Adi1 (acireductone dioxygenase 1) - Rat Genome Database

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Gene: Adi1 (acireductone dioxygenase 1) Rattus norvegicus
Analyze
Symbol: Adi1
Name: acireductone dioxygenase 1
RGD ID: 727828
Description: Predicted to enable acireductone dioxygenase [iron(II)-requiring] activity. Predicted to be involved in L-methionine salvage from methylthioadenosine. Predicted to be located in cytoplasm; nucleus; and plasma membrane. Orthologous to human ADI1 (acireductone dioxygenase 1); PARTICIPATES IN cysteine and methionine metabolic pathway; INTERACTS WITH acetamide; bisphenol A; Cuprizon.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase; aci-reductone dioxygenase (ARD)-like protein 1; acireductone dioxygenase; acireductone dioxygenase (Fe(2+)-requiring); acireductone dioxygenase (Ni(2+)-requiring); Alp1; androgen-responsive ARD-like protein 1; androgen-responsive gene encoding an ARD-like protein; ARD; ARD'; Fe-ARD; LOC298934; membrane-type 1 matrix metalloproteinase cytoplasmic tail-binding protein 1; MGC108527; MTCBP-1; Ni-ARD
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8651,035,267 - 51,042,229 (+)NCBIGRCr8
mRatBN7.2645,306,885 - 45,313,847 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl645,306,841 - 45,313,842 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx645,598,268 - 45,605,249 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0645,913,134 - 45,920,116 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0645,350,003 - 45,356,984 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0647,940,211 - 47,947,173 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl647,940,183 - 47,947,230 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0656,642,247 - 56,649,209 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4646,552,589 - 46,559,551 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1646,555,717 - 46,562,674 (+)NCBI
Celera644,529,865 - 44,536,827 (+)NCBICelera
Cytogenetic Map6q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO,ISS)
nucleus  (ISO,ISS)
plasma membrane  (ISO,ISS)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. NCBI rat LocusLink and RefSeq merged data October 15, 2003 NCBI rat LocusLink and RefSeq merged data October 15, 2003
3. Identification and characterization of an androgen-responsive gene encoding an aci-reductone dioxygenase-like protein in the rat prostate. Oram S, etal., Endocrinology 2004 Apr;145(4):1933-42. Epub 2003 Dec 18.
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11602742   PMID:12477932   PMID:14718544   PMID:15489334   PMID:15938715  


Genomics

Comparative Map Data
Adi1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8651,035,267 - 51,042,229 (+)NCBIGRCr8
mRatBN7.2645,306,885 - 45,313,847 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl645,306,841 - 45,313,842 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx645,598,268 - 45,605,249 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0645,913,134 - 45,920,116 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0645,350,003 - 45,356,984 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0647,940,211 - 47,947,173 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl647,940,183 - 47,947,230 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0656,642,247 - 56,649,209 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4646,552,589 - 46,559,551 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1646,555,717 - 46,562,674 (+)NCBI
Celera644,529,865 - 44,536,827 (+)NCBICelera
Cytogenetic Map6q16NCBI
ADI1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3823,497,366 - 3,519,531 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl23,497,366 - 3,519,531 (-)EnsemblGRCh38hg38GRCh38
GRCh3723,501,137 - 3,523,302 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3623,480,698 - 3,502,306 (-)NCBINCBI36Build 36hg18NCBI36
Celera23,555,166 - 3,576,801 (-)NCBICelera
Cytogenetic Map2p25.3NCBI
HuRef23,489,118 - 3,510,766 (-)NCBIHuRef
CHM1_123,430,312 - 3,452,745 (-)NCBICHM1_1
T2T-CHM13v2.023,519,420 - 3,541,579 (-)NCBIT2T-CHM13v2.0
Adi1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391228,725,206 - 28,732,174 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1228,725,230 - 28,732,174 (+)EnsemblGRCm39 Ensembl
GRCm381228,675,207 - 28,682,175 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1228,675,231 - 28,682,175 (+)EnsemblGRCm38mm10GRCm38
MGSCv371229,360,072 - 29,367,040 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361229,261,475 - 29,268,443 (+)NCBIMGSCv36mm8
Celera1230,166,832 - 30,175,227 (+)NCBICelera
Cytogenetic Map12A2NCBI
cM Map1211.05NCBI
Adi1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554873,816,428 - 3,822,663 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554873,816,428 - 3,822,663 (+)NCBIChiLan1.0ChiLan1.0
ADI1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212122,983,366 - 123,012,528 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A122,987,337 - 123,015,972 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A3,509,162 - 3,538,064 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A3,430,158 - 3,458,248 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A3,430,158 - 3,458,248 (-)Ensemblpanpan1.1panPan2
ADI1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1172,087,107 - 2,095,576 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha172,072,839 - 2,081,800 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0172,180,864 - 2,189,876 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl172,180,863 - 2,189,875 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1172,066,587 - 2,075,552 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0172,087,626 - 2,096,571 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0172,088,980 - 2,097,977 (-)NCBIUU_Cfam_GSD_1.0
Adi1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629246,929,188 - 46,939,198 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365321,682,223 - 1,691,104 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365321,684,281 - 1,693,835 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ADI1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3131,295,257 - 131,304,309 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13131,295,257 - 131,303,663 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23140,460,860 - 140,469,267 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ADI1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.114104,140,027 - 104,172,782 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl14104,139,952 - 104,172,271 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660458,130,091 - 8,158,560 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Adi1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248465,203,008 - 5,212,942 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248465,203,305 - 5,208,931 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Adi1
25 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:379
Count of miRNA genes:207
Interacting mature miRNAs:244
Transcripts:ENSRNOT00000011951
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63207442872227641Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63330954957730294Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63330954981132889Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63443413777102317Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63509870971636405Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)63569161857730540Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat

Markers in Region
RH130013  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2645,313,588 - 45,313,798 (+)MAPPERmRatBN7.2
Rnor_6.0647,946,915 - 47,947,124NCBIRnor6.0
Rnor_5.0656,648,951 - 56,649,160UniSTSRnor5.0
RGSC_v3.4646,559,293 - 46,559,502UniSTSRGSC3.4
Celera644,536,569 - 44,536,778UniSTS
RH 3.4 Map6261.3UniSTS
Cytogenetic Map6q16UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 35 57 41 19 41 2 5 70 35 33 11 2
Low 8 6 6 4 8 6
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000011951   ⟹   ENSRNOP00000011952
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl645,306,841 - 45,313,842 (+)Ensembl
Rnor_6.0 Ensembl647,940,183 - 47,947,230 (+)Ensembl
RefSeq Acc Id: NM_199097   ⟹   NP_954528
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8651,035,267 - 51,042,229 (+)NCBI
mRatBN7.2645,306,885 - 45,313,847 (+)NCBI
Rnor_6.0647,940,211 - 47,947,173 (+)NCBI
Rnor_5.0656,642,247 - 56,649,209 (+)NCBI
RGSC_v3.4646,552,589 - 46,559,551 (+)RGD
Celera644,529,865 - 44,536,827 (+)RGD
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_954528   ⟸   NM_199097
- UniProtKB: Q562C9 (UniProtKB/Swiss-Prot),   Q6V9S4 (UniProtKB/Swiss-Prot),   A6HB14 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000011952   ⟸   ENSRNOT00000011951

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q562C9-F1-model_v2 AlphaFold Q562C9 1-179 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694533
Promoter ID:EPDNEW_R5058
Type:multiple initiation site
Name:Adi1_1
Description:acireductone dioxygenase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0647,940,208 - 47,940,268EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:727828 AgrOrtholog
BioCyc Gene G2FUF-37963 BioCyc
Ensembl Genes ENSRNOG00000008950 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00055005737 UniProtKB/Swiss-Prot
  ENSRNOG00060009020 UniProtKB/Swiss-Prot
  ENSRNOG00065010582 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000011951 ENTREZGENE
  ENSRNOT00000011951.7 UniProtKB/Swiss-Prot
  ENSRNOT00055009261 UniProtKB/Swiss-Prot
  ENSRNOT00060015116 UniProtKB/Swiss-Prot
  ENSRNOT00065017124 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.120.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7326245 IMAGE-MGC_LOAD
InterPro ARD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARD_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RmlC-like_jellyroll UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RmlC_Cupin_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:298934 UniProtKB/Swiss-Prot
MGC_CLONE MGC:108527 IMAGE-MGC_LOAD
NCBI Gene 298934 ENTREZGENE
PANTHER 1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ACIREDUCTONE DIOXYGENASE UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
Pfam ARD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Adi1 PhenoGen
RatGTEx ENSRNOG00000008950 RatGTEx
  ENSRNOG00055005737 RatGTEx
  ENSRNOG00060009020 RatGTEx
  ENSRNOG00065010582 RatGTEx
Superfamily-SCOP RmlC-like cupins UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt A6HB14 ENTREZGENE, UniProtKB/TrEMBL
  A6HB15_RAT UniProtKB/TrEMBL
  A6HB16_RAT UniProtKB/TrEMBL
  MTND_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q6V9S4 ENTREZGENE
UniProt Secondary Q6V9S4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Adi1  acireductone dioxygenase 1  Alp1  aci-reductone dioxygenase (ARD)-like protein 1  Symbol and Name updated 1299863 APPROVED
2005-07-08 Alp1  aci-reductone dioxygenase (ARD)-like protein 1  LOC298934  androgen-responsive gene encoding an ARD-like protein  Symbol and Name updated 1299863 APPROVED