SHGC-111679 Marker Search Result - Rat Genome Database

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Keyword

General

Marker: SHGC-111679

Symbol:

SHGC-111679

Also known as:

Expected Size:

320 (bp)

Position

Map	Chr	Position	Source
Human TNG Radiation Hybrid Map	17	17558.0	UniSTS
Human Genome Assembly HuRef	17	33,805,859 - 33,806,178	UniSTS
Human Genome Assembly GRCh37	17	38,011,734 - 38,012,053	UniSTS
Human Celera Assembly	17	34,671,970 - 34,672,289	RGD
Human Genome Assembly Build 36	17	35,265,260 - 35,265,579	RGD
Human Cytogenetic Map	17	q21	UniSTS

Is Marker For:

Genes: IKZF3

Model

Launch Genome Browser (GBrowse) : build 36 (hg18) , build 37 (hg19)

Annotation

References - curated

Strains and Sequence

Sequence

Region

Genes in Region (Human Genome Assembly GRCh37)

Nucleotide Sequences

QTLs in Region (Human Genome Assembly GRCh37)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298468	BP34_H	Blood pressure QTL 34 (human)	2.16		Blood pressure	systolic	17	623167	66547903	Human
1331651	COPD12_H	Chronic obstructive pulmonary disease QTL 12 (human)	2.44		Chronic airflow obstruction	post-bronchodilator FEV1/FVC	17	10859378	66547903	Human
1559242	FBRL6_H	Fibrinogen level QTL 6 (human)	1.5		Fibrinogen level		17	10859378	80253028	Human
1298406	BP16_H	Blood pressure QTL 16 (human)		.0004	Blood pressure	hypertension susceptibility	17	13105673	39105673	Human
1643073	BW119_H	Body Weight QTL 119 (human)	2.35	.0005	Body weight		17	15382302	41382302	Human
1643382	BW310_H	Body weight QTL 310 (human)	1.97	.0018	Body fat amount		17	15382302	41382302	Human
2314769	GLUCO98_H	Glucose level QTL 98 (human)	2.7		Glucose level	non-insulin dependent	17	15382302	41382302	Human
2314774	GLUCO103_H	Glucose level QTL 103 (human)	2.2		Glucose level	non-insulin dependent	17	15382302	41382302	Human
2314775	GLUCO99_H	Glucose level QTL 99 (human)	3	.003	Glucose level	non-insulin dependent	17	15382302	41382302	Human
1559256	SCL59_H	Serum cholesterol level QTL 59 (human)	2.48		Lipid level	total cholesterol	17	16064515	80253028	Human
1559262	SAPOB5_H	Serum apolipoprotein B level QTL 5 (human)	3.7	.00009	Apolipoprotein level	apolipoprotein B	17	17264482	38994609	Human
2289574	BW499_H	Body weight QTL 499 (human)	1.96		Body weight	BMI	17	18290029	44290029	Human
1357357	BW56_H	Body weight QTL 56 (human)	2.33		Body weight	body mass index	17	19560307	45560307	Human
2314737	GLUCO88_H	Glucose level QTL 88 (human)	.62	.01	Glucose level	non-insulin dependent	17	22006539	48006539	Human
1331649	COPD22_H	Chronic obstructive pulmonary disease QTL 22 (human)	2.68		Chronic airflow obstruction	FEV1/FVC ratio	17	28382175	46673227	Human
2289219	BW363_H	Body weight QTL 363 (human)		.023	Body fat amount	percent fat	17	29807083	55807083	Human
1298510	RA28_H	Rheumatoid arthritis QTL 28 (human)		.0054	Joint/bone inflammation	rheumatoid arthritis	17	33673168	59673168	Human
1643409	BW271_H	Body Weight QTL 271 (human)	2.09	.001	Body weight		17	33673168	59673168	Human
2292948	PRSTS109_H	Prostate tumor susceptibility QTL 109 (human)	2.99		Prostate tumor susceptibility		17	36784990	62784990	Human
2292966	PRSTS114_H	Prostate tumor susceptibility QTL 114 (human)	3.85		Prostate tumor susceptibility		17	36784990	62784990	Human
2292975	PRSTS112_H	Prostate tumor susceptibility QTL 112 (human)	2.55		Prostate tumor susceptibility		17	36784990	62784990	Human
2292980	PRSTS115_H	Prostate tumor susceptibility QTL 115 (human)	1.7		Prostate tumor susceptibility		17	36784990	62784990	Human
2292987	PRSTS116_H	Prostate tumor susceptibility QTL 116 (human)	5.49		Prostate tumor susceptibility		17	36784990	62784990	Human
2292996	PRSTS108_H	Prostate tumor susceptibility QTL 108 (human)	2.52		Prostate tumor susceptibility		17	36784990	62784990	Human
2292997	PRSTS113_H	Prostate tumor susceptibility QTL 113 (human)	3.24		Prostate tumor susceptibility		17	36784990	62784990	Human
2293010	PRSTS111_H	Prostate tumor susceptibility QTL 111 (human)	3.99		Prostate tumor susceptibility		17	36784990	62784990	Human
2292925	PRSTS110_H	Prostate tumor susceptibility QTL 110 (human)	3.15		Prostate tumor susceptibility		17	36784990	62784990	Human
2292887	PRSTS90_H	Prostate tumor susceptibility QTL 90 (human)			Prostate tumor susceptibility		17	36784990	62784990	Human
2292890	PRSTS84_H	Prostate tumor susceptibility QTL 84 (human)			Prostate tumor susceptibility		17	36784990	62784990	Human
1298421	BP35_H	Blood pressure QTL 35 (human)		.0001	Blood pressure	hypertension susceptibility	17	36852911	68465676	Human
2302768	MAMTS25_H	Mammary tumor susceptibility QTL 25 (human)		.01	Mammary tumor susceptibility		17	36917829	62917829	Human

Additional Information

External Database Links

More on SHGC-111679
	Genome Browser:	(hg18) (hg19)
	Ensembl
	NCBI

RGD Object Information
RGD ID:	1749971
Created:	2008-01-12
Species:	Homo sapiens
Last Modified:	2013-06-10
Status:	ACTIVE