WI-18796 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: WI-18796

Symbol: WI-18796
Previously known as: HSA.409; STS-D21337; 
RGD ID: 2129228
Expected Size: 128 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X107,399,941 - 107,400,068UniSTSGRCh37
Build 36X107,286,597 - 107,286,724RGDNCBI36
CeleraX107,871,408 - 107,871,535RGD
Cytogenetic MapXq22UniSTS
HuRefX97,022,371 - 97,022,498UniSTS
GeneMap99-GB4 RH MapX283.24UniSTS
Whitehead-RH MapX267.4UniSTS
NCBI RH MapX561.2UniSTS
Is Marker For: Genes:   COL4A6  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer CCTCGGGTCCATAGAGATGA
Reverse Primer GGCCCATCAAATCTTTCTGA
 

Region

Nucleotide Sequences
RefSeq Transcripts NM_001847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_033641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL031177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC140855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC144669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001631.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT009680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D21337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  G06158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL301597.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL583225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976428.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U04845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 1288 UniSTS
UniSTS WI-18796 UniSTS SSLP Pipeline