Zfp600 (zinc finger protein 600) - Rat Genome Database

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Gene: Zfp600 (zinc finger protein 600) Rattus norvegicus
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Symbol: Zfp600
Name: zinc finger protein 600
RGD ID: 9286049
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be located in nuclear body and nucleolus. Orthologous to human ZNF300 (zinc finger protein 300); INTERACTS WITH 17beta-estradiol (ortholog); 2,2',4,4'-Tetrabromodiphenyl ether (ortholog); aflatoxin B1 (ortholog).
Type: protein-coding
Previously known as: LOC103690343; zinc finger protein 260-like
RGD Orthologs
Human
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 Ensembl1138,727,048 - 38,773,607 (+)EnsemblRnor6.0rn6Rnor6.0
Celera158,043,821 - 58,091,761 (-)NCBICelera
Cytogenetic Map1 NCBI


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nuclear body  (ISO)
nucleolus  (ISO)
nucleoplasm  (ISO)
nucleus  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
Additional References at PubMed
PMID:20585888   PMID:23665872  


Genomics

Comparative Map Data
Zfp600
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 Ensembl1138,727,048 - 38,773,607 (+)EnsemblRnor6.0rn6Rnor6.0
Celera158,043,821 - 58,091,761 (-)NCBICelera
Cytogenetic Map1 NCBI
ZNF300
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385150,894,399 - 150,904,980 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5150,894,392 - 150,904,983 (-)EnsemblGRCh38hg38GRCh38
GRCh375150,273,961 - 150,284,542 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365150,254,157 - 150,264,584 (-)NCBINCBI36Build 36hg18NCBI36
Build 345150,254,156 - 150,264,584NCBI
Celera5146,355,280 - 146,365,871 (-)NCBICelera
Cytogenetic Map5q33.1NCBI
HuRef5145,419,818 - 145,430,409 (-)NCBIHuRef
CHM1_15149,706,761 - 149,717,352 (-)NCBICHM1_1
T2T-CHM13v2.05151,430,897 - 151,441,478 (-)NCBIT2T-CHM13v2.0
Znf300
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554153,703,845 - 3,713,311 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554153,701,434 - 3,713,097 (+)NCBIChiLan1.0ChiLan1.0
ZNF300
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24146,124,084 - 146,136,931 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15144,261,386 - 144,276,480 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05146,321,953 - 146,332,550 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15152,324,546 - 152,335,158 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5152,324,546 - 152,335,155 (-)Ensemblpanpan1.1panPan2
ZNF300
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1458,259,623 - 58,306,364 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl458,295,193 - 58,305,585 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha458,025,286 - 58,043,498 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0458,739,703 - 58,758,151 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1458,529,240 - 58,547,686 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0458,641,896 - 58,660,342 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0459,173,234 - 59,191,699 (+)NCBIUU_Cfam_GSD_1.0
Znf300
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213142,407,027 - 142,418,434 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365043,987,812 - 3,994,656 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365043,981,019 - 3,991,480 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF300
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2151,842,009 - 151,856,042 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12151,842,002 - 151,872,343 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZNF300
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12353,503,737 - 53,514,191 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2353,504,759 - 53,507,914 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603424,200,846 - 24,213,487 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf300
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477410,142,938 - 10,162,365 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477410,142,969 - 10,164,131 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_006222969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000081537   ⟹   ENSRNOP00000069321
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl161,942,116 - 61,989,490 (-)Ensembl
Rnor_6.0 Ensembl1138,727,048 - 38,773,607 (+)Ensembl
RefSeq Acc Id: XM_006222969   ⟹   XP_006223031
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera158,043,821 - 58,091,761 (-)NCBI
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:9286049 AgrOrtholog
Ensembl Genes ENSRNOG00000051867 Ensembl
NCBI Gene LOC103690343 ENTREZGENE
PhenoGen Zfp600 PhenoGen
RatGTEx ENSRNOG00000051867 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-08-01 Zfp600  zinc finger protein 600  Znf300  zinc finger protein 300  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2017-08-01 Znf300  zinc finger protein 300  LOC103690343  zinc finger protein 260-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-08-25 LOC103690343  zinc finger protein 260-like      Symbol and Name status set to provisional 70820 PROVISIONAL