D6Rat51 Marker Search Result - Rat Genome Database

Symbol:

D6Rat51

Previously known as:

R0017-A06; oxsts7299; R017-A06;

RGD ID:

35447

Expected Size:

170 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	6	46,427,347 - 46,427,450	NCBI	Rnor6.0
Rnor_5.0	6	55,140,996 - 55,141,099	UniSTS	Rnor5.0
RGSC_v3.4	6	44,926,594 - 44,926,971	RGD	RGSC3.4
RGSC_v3.4	6	44,926,735 - 44,926,909	UniSTS	RGSC3.4
RGSC_v3.1	6	44,929,861 - 44,930,035	RGD
Celera	6	43,051,809 - 43,051,983	UniSTS
RH 3.4 Map	6	271.7	UniSTS
RH 3.4 Map	6	271.7	RGD
RH 2.0 Map	6	433.4	RGD
FHH x ACI Map	6	33.6999	RGD

Is Marker For:

Strains: AVN/Orl BBDP/Rhw BBDR/Rhw BC/CpbU BDIX/Han BDVII/Cub BN/SsNHsd BP/Cub BUF/Pit DA/PitN DON/Melb F344/Pit FHH/Eur IS/Kyo LE/Mol LEW/Pit LH/Mav MHS/Gib MNRA/N WN/N WKY/OlaHsd WTC/Kyo LOU/CHan MNR/N MR/Pit ODU/N WF/Pit WIST/Nhg SR/Jr MNS/Gib NP9 OKA/Wsl OM/Ztm SD/Rij SHR/OlaHsd SHRSP/Riv WAG/RijKyo GK/KyoSwe M520/N ACI/N BN-Lx/Cub LN/Mav NEDH/K SS/Jr COP/OlaHsd

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Data downloaded from Wellcome Trust, University of Oxford	Data downloaded from Wellcome Trust, University of Oxford
2.	High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence.	Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3.	Rat Genetic Map Data	Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4.	Electronic Transfer of SSLP Data	Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5.	UniSTS Pipeline	RGD automated pipelines
6.	RH Map Project	RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7.	A high density integrated genetic linkage and radiation hybrid map of the laboratory rat	Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence


Forward Primer	CACCTGACATCAACCTCAGG
Reverse Primer	GGCTGACTCCACTGTGTGTG

Template	GCCAGTGCCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCCTGCAGCCCTCTGCTGG GACCACAGAGACAGGAGGGTCCCTGAGTCCCACTGACCAGCCAGTCTAGACAAATCAGTGAAGT CCAGATTGAATGAGAGACCCTGTCACAAAACTAAGTAGGGGGTGAGCAATGGAGGAGGACACCT GACATCAACCTCAGGACTCCATATACACATACACAAGCACACATGTGAGCGTATACCAGCACAC ACTGCATACACACCCACAGGCACACACACACACACACACACACACACACACACACAAACACACA CAGAGGCACACGTGCACCTACACACACAGTGGAGTCAGCCCTTGAGTTCATTTAGTATCTACTG GAGCCTCTGACCGTGTGCCTACCTTCACTCCAGAGGAGGGGTACCGAGCTCGAATTCGTAATCA TGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCGG AAGCATAAAGTGTAAGCCTGGGGTGCTAATGAGTGAC

Strain Variation

Strain, Expected Size(s)

Region

Nucleotide Sequences


GenBank Nucleotide	CH473947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CM000236	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Additional Information

External Database Links

Database	Acc Id	Source(s)
UniSTS	118981	UniSTS

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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