Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | juvenile rheumatoid arthritis | | ISO | PCYT1B (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:19565504 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | juvenile rheumatoid arthritis | | ISO | PCYT1B (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:19565504 | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | Rat ISS GO annotations from GOA human gene data--August 2006 | GOA data from the GO Consortium |
3. | Gene structure, expression and identification of a new CTP:phosphocholine cytidylyltransferase beta isoform. | Karim M, etal., Biochim Biophys Acta 2003 Jul 4;1633(1):1-12. |
4. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
5. | KEGG Annotation Import Pipeline | Pipeline to import KEGG annotations from KEGG into RGD |
6. | GOA pipeline | RGD automated data pipeline |
7. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
8. | Functions of membrane binding domain of CTP:phosphocholine cytidylyltransferase in alveolar type II cells. | Ridsdale R, etal., Am J Respir Cell Mol Biol. 2010 Jul;43(1):74-87. doi: 10.1165/rcmb.2009-0231OC. Epub 2009 Aug 14. |
9. | Cloning of cytidine triphosphate: phosphocholine cytidylyltransferase mRNA upregulated by a neuropeptide arginine-vasopressin((4-8)) in rat hippocampus. | Xiong Y, etal., Neurosci Lett. 2000 Apr 7;283(2):129-32. |
PMID:12114961 | PMID:15143167 | PMID:17981805 | PMID:19783652 | PMID:22871113 |
Pcyt1b (Rattus norvegicus - Norway rat) |
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PCYT1B (Homo sapiens - human) |
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Pcyt1b (Mus musculus - house mouse) |
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Pcyt1b (Chinchilla lanigera - long-tailed chinchilla) |
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PCYT1B (Pan paniscus - bonobo/pygmy chimpanzee) |
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PCYT1B (Canis lupus familiaris - dog) |
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Pcyt1b (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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PCYT1B (Sus scrofa - pig) |
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PCYT1B (Chlorocebus sabaeus - green monkey) |
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Pcyt1b (Heterocephalus glaber - naked mole-rat) |
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Variants in Pcyt1b
241 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
AU049608 |
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Pcyt1b |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 66 | 2 | |||||||||||
Low | 2 | 35 | 28 | 12 | 19 | 12 | 8 | 9 | 8 | 29 | 39 | 11 | 8 |
Below cutoff | 1 | 8 | 24 | 24 | 24 | 1 | 6 |
RefSeq Transcripts | NM_173151 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_006257016 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006257017 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008773254 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039099519 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039099520 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039099521 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AF190256 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
CH473966 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000021 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000016669 ⟹ ENSRNOP00000016669 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000077055 ⟹ ENSRNOP00000068408 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000094465 ⟹ ENSRNOP00000077206 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_173151 ⟹ NP_775174 | ||||||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006257016 ⟹ XP_006257078 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006257017 ⟹ XP_006257079 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_039099519 ⟹ XP_038955447 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039099520 ⟹ XP_038955448 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039099521 ⟹ XP_038955449 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Protein RefSeqs | NP_775174 | (Get FASTA) | NCBI Sequence Viewer |
XP_006257078 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006257079 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038955447 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038955448 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038955449 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAF04586 | (Get FASTA) | NCBI Sequence Viewer |
EDL96015 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000016669 | ||
ENSRNOP00000016669.4 | |||
ENSRNOP00000068408 | |||
ENSRNOP00000068408.1 | |||
ENSRNOP00000077206 | |||
ENSRNOP00000077206.1 | |||
GenBank Protein | Q9QZC4 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_775174 ⟸ NM_173151 |
- UniProtKB: | Q9QZC4 (UniProtKB/Swiss-Prot), G3V7M5 (UniProtKB/TrEMBL), A6IPZ8 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006257079 ⟸ XM_006257017 |
- Peptide Label: | isoform X2 |
- UniProtKB: | Q9QZC4 (UniProtKB/Swiss-Prot), A0A096MK76 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006257078 ⟸ XM_006257016 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q9QZC4 (UniProtKB/Swiss-Prot), A0A8I5ZK90 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000068408 ⟸ ENSRNOT00000077055 |
RefSeq Acc Id: | ENSRNOP00000016669 ⟸ ENSRNOT00000016669 |
RefSeq Acc Id: | XP_038955449 ⟸ XM_039099521 |
- Peptide Label: | isoform X3 |
RefSeq Acc Id: | XP_038955448 ⟸ XM_039099520 |
- Peptide Label: | isoform X3 |
RefSeq Acc Id: | XP_038955447 ⟸ XM_039099519 |
- Peptide Label: | isoform X3 |
RefSeq Acc Id: | ENSRNOP00000077206 ⟸ ENSRNOT00000094465 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q9QZC4-F1-model_v2 | AlphaFold | Q9QZC4 | 1-369 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
Database | Acc Id | Source(s) |
AGR Gene | RGD:708434 | AgrOrtholog |
BioCyc Gene | G2FUF-2263 | BioCyc |
BioCyc Pathway | PWY-3561 [choline biosynthesis III] | BioCyc |
PWY-7782 [plasmalogen biosynthesis] | BioCyc | |
PWY3O-450 [phosphatidylcholine biosynthesis I] | BioCyc | |
BioCyc Pathway Image | PWY-3561 | BioCyc |
PWY-7782 | BioCyc | |
PWY3O-450 | BioCyc | |
Ensembl Genes | ENSRNOG00000012358 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000016669 | ENTREZGENE |
ENSRNOT00000016669.7 | UniProtKB/TrEMBL | |
ENSRNOT00000077055.3 | UniProtKB/TrEMBL | |
ENSRNOT00000094465.1 | UniProtKB/TrEMBL | |
Gene3D-CATH | 3.40.50.620 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
InterPro | CCT | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Cyt_trans-like | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pcy1-like | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Rossmann-like_a/b/a_fold | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | rno:286936 | UniProtKB/Swiss-Prot |
NCBI Gene | 286936 | ENTREZGENE |
PANTHER | CHOLINE-PHOSPHATE CYTIDYLYLTRANSFERASE B | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PTHR10739 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | CTP_transf_like | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PhenoGen | Pcyt1b | PhenoGen |
RatGTEx | ENSRNOG00000012358 | RatGTEx |
Superfamily-SCOP | Nucleotidylyl transferase | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
UniProt | A0A096MK76 | ENTREZGENE, UniProtKB/TrEMBL |
A0A8I5ZK90 | ENTREZGENE, UniProtKB/TrEMBL | |
A6IPZ8 | ENTREZGENE, UniProtKB/TrEMBL | |
G3V7M5 | ENTREZGENE, UniProtKB/TrEMBL | |
PCY1B_RAT | UniProtKB/Swiss-Prot, ENTREZGENE |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2021-03-18 | Pcyt1b | phosphate cytidylyltransferase 1B, choline | Pcyt1b | phosphate cytidylyltransferase 1, choline, beta | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2008-10-24 | Pcyt1b | phosphate cytidylyltransferase 1, choline, beta | Pcyt1b | phosphate cytidylyltransferase 1, choline, beta isoform | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2005-02-28 | Pcyt1b | phosphate cytidylyltransferase 1, choline, beta isoform | Cctbeta | CTP:phosphocholine cytidylyltransferase B | Symbol and Name updated to reflect Human and Mouse nomenclature | 1299863 | APPROVED |