	Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4.	UniSTS Pipeline	RGD automated pipelines
5.	RH Map Project	RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
6.	A high density integrated genetic linkage and radiation hybrid map of the laboratory rat	Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8
7.	Electronic Submission of SSLP Data Sets	Wilder R. Oct.2000. National Institute of Arthritis and Musculoskeletal and Skin Diseases, ARB Rat Genetic Database

Strains and Sequence

Sequence


Forward Primer	TCTGGCTGAACTGTGTGTGTC
Reverse Primer	CCTCTGTGTTGCCAGCTAGA

Template	TAGTGCCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCACTGGTATATATTAGTATG TTTGTGTGAATATGTGTGTGTTTCTATGTTTGGTGGTGTGTCTGACTTAACTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTAGTGTGTCTGGCTGAACTGTGTGTGTGTGTGTGTATCT GTGTGTGATGGTGTGTCTGGCTGAACTGTGTGTGTCTGCAATCTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTAGTGGTATGTCTGACTGCACTGTGTGCTTCTGACTACTTGTGTAAA CCCATTGTGTGAAGATTCTCTCTAGCTGGCAACACAGAGGCGTGGGTACCGAGCTCGAATTCGT AATCATGGTCATAGCTGTTTCCTGTGTGAAATTGNNATCCGCNCACAATTCCACACAACANACG ANCCGGAANNATAAAGTGTAAAGCCNGGGGNGNCNANNGAGNGANCNAACNCACATTAANTNNG TNGCCCANGCCCGCTTTCCAGNCGGNAAACCTGNCGNNNCANNGCNNNAANNAATCNGNCAACG CGCGGGGAGANNCGGTTTGNNTATNNNGNNCCNGGNNGT

Strain Variation

Strain, Expected Size(s)

ACI/N	166
AVN/Orl	166
BBDP/Rhw	156
BBDR/Rhw	156
BC/CpbU	156
BDIX/Han	156
BDVII/Cub	156
BN-Lx/Cub	156
BN/SsNHsd	156
COP/OlaHsd	159
DA/PitN	156
DON/Melb	166

F344/Pit	166
FHH/Eur	154
GH/Omr	156
IS/Kyo	156
LE/Mol	166
LH/Mav	166
LN/Mav	156
LOU/CHan	166
M520/N	166
MHS/Gib	156
MNR/N	156
MNRA/N	156

MNS/Gib	156
MR/Pit	156
NEDH/K	166
NP9	158
ODU/N	156
OKA/Wsl	156
OM/Ztm	166
P5C	156
PVG/Pit	156
SD/Rij	156
SHR/OlaHsd	156
SHRSP/Riv	156

SR/Jr	156
SS/Jr	156
WAG/RijKyo	156
WF/Pit	156
WIST/Nhg	156
WKY/OlaHsd	156
WN/N	166
WTC/Kyo	156

Region

Nucleotide Sequences


GenBank Nucleotide	CH473981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
634352	Apr6	Acute phase response QTL 6	3.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	14	1	41131407	Rat
1581500	Renag1	Renal agenesis QTL 1			kidney development trait (VT:0000527)	percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)	14	8170668	68298175	Rat
1358296	Ael3	Aortic elastin QTL 3	3.7	0.00051	aorta elastin amount (VT:0003905)	aortic elastin	14	8267090	53267090	Rat
2302045	Pia39	Pristane induced arthritis QTL 39	4.9	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G2a level (CMO:0002116)	14	8267090	53267090	Rat
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11030622	95876975	Rat
71117	Niddm17	Non-insulin dependent diabetes mellitus QTL 17	2.35		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	14	17593761	42336881	Rat
631262	Tcas4	Tongue tumor susceptibility QTL 4	7.29		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	14	17622561	42337007	Rat
2313397	Coatc1	Coat color QTL1			coat/hair pigmentation trait (VT:0010463)	coat/hair color measurement (CMO:0001808)	14	18541332	63541332	Rat
61420	Pia6	Pristane induced arthritis QTL 6	4.9		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	14	18631345	42337007	Rat
10755459	Coatc15	Coat color QTL 15		0.01681	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	14	19836944	64836944	Rat
70187	Pancm5	Pancreatic morphology QTL 5	16.7		pancreas mass (VT:0010144)	pancreas weight to body weight ratio (CMO:0000630)	14	30320092	80829842	Rat
1300154	Bp189	Blood pressure QTL 189	3.04		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	14	30883777	68757901	Rat
2313048	Bss84	Bone structure and strength QTL 84	3.1	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	14	37669719	82669719	Rat
2313084	Bss83	Bone structure and strength QTL 83	2.9	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	14	37669719	82669719	Rat
2313089	Bss81	Bone structure and strength QTL 81	3.4	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	14	37669719	82669719	Rat
2313100	Bss82	Bone structure and strength QTL 82	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	14	37669719	82669719	Rat
738037	Hcas6	Hepatocarcinoma susceptibility QTL 6	2.93		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	14	39057237	83368335	Rat
70214	Niddm28	Non-insulin dependent diabetes mellitus QTL 28	4.06		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	39998251	75582726	Rat
631523	Pia13	Pristane induced arthritis QTL 13	3.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	40793460	98037301	Rat

Additional Information

RGD Curation Notes

Note Type	Note	Reference

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	369092	UniSTS
UniSTS	118366	UniSTS

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Marker: D14Rat25