SHGC-87688 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: SHGC-87688

Symbol: SHGC-87688
Previously known as: WI-14947; EST277754; 
RGD ID: 1659194
Expected Size: 100 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372145,862,420 - 45,862,519UniSTSGRCh37
Build 362144,686,848 - 44,686,947RGDNCBI36
Celera2130,970,508 - 30,970,607RGD
Cytogenetic Map21q22.3UniSTS
HuRef2131,236,749 - 31,236,848UniSTS
TNG Radiation Hybrid Map2118876.0UniSTS
GeneMap99-GB4 RH Map21242.11UniSTS
Whitehead-RH Map21258.8UniSTS
NCBI RH Map21407.7UniSTS
Is Marker For: Genes:   LRRC3   TRPM2  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TGGCAGATTTAATGTCTTGGG
Reverse Primer GTGGGGGCCTTCTGGTTT
 

Region

Nucleotide Sequences
RefSeq Transcripts NM_003307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB001535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB017549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB166745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB166746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ417076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AP001065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AP001754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BA000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC041570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001629.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ012935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU362987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL295453.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL583005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  H17816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976414.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 7226 UniSTS
  81543 UniSTS
UniSTS SHGC-87688 UniSTS SSLP Pipeline