SHGC-642 Marker Search Result - Rat Genome Database

Help | FTP Download | Citing RGD | Contact Us

Keyword

General

Marker: SHGC-642

Symbol:

SHGC-642

Also known as:

AFM218zb6;

Expected Size:

178 (bp)

Position

Map	Chr	Position	Source
Human GeneMap99-G3 RH Map	1	9354.0	UniSTS
Human TNG Radiation Hybrid Map	1	122293.0	UniSTS
Human Genome Assembly HuRef	1	212,279,489 - 212,279,666	UniSTS
Human Genome Assembly GRCh37	1	241,821,414 - 241,821,591	UniSTS
Human Celera Assembly	1	215,076,615 - 215,076,792	RGD
Human Genome Assembly Build 36	1	239,888,037 - 239,888,214	RGD
Human Cytogenetic Map	1	q43	UniSTS

Is Marker For:

Genes: WDR64

Model

Launch Genome Browser (GBrowse) : build 36 (hg18) , build 37 (hg19)

Annotation

References - curated

Strains and Sequence

Sequence

Region

Genes in Region (Human Genome Assembly GRCh37)

Nucleotide Sequences

QTLs in Region (Human Genome Assembly GRCh37)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298441	RA2_H	Rheumatoid arthritis QTL 2 (human)		.0048	Joint/bone inflammation	rheumatoid arthritis	1	222893908	248893908	Human
1298464	BP18_H	Blood pressure QTL 18 (human)		.0263	Blood pressure	hypertension susceptibility	1	228756079	249231268	Human
1358828	MULTSCL2_H	Multiple sclerosis susceptibility QTL 2 (human)			Multiple sclerosis susceptibility		1	228756079	249231268	Human
1357296	AASTH9_H	Allergic/atopic asthma related QTL 9 (human)	1.17		Reversible airflow obstruction	ETS negative	1	162948826	244300505	Human
1559131	SCL19_H	Serum cholesterol level QTL 19 (human)	2.5	.000078	Lipid level	LDL cholesterol	1	228756079	249231268	Human
2293471	PRSTS300_H	Prostate tumor susceptibility QTL 300 (human)		.02	Prostate tumor susceptibility		1	228756079	249231268	Human
2293374	PRSTS278_H	Prostate tumor susceptibility QTL 278 (human)			Prostate tumor susceptibility		1	228288748	249231268	Human
2299935	PRSTS334_H	Prostate tumor susceptibility QTL 334 (human)	3.3	.001	Prostate tumor susceptibility		1	227876858	249231268	Human
2299934	PRSTS333_H	Prostate tumor susceptibility QTL 333 (human)		.001	Prostate tumor susceptibility		1	227876858	249231268	Human
2300001	PRSTS346_H	Prostate tumor susceptibility QTL 346 (human)		.0026	Prostate tumor susceptibility		1	227876858	249231268	Human
2299881	PRSTS316_H	Prostate tumor susceptibility QTL 316 (human)		.1	Prostate tumor susceptibility		1	227876858	249231268	Human
2299878	PRSTS315_H	Prostate tumor susceptibility QTL 315 (human)		.08	Prostate tumor susceptibility		1	227876858	249231268	Human
2315770	GLUCO150_H	Glucose level QTL 150 (human)	3.63	.000022	Glucose level		1	233870246	249231268	Human
2315766	GLUCO142_H	Glucose level QTL 142 (human)	2.14	.00156	Glucose level		1	233870246	249231268	Human
2314560	GLUCO48_H	Glucose level QTL 48 (human)	1.7		Glucose level		1	235130361	249231268	Human
2302772	MAMTS8_H	Mammary tumor susceptibility QTL 8 (human)		.038	Mammary tumor susceptibility		1	221659724	247659724	Human
2302762	MAMTS7_H	Mammary tumor susceptibility QTL 7 (human)		.014	Mammary tumor susceptibility		1	218950646	244950646	Human
2316889	GLUCO290_H	Glucose level QTL 290 (human)	1.31	.0089	Glucose level		1	233870246	249231268	Human
2316331	GLUCO231_H	Glucose level QTL 231 (human)	2.38		Glucose level		1	218950646	244950646	Human
2316699	GLUCO266_H	Glucose level QTL 266 (human)	1.64	.00533	Glucose level		1	227876858	249231268	Human

Additional Information

External Database Links

More on SHGC-642
	Genome Browser:	(hg18) (hg19)
	Ensembl
	NCBI

RGD Object Information
RGD ID:	2115134
Created:	2008-01-14
Species:	Homo sapiens
Last Modified:	2013-05-13
Status:	ACTIVE