STS-T82277 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: STS-T82277

Symbol: STS-T82277
Previously known as:
RGD ID: 2156690
Expected Size: 164 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37173,505,217 - 3,505,379UniSTSGRCh37
Build 36173,451,966 - 3,452,128RGDNCBI36
Celera173,518,934 - 3,519,096RGD
Cytogenetic Map17p13.2UniSTS
HuRef173,396,970 - 3,397,132UniSTS
GeneMap99-GB4 RH Map1739.58UniSTS
Is Marker For: Genes:   TRPV1  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GGAACTTCAACCAATGCG
Reverse Primer TGAACTCTTACTGAGGTCTGATG
 

Region

Nucleotide Sequences
GenBank Nucleotide AC027796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF168787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH008011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC020903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001625.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  G25372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  G28049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  G28082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL295298.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL583023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976395.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 7442 UniSTS
UniSTS STS-T82277 UniSTS SSLP Pipeline