D17Rat51 Marker Search Result - Rat Genome Database

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Marker: D17Rat51

Symbol: D17Rat51
Previously known as: R0023-A10; oxsts6391; R023-A10; 
RGD ID: 35719
Expected Size: 131 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21785,119,450 - 85,119,583 (-)MAPPERmRatBN7.2
Rnor_6.01790,012,592 - 90,012,722NCBIRnor6.0
Rnor_5.01791,677,997 - 91,678,127UniSTSRnor5.0
RGSC_v3.41796,587,775 - 96,587,905UniSTSRGSC3.4
RGSC_v3.41796,587,774 - 96,587,905RGDRGSC3.4
RGSC_v3.11796,598,608 - 96,598,738RGD
Celera1783,775,845 - 83,775,971UniSTS
RH 3.4 Map17848.7RGD
RH 3.4 Map17848.7UniSTS
RH 2.0 Map17730.2RGD
SHRSP x BN Map1747.5399RGD
FHH x ACI Map1768.73RGD
Cytogenetic Map17q12.3UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd   LEW.SS-(D17Rat15-D17Rat51)/Ayd   LEW.SS-(D7Rat27-D7Mgh1)(D17Rat15-D17Rat51)/Ayd   LEW.SS-(D7Rat27-D7Mgh1)(D17Rat15-D17Rat51)(D10Mgh6-D10Mgh1)/Ayd   WKY.F344-(D17Got91-D17Rat51)/Tja   WKY.F344-(D17Rat47-D17Rat51)/Tja   WKY.F344-(D17Rat131-D17Rat51)/Tja  
QTLs:   Bw141  
Genes:   Abi1  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer TCCCACTGGTCAATCCATTT
Reverse Primer ACATGCAGACAGAACATTCCT
 
Template 
AGTGCCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCACTCTGGTGCAAAAAGGCCA
CTGAGTAGCTGAGCAGTTAGAGCCACTCAGGCAGAGTCCTAAGCCATGGAATAGGAAAAAGAGA
AGATGGAGACTACTAAGCTGAACTACACGGAGCACACCACTTACTCAATGACCCACAACATAAA
TACTACACATGTGAGTGGAAGCACTATAAGGATCCCACTGGTCAATCCATTTAAGATAAAGCAT
AAGGCAGATTTACATTCGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTAAAATTTTTGTAAAAAAAAATAGGAATGTTCTGTCTGCATGTGGGTACCGAGCTCGAAT
TCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACA
TACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTACTCACATNAATT
GCNTTGCCTCACTGCCGCTTTCAGTCGGANCTGTCGTGCCACTGATNAATGATNGCACGCCGGG
ANAGNGTTCGTATGNGNCCANGTGTTTTCTTTCC

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
621008Abi1abl-interactor 1178509883785179829Rat

Nucleotide Sequences
GenBank Nucleotide JH619115.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358295Aocep1Aortic cell protein QTL 16.10.00000071thoracic aorta cellular protein amount (VT:0010598)aortic cell percentage174099000585990005Rat
7411575Bw140Body weight QTL 14030.20.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
8694181Bw151Body weight QTL 1514.360.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
2317038Ginf3Gastrointestinal inflammation QTL 32.890.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)174992015486533673Rat
2303580Gluco49Glucose level QTL 492blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)175004027186533673Rat
4889894Eae33Experimental allergic encephalomyelitis QTL 335.20.0001nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)175090909986022412Rat
2317045Aia11Adjuvant induced arthritis QTL 114.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)176078142686533673Rat
7411577Bw141Body weight QTL 1410.001body mass (VT:0001259)body weight gain (CMO:0000420)176261951686533673Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 79249 UniSTS
UniSTS 119329 UniSTS