| 619616 | Bp79 | Blood pressure QTL 79 | | .0292 | Blood pressure | systolic | 4 | 456799 | 78039637 | Rat |
| 2303168 | Bp330 | Blood pressure QTL 330 | 4.25 | .017 | Blood pressure | | 4 | 456799 | 149181446 | Rat |
| 2302371 | Stl22 | Serum triglyceride level QTL 22 | 5.15 | | Lipid level | triglyceride | 4 | 460493 | 55370202 | Rat |
| 1358203 | Stl19 | Serum triglyceride level QTL 19 | 2.8 | .002 | Lipid level | triglyceride | 4 | 460493 | 64750077 | Rat |
| 631642 | Stl2 | Serum triglyceride level QTL 2 | 3.3 | | Lipid level | triglyceride | 4 | 461376 | 54828069 | Rat |
| 631261 | Tcas3 | Tongue tumor susceptibility QTL 3 | 6 | | Tongue tumor susceptibility | | 4 | 6179441 | 91330582 | Rat |
| 2316958 | Gluco58 | Glucose level QTL 58 | 10 | | Glucose level | postprandial | 4 | 6690606 | 185398530 | Rat |
| 6478724 | Anxrr35 | Anxiety related response QTL 35 | | .00449 | Anxiety response | | 4 | 6913861 | 51913861 | Rat |
| 6478766 | Anxrr47 | Anxiety related response QTL 47 | | .09637 | Anxiety response | open field inner locomotion | 4 | 6913861 | 51913861 | Rat |
| 6478769 | Anxrr48 | Anxiety related response QTL 48 | | .02514 | Anxiety response | response in light-dark box | 4 | 6913861 | 51913861 | Rat |
| 1358352 | Srcrt3 | Stress Responsive Cort QTL 3 | 2.29 | | Hypothalamic-pituitary-adrenal axis | corticosterone post-stress | 4 | 8819982 | 149560340 | Rat |
| 2303585 | Bw86 | Body weight QTL 86 | 4 | | Body weight | | 4 | 11706134 | 56706134 | Rat |
| 61412 | Pia2 | Pristane induced arthritis QTL 2 | 3.9 | | Joint/bone inflammation | day of onset | 4 | 17617956 | 60974511 | Rat |
| 6909122 | Insul22 | Insulin level QTL 22 | 4.63 | | Insulin level | fasting | 4 | 23537363 | 74625985 | Rat |
| 6909128 | Pancm4 | Pancreatic morphology QTL 4 | 11.35 | | Pancreas weight | | 4 | 23537363 | 74625985 | Rat |
| 2313401 | Anxrr27 | Anxiety related response QTL 27 | | | Anxiety response | domestication | 4 | 32648616 | 61646915 | Rat |
| 61475 | Aia2 | Adjuvant induced arthritis QTL 2 | 5.8 | | Joint/bone inflammation | arthritis severity | 4 | 36592628 | 73972591 | Rat |
| 1331807 | Rf31 | Renal function QTL 31 | 2.988 | | Renal function | urine potassium concentration | 4 | 36611842 | 73752590 | Rat |
| 1300139 | Hrtrt6 | Heart rate QTL 6 | 2.85 | | Heart rate | salt-loaded | 4 | 36611842 | 117887968 | Rat |
| 61445 | Strs3 | Sensitivity to stroke QTL 3 | 3 | | Stroke susceptibility | latency until stroke | 4 | 39146794 | 84146794 | Rat |
| 1576305 | Emca6 | Estrogen-induced mammary cancer QTL 6 | 5.8 | | Mammary tumor susceptibility | estradiol-induced | 4 | 41729583 | 159115617 | Rat |
| 1354612 | Foco1 | Food consumption QTL 1 | 8.87 | | Consumption level | food intake | 4 | 41729771 | 151158666 | Rat |
| 1354660 | Salc1 | Saline consumption QTL 1 | 11.26 | | Consumption level | saline intake | 4 | 41729771 | 151158666 | Rat |
| 6893678 | Bw108 | Body weight QTL 108 | 2.6 | .006 | Body weight | salt-loaded | 4 | 42249950 | 87249950 | Rat |
| 2312567 | Glom19 | Glomerulus QTL 19 | 1.9 | .006 | Renal pathology | | 4 | 43686352 | 149560340 | Rat |
| 1298082 | Stresp4 | Stress response QTL 4 | | | Hormone level | corticosterone | 4 | 47889730 | 149560340 | Rat |