Arfip1 (ADP-ribosylation factor interacting protein 1)

Gene: Arfip1 (ADP-ribosylation factor interacting protein 1) Rattus norvegicus

Analyze

Symbol:

Arfip1

Name:

ADP-ribosylation factor interacting protein 1

RGD ID:

708401

Description:

Predicted to enable phosphatidylinositol-4-phosphate binding activity. Predicted to be involved in intracellular protein transport; negative regulation of retrograde transport, endosome to Golgi; and regulation of Arp2/3 complex-mediated actin nucleation. Predicted to act upstream of or within regulation of protein secretion. Predicted to be located in Golgi membrane and cytosol. Predicted to be active in trans-Golgi network membrane. Orthologous to human ARFIP1 (ADP ribosylation factor interacting protein 1); INTERACTS WITH (+)-schisandrin B; 2,4,6-trinitrobenzenesulfonic acid; ammonium chloride.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

ADP-ribosylation factor-interacting protein 1; arfaptin 1; arfaptin-1; LOC60382

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	172,141,862 - 172,224,464 (-)	NCBI		GRCr8
mRatBN7.2	2	169,843,804 - 169,924,136 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	169,843,801 - 169,923,142 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	177,023,758 - 177,101,869 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	175,043,657 - 175,121,767 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	169,645,180 - 169,723,285 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	183,503,250 - 183,582,798 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	183,504,330 - 183,582,553 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	202,911,579 - 202,991,075 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	176,275,425 - 176,353,675 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	176,225,530 - 176,303,781 (-)	NCBI
Celera	2	163,843,358 - 163,921,484 (-)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

1-nitropyrene (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,4,6-trinitrobenzenesulfonic acid (EXP)

3,3',5,5'-tetrabromobisphenol A (ISO)

acrolein (ISO)

alpha-pinene (ISO)

ammonium chloride (EXP)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

caffeine (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (ISO)

diarsenic trioxide (ISO)

diazinon (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

ethanol (ISO)

fenthion (ISO)

flavonoids (EXP)

folic acid (ISO)

FR900359 (ISO)

fulvestrant (ISO)

geldanamycin (ISO)

ivermectin (ISO)

methotrexate (ISO)

N-nitrosodiethylamine (EXP)

nickel atom (ISO)

ozone (ISO)

paracetamol (ISO)

phenytoin (EXP)

pirinixic acid (ISO)

SB 431542 (ISO)

sodium fluoride (ISO)

Soman (EXP)

tetrachloromethane (EXP,ISO)

thapsigargin (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

trichostatin A (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intracellular protein transport (IBA,IEA,ISO)

negative regulation of retrograde transport, endosome to Golgi (IEA,ISO)

regulation of Arp2/3 complex-mediated actin nucleation (IBA,IEA)

regulation of protein secretion (IEA,ISO)

Cellular Component

cytosol (IEA,ISO)

Golgi membrane (IEA,ISO)

trans-Golgi network membrane (IBA,IEA,ISO)

Molecular Function

phosphatidylinositol-4-phosphate binding (IEA,ISO)

phospholipid binding (IBA,IEA)

protein binding (ISO)

protein domain specific binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Arfaptin 1 inhibits ADP-ribosylation factor-dependent matrix metalloproteinase-9 secretion induced by phorbol ester in HT 1080 fibrosarcoma cells.	Ho WT, etal., FEBS Lett 2003 Feb 27;537(1-3):91-5.
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8635150	PMID:9038142	PMID:11591653	PMID:22981988	PMID:23695357	PMID:25468996	PMID:25789876

Genomics

Comparative Map Data

Arfip1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	172,141,862 - 172,224,464 (-)	NCBI		GRCr8
mRatBN7.2	2	169,843,804 - 169,924,136 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	169,843,801 - 169,923,142 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	177,023,758 - 177,101,869 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	175,043,657 - 175,121,767 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	169,645,180 - 169,723,285 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	183,503,250 - 183,582,798 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	183,504,330 - 183,582,553 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	202,911,579 - 202,991,075 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	176,275,425 - 176,353,675 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	176,225,530 - 176,303,781 (-)	NCBI
Celera	2	163,843,358 - 163,921,484 (-)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

ARFIP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	152,779,954 - 152,912,357 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	152,779,937 - 152,918,463 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	153,701,106 - 153,833,509 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	153,920,562 - 154,052,514 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	154,058,727 - 154,189,053	NCBI
Celera	4	151,025,104 - 151,157,752 (+)	NCBI		Celera
Cytogenetic Map	4	q31.3	NCBI
HuRef	4	149,427,137 - 149,559,291 (+)	NCBI		HuRef
CHM1_1	4	153,679,080 - 153,811,057 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	156,103,024 - 156,235,555 (+)	NCBI		T2T-CHM13v2.0

Arfip1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	84,403,400 - 84,490,075 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	84,403,733 - 85,794,825 (-)	Ensembl		GRCm39 Ensembl
GRCm39 Ensembl	3	84,403,400 - 84,489,932 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	84,496,093 - 84,582,751 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	84,496,426 - 85,887,518 (-)	Ensembl	GRCm38		mm10	GRCm38
GRCm38.p6 Ensembl	3	84,496,093 - 84,582,625 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	84,299,985 - 84,390,065 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	84,581,990 - 84,672,070 (-)	NCBI		MGSCv36	mm8
Celera	3	84,506,047 - 84,596,205 (-)	NCBI		Celera
Cytogenetic Map	3	F1	NCBI
cM Map	3	37.7	NCBI

Arfip1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955471	7,238,456 - 7,351,055 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955471	7,238,456 - 7,349,767 (+)	NCBI	ChiLan1.0	ChiLan1.0

ARFIP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	150,665,301 - 150,798,214 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	151,020,811 - 151,153,701 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	145,119,881 - 145,252,601 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	156,770,384 - 156,901,754 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	156,770,510 - 156,901,754 (+)	Ensembl	panpan1.1		panPan2

ARFIP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	50,618,392 - 50,756,300 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	50,618,087 - 50,755,339 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	50,965,110 - 51,103,001 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	51,305,012 - 51,443,008 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	51,304,708 - 51,441,280 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	50,567,205 - 50,699,297 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	50,666,679 - 50,804,559 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	50,977,655 - 51,115,571 (+)	NCBI		UU_Cfam_GSD_1.0

Arfip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405301	39,750,432 - 39,859,883 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936689	2,671,424 - 2,780,814 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936689	2,671,204 - 2,781,107 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARFIP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	76,168,403 - 76,270,609 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	76,168,731 - 76,270,554 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	80,737,499 - 80,791,563 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ARFIP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	99,341,992 - 99,467,715 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	99,341,905 - 99,468,909 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	78,991,937 - 79,118,394 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Arfip1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624858	4,193,357 - 4,299,652 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624858	4,193,418 - 4,299,445 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Arfip1
330 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	315
Count of miRNA genes:	202
Interacting mature miRNAs:	232
Transcripts:	ENSRNOT00000014236
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42804607	182042367	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	43154682	202446871	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	43154682	202446871	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	43171017	184114403	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	46123260	202447032	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	56043031	202447032	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118275	202447032	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118463	226797303	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	74786664	206665859	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	76539322	202447032	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	78665619	219826953	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	78665619	249053267	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	81689826	221035911	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	81754530	222436696	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	81754530	227146641	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	112456140	212696837	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	112456140	212696837	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	114837527	185876470	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	114837527	185876470	Rat
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	114837527	211674221	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	114837675	212549332	Rat
6907363	Bp357	Blood pressure QTL 357	4.1	0.002	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	129540907	174540907	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	133914684	202447032	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	2	135552573	202446871	Rat
1298076	Bp166	Blood pressure QTL 166		0.0009	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	136445150	202447032	Rat
1581502	Esta3	Estrogen-induced thymic atrophy QTL 3			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	136916935	189599348	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	2	136916935	213594495	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	141194931	223265385	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	141194931	223265385	Rat
71113	Cari2	Carrageenan-induced inflammation QTL 2	2.7	0.009	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	2	141596551	202447032	Rat
724568	Uae13	Urinary albumin excretion QTL 13	4.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	2	143157029	210020885	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	143657411	190602963	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	143657411	190602963	Rat
6903312	Bw112	Body weight QTL 112	3.2	0.0013	body mass (VT:0001259)	body weight (CMO:0000012)	2	143657569	184114274	Rat
61401	Niddm2	Non-insulin dependent diabetes mellitus QTL 2	4.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	144599348	189599348	Rat
1598833	Bp295	Blood pressure QTL 295	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	147798556	192798556	Rat
1641925	Alcrsp2	Alcohol response QTL 2			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	221167075	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	249053267	Rat
1598805	Memor8	Memory QTL 8	3		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	150341585	189039377	Rat
631501	Bp101	Blood pressure QTL 101	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150341684	202446871	Rat
2301966	Bp322	Blood pressure QTL 322	3.58		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150540301	202447032	Rat
1354609	Niddm62	Non-insulin dependent diabetes mellitus QTL 62	4.72	0.000006	insulin secretion trait (VT:0003564)	plasma insulin level (CMO:0000342)	2	150540301	202447032	Rat
12879845	Cm89	Cardiac mass QTL 89		0.008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	152413072	175950118	Rat
12879846	Cm90	Cardiac mass QTL 90		0.011	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	2	152413072	175950118	Rat
12879847	Am4	Aortic mass QTL 4		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	152413072	175950118	Rat
11565180	Kidm56	Kidney mass QTL 56		0.003	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	152413072	175950118	Rat
11565181	Bw176	Body weight QTL 176		0.002	body mass (VT:0001259)	body weight (CMO:0000012)	2	152413072	175950118	Rat
2301415	Cm67	Cardiac mass QTL 67		0.003	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	152413072	175950118	Rat
12879836	Kidm61	Kidney mass QTL 61		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	152413072	185122374	Rat
12879837	Am2	Aortic mass QTL 2		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	152413072	185122374	Rat
12879838	Cm86	Cardiac mass QTL 86		0.002	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	152413072	185122374	Rat
12879839	Cm85	Cardiac mass QTL 85		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	152413072	185122374	Rat
12879840	Bw179	Body weight QTL 179		0.005	body mass (VT:0001259)	body weight (CMO:0000012)	2	152413072	185122374	Rat
1359032	Hrtrt18	Heart rate QTL 18			heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	2	157142078	192625452	Rat
1358900	Bw48	Body weight QTL 48	4.88		body mass (VT:0001259)	body weight (CMO:0000012)	2	157142078	211086598	Rat
8662843	Vetf9	Vascular elastic tissue fragility QTL 9	2.05		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	157142078	226277316	Rat
1302793	Bw16	Body weight QTL 16	5	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	2	157142209	202446871	Rat
7488925	Bp364	Blood pressure QTL 364		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	160564068	205564068	Rat
1358356	Srcrt1	Stress Responsive Cort QTL1	3.66		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	2	161699179	222436696	Rat
7488927	Bp365	Blood pressure QTL 365		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	162765032	207765032	Rat
2306901	Bp337	Blood pressure QTL 337		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	164073756	227146641	Rat
1598838	Bp290	Blood pressure QTL 290	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	166539266	211539266	Rat
1549833	Bp257	Blood pressure QTL 257		0.003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	168354880	185122374	Rat
1331734	Bp204	Blood pressure QTL 204	3.61192		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	168358098	223265385	Rat
2307174	Activ3	Activity QTL 3	4.83	0.000058	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	168594495	213594495	Rat
61469	Bp16	Blood pressure QTL 16	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	169745596	214745596	Rat
70162	Bp63	Blood pressure QTL 63	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	169745596	214745596	Rat

Markers in Region

RH131685

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	169,843,805 - 169,843,955 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	183,503,252 - 183,503,401	NCBI	Rnor6.0
Rnor_5.0	2	202,911,581 - 202,911,730	UniSTS	Rnor5.0
RGSC_v3.4	2	176,274,347 - 176,274,496	UniSTS	RGSC3.4
Celera	2	163,842,280 - 163,842,429	UniSTS
RH 3.4 Map	2	1107.0	UniSTS
Cytogenetic Map	2	q34	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	37	42	26	19	26	6	6	74	35	36	11	6
Low		6	15	15		15	2	5			5		2
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_021763	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232539	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232540	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232541	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232543	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232545	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232546	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282430	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282431	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282432	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282433	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282434	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282435	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282436	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282437	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282438	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY004875	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222383	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U78116	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000014236 ⟹ ENSRNOP00000014236

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	169,843,801 - 169,923,126 (-)	Ensembl
Rnor_6.0 Ensembl	2	183,504,330 - 183,582,553 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000082077 ⟹ ENSRNOP00000070577

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	169,843,818 - 169,923,136 (-)	Ensembl
Rnor_6.0 Ensembl	2	183,504,659 - 183,558,408 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000100457 ⟹ ENSRNOP00000089444

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	169,843,804 - 169,923,142 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000103159 ⟹ ENSRNOP00000078477

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	169,844,884 - 169,878,530 (-)	Ensembl

RefSeq Acc Id:

NM_021763 ⟹ NP_068531

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	172,142,942 - 172,221,165 (-)	NCBI
mRatBN7.2	2	169,844,884 - 169,923,114 (-)	NCBI
Rnor_6.0	2	183,504,330 - 183,582,553 (-)	NCBI
Rnor_5.0	2	202,911,579 - 202,991,075 (-)	NCBI
RGSC_v3.4	2	176,275,425 - 176,353,675 (-)	RGD
Celera	2	163,843,358 - 163,921,484 (-)	RGD

Sequence:

show sequence

GACGCGATTCCCGAGAGCTGCTGCAACCGGGAGAACCCGCGACGGAGCGCTGCCGGCTTCCCTG
CTGACAGACAGGTGTCTGCCATGGCTGAAGAATCTCCCAAAAATTCTGCAGCGGAAATTCCAGT
AACTAGTAATGGGGAAGTTGGTGATGCCCACGAACATGGCTATAATAGGGATTTGAAGCATTCA
TTACCATCTGGACTTGGACTCTCAGAAACTCAAATTACATCTCATGGCTTTGACAGTACCAAAG
AGGGGGTTACTGAAGCAGGAGCATCCCAAGGTTCCTCAGCACCACCTTTGCCATGTGTTCTGTC
TCCCAGCAGGGTGGCAGCTAGTCAGCTGACCCAGCACGCAGGTGGCCAAAGAACACACACAAAA
GGTGGACCAGTTATTTTAGCAGATGAAATTAAAAATCCTGCAATGGAGAAGTTAGAACTTGTTA
GAAAATGGAGTCTCAACACATATAAGTGTACTCGGCAAATTATATCTGAGAAACTAGGCCGTGG
CTCAAGAACCGTGGACCTTGAACTTGAAGCTCAGATTGACATATTAAGAGATAATAAGAAAAAA
TATGAAAACATTCTGAAACTGGCTCAGACCTTGTCGACGCAGCTTTTCCAGATGGTACATACCC
AAAAGCAACTTGGAGATGCATTTGCTGACCTGAGTTTGAAGTCTCTAGAACTCCACGAAGAATT
TGGCTATAATGCAGATACACAGAAGCTGCTGGCTAAAAATGGAGAGACTCTTCTTGGGGCCATT
AATTTTTTCATTGCTAGCGTGAACACCTTGGTGAATAAAACAATTGAAGACACACTAATGACAG
TAAAACAGTACGAGAACGCCAGAATTGAATATGATGCATATCGCACTGATTTGGAAGAACTGAA
CCTTGGACCTCGTGATGCAAACACTCTGCCAAAAATTGAGCAGTCACAGCATCTGTTCCAAATA
CACAAGGAAAAATATGACAAAATGCGCAGTGATGTTTCTGTCAAATTGAAATTTCTTGAGGAAA
ATAAGGTTAAGGTGTTACGCAATCAACTGGCCCTTTTCCACAGTGCTGTTGCTGCCTACTTTGC
TGGGAATCAGAAGCAGCTTGAACAGACTCTCAAGCAGTTCCATGTCAAATTGAAAACCCCAGGA
GTGGATGCCCCGTCTTGGCTTGAAGAACAGTAAACTCACCAGGAAAGAAGGACAGTGTATTGTT
AAACAACTAATAAACTAGTAAGAGTGAAGTAATGTGGGAGGTGTGAGGTGACCACCATCGTAGT
GGCTCCTGCACAGATAGCTTTTAATTTCCCTTTTCATACCGTAACAATTGAGCTGTTAAATTTG
ATGGGAAGGTAGGTGACTTTTATGTAAACATAATTTCTATAATTCTAAACATAATAATCTTCCT
TTTTGAGAAATCCTTTTTGTACTGTGAGGGTTGATGGCTATTTCTGTAGTTTGAAATATTTAAT
ATAGATTTGCACTGACAAGATAAAAGTTCAAGGCTTTTTGGGTCCCAGAAATGAGGGCCAGCTA
TAGTTTTCCAAGGGAGGTTTACATGATTTGTATCAGTGTCAGATATTTTATATATGAATATATT
CAACATCTTTAAGAAGTTCATGTTTGTGTATTATCTTTTAAAAAAAGAAGCTTTTTTGCAGAGT
AAGGTTTATGGTGGTCCTGCAGTCTCACCCCAGGGACAGCTTGATAAAT

hide sequence

RefSeq Acc Id:

XM_006232539 ⟹ XP_006232601

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	172,141,862 - 172,224,464 (-)	NCBI
mRatBN7.2	2	169,843,804 - 169,924,136 (-)	NCBI
Rnor_6.0	2	183,503,250 - 183,582,797 (-)	NCBI
Rnor_5.0	2	202,911,579 - 202,991,075 (-)	NCBI

Sequence:

show sequence

GGCTTGGCTTCTAGAGAGAGGCTGTCCGGGGCTCAAGACCCCGCACTTCCGGTCTCTCACTTCC
GGCTCCGCGGGTAGGGTGCAAGCGCTGGAGGCCGGCTTGAGAGGTCGCCGGTGCAAGTGTCCTC
GGCGGTTGGTTGTCCAGAGCCTGTGACAGCCGCAGCTGCTCCCCGCCCCCGAGGCGTGGGGGAG
GAGACGAAGGAAAAGCTCCCGGTCGCGCTTCCGGTCCCTCCTGCCTCAGGCCGACGCGATTCCC
GAGAGCTGCTGCAACCGGGAGAACCCGCGACGGAGCGCTGCCGGCTTCCCTGCTGACAGACAGG
TGTCTGCCATGGCTGAAGAATCTCCCAAAAATTCTGCAGCGGAAATTCCAGTAACTAGTAATGG
GGAAGTTGGTGATGCCCACGAACATGGCTATAATAGGGATTTGAAGCATTCATTACCATCTGGA
CTTGGACTCTCAGAAACTCAAATTACATCTCATGGCTTTGACAGTACCAAAGAGGGGGTTACTG
AAGCAGGAGCATCCCAAGGTTCCTCAGCACCACCTTTGCCATGTGTTCTGTCTCCCAGCAGGGT
GGCAGCTAGTCAGCTGACCCAGCACGCAGGTGATCTGACTGTTCCTGCAGGTGGCCAAAGAACA
CACACAAAAGGTGGACCAGTTATTTTAGCAGATGAAATTAAAAATCCTGCAATGGAGAAGTTAG
AACTTGTTAGAAAATGGAGTCTCAACACATATAAGTGTACTCGGCAAATTATATCTGAGAAACT
AGGCCGTGGCTCAAGAACCGTGGACCTTGAACTTGAAGCTCAGATTGACATATTAAGAGATAAT
AAGAAAAAATATGAAAACATTCTGAAACTGGCTCAGACCTTGTCGACGCAGCTTTTCCAGATGG
TACATACCCAAAAGCAACTTGGAGATGCATTTGCTGACCTGAGTTTGAAGTCTCTAGAACTCCA
CGAAGAATTTGGCTATAATGCAGATACACAGAAGCTGCTGGCTAAAAATGGAGAGACTCTTCTT
GGGGCCATTAATTTTTTCATTGCTAGCGTGAACACCTTGGTGAATAAAACAATTGAAGACACAC
TAATGACAGTAAAACAGTACGAGAACGCCAGAATTGAATATGATGCATATCGCACTGATTTGGA
AGAACTGAACCTTGGACCTCGTGATGCAAACACTCTGCCAAAAATTGAGCAGTCACAGCATCTG
TTCCAAATACACAAGGAAAAATATGACAAAATGCGCAGTGATGTTTCTGTCAAATTGAAATTTC
TTGAGGAAAATAAGGTTAAGGTGTTACGCAATCAACTGGCCCTTTTCCACAGTGCTGTTGCTGC
CTACTTTGCTGGGAATCAGAAGCAGCTTGAACAGACTCTCAAGCAGTTCCATGTCAAATTGAAA
ACCCCAGGAGTGGATGCCCCGTCTTGGCTTGAAGAACAGTAAACTCACCAGGAAAGAAGGACAG
TGTATTGTTAAACAACTAATAAACTAGTAAGAGTGAAGTAATGTGGGAGGTGTGAGGTGACCAC
CATCGTAGTGGCTCCTGCACAGATAGCTTTTAATTTCCCTTTTCATACCGTAACAATTGAGCTG
TTAAATTTGATGGGAAGGTAGGTGATTTTTATGTAAACATAATTTCTATAATTCTAAACATAAT
AATCTTCCTTTTTGAGAAATCCTTTTTGTACTGTGAGGGTTGATGGCTATTTCTGTAGTTTGAA
ATATTTAATATAGATTTGCACTGACAAGATAAAAGTTCAAGGCTTTTTGGGTCCCAGAAATGAG
GGCCAGCTATAGTTTTCCAAGGGAGGTTTACATGATTTGTATCAGTGTCAGATATTTTATATAT
GAATATATTCAACATCTTTAAGAAGTTCATGTTTGTGTATTATCTTTTAAAAAAAGAAGCTATT
TTGCAGAGTAAGTTTTATGGTGTCCTGCAGTCTCACCCCAGGGACAGCTTGAATAAATGATTGA
TTGGCCCATAGCTTGTTGCAGACACACTCTAAAATTTAATTTGTAACACTGTAATTTTGTTTAG
ATATTTTTAAAGGCCCGGGAGTCACACTGTCATAATTTTTACAACGTATTTAAGCTCATGAATT
TGACAGTTGTGTTTGCAATTTTGATTTATAATGAAATCTGCTTAAGAGGGGTAGGTTTGTTTGT
TTGGGGTTTTTTTTATTTACATGTGGACAGAATGGAAATTCTTAGCAGTTTCTAGAGTAGAAAT
TTGTACATTAAACAGCTAGTTTGGGAGTAAATTCCATTTTAATAGAAGAGAATTTTCAGACCAT
GTTCATTGGCTTCCATGCGTGGCTGTACCACTTAAGCCTTAAATCACAGACATGTGCCTTCGCA
GATGCAGTAATTCTTGCCCAACCATTGTACATACATGAAGAAACTCCTACAGATGACGCAATTC
CTCTGTAACGGAGGGATTTTTTTTTTGTCCTCATAAAACCACACCTGAGGAGGATGGCGAAACC
AACTTTTGAATTTTTTGTTTGGTTTCTCTTGATTCCTCTTGAAGAAGGGGATGATGGGAGAATG
TTTTCCACTTGGTTCATGAAAAGATTGTATAAGGTGTGTGGCGGTCATAGGAAGGGAGGATCCG
GTGCTGGGTTACTTGTGCAGCACTTGGTCTTATGTATGTGGTTGGCGTGTCTACTGTGGTTCCT
CAGTGATGTAATCTTGGTTAAATGTAAAGTTCCTTGATTTTGTCATACGTATAAATGAGTGTTC
TCAGAGACACCACTTCACCTGTTATTTCTATTGTGTCGAAATGAAGTACTTAAAATTACTGTCA
TACGTGACCTTTGTGGACTGTATGATGTGTTACATTTTTAGCTGGTCTTTTTTATTAATACGCC
TGTTTTGAGTGCTTAATATAATGTGATGTGATTGTAAGTCGTGAGCCTGTTTTAAATCATTCCC
TCCTGTGTACTTGTACTCTGAGAACTCTATTTTATTCTTCCTGCAATGGTTAGTTACACTCCGA
GTGTGCCTCTGTGTGAATCCTGTCTTCTTATTAAAGTGGCTGCTGCAGTA

hide sequence

RefSeq Acc Id:

XM_006232540 ⟹ XP_006232602

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	172,141,862 - 172,224,464 (-)	NCBI
mRatBN7.2	2	169,843,804 - 169,924,136 (-)	NCBI
Rnor_6.0	2	183,503,250 - 183,582,797 (-)	NCBI
Rnor_5.0	2	202,911,579 - 202,991,075 (-)	NCBI

Sequence:

show sequence

GGCTTGGCTTCTAGAGAGAGGCTGTCCGGGGCTCAAGACCCCGCACTTCCGGTCTCTCACTTCC
GGCTCCGCGGGTAGGGTGCAAGCGCTGGAGGCCGGCTTGAGAGGTCGCCGGTGCAAGTGTCCTC
GGCGGTTGGTTGTCCAGAGCCTGTGACAGCCGCAGCTGCTCCCCGCCCCCGAGGCGTGGGGGAG
GAGACGAAGGAAAAGCTCCCGGTCGCGCTTCCGGTCCCTCCTGCCTCAGGCCGACGCGATTCCC
GAGAGCTGCTGCAACCGGGAGAACCCGCGACGGAGCGCTGCCGGCTTCCCTGCTGACAGACAGG
TGTCATAACACACTCCTTTTATCCCAGCACTTGGAGATGGCCGAAGATACTTAGAGATCACCCT
CAGCCTGAGGTCTGGGAGAGAGCTCTTGTCTCACACAAGCAAACAAACAACGGGAAAGAAGAAC
CACAACAGCAGAAGTGTCTGCCATGGCTGAAGAATCTCCCAAAAATTCTGCAGCGGAAATTCCA
GTAACTAGTAATGGGGAAGTTGGTGATGCCCACGAACATGGCTATAATAGGGATTTGAAGCATT
CATTACCATCTGGACTTGGACTCTCAGAAACTCAAATTACATCTCATGGCTTTGACAGTACCAA
AGAGGGGGTTACTGAAGCAGGAGCATCCCAAGGTTCCTCAGCACCACCTTTGCCATGTGTTCTG
TCTCCCAGCAGGGTGGCAGCTAGTCAGCTGACCCAGCACGCAGGTGATCTGACTGTTCCTGCAG
GTGGCCAAAGAACACACACAAAAGGTGGACCAGTTATTTTAGCAGATGAAATTAAAAATCCTGC
AATGGAGAAGTTAGAACTTGTTAGAAAATGGAGTCTCAACACATATAAGTGTACTCGGCAAATT
ATATCTGAGAAACTAGGCCGTGGCTCAAGAACCGTGGACCTTGAACTTGAAGCTCAGATTGACA
TATTAAGAGATAATAAGAAAAAATATGAAAACATTCTGAAACTGGCTCAGACCTTGTCGACGCA
GCTTTTCCAGATGGTACATACCCAAAAGCAACTTGGAGATGCATTTGCTGACCTGAGTTTGAAG
TCTCTAGAACTCCACGAAGAATTTGGCTATAATGCAGATACACAGAAGCTGCTGGCTAAAAATG
GAGAGACTCTTCTTGGGGCCATTAATTTTTTCATTGCTAGCGTGAACACCTTGGTGAATAAAAC
AATTGAAGACACACTAATGACAGTAAAACAGTACGAGAACGCCAGAATTGAATATGATGCATAT
CGCACTGATTTGGAAGAACTGAACCTTGGACCTCGTGATGCAAACACTCTGCCAAAAATTGAGC
AGTCACAGCATCTGTTCCAAATACACAAGGAAAAATATGACAAAATGCGCAGTGATGTTTCTGT
CAAATTGAAATTTCTTGAGGAAAATAAGGTTAAGGTGTTACGCAATCAACTGGCCCTTTTCCAC
AGTGCTGTTGCTGCCTACTTTGCTGGGAATCAGAAGCAGCTTGAACAGACTCTCAAGCAGTTCC
ATGTCAAATTGAAAACCCCAGGAGTGGATGCCCCGTCTTGGCTTGAAGAACAGTAAACTCACCA
GGAAAGAAGGACAGTGTATTGTTAAACAACTAATAAACTAGTAAGAGTGAAGTAATGTGGGAGG
TGTGAGGTGACCACCATCGTAGTGGCTCCTGCACAGATAGCTTTTAATTTCCCTTTTCATACCG
TAACAATTGAGCTGTTAAATTTGATGGGAAGGTAGGTGATTTTTATGTAAACATAATTTCTATA
ATTCTAAACATAATAATCTTCCTTTTTGAGAAATCCTTTTTGTACTGTGAGGGTTGATGGCTAT
TTCTGTAGTTTGAAATATTTAATATAGATTTGCACTGACAAGATAAAAGTTCAAGGCTTTTTGG
GTCCCAGAAATGAGGGCCAGCTATAGTTTTCCAAGGGAGGTTTACATGATTTGTATCAGTGTCA
GATATTTTATATATGAATATATTCAACATCTTTAAGAAGTTCATGTTTGTGTATTATCTTTTAA
AAAAAGAAGCTATTTTGCAGAGTAAGTTTTATGGTGTCCTGCAGTCTCACCCCAGGGACAGCTT
GAATAAATGATTGATTGGCCCATAGCTTGTTGCAGACACACTCTAAAATTTAATTTGTAACACT
GTAATTTTGTTTAGATATTTTTAAAGGCCCGGGAGTCACACTGTCATAATTTTTACAACGTATT
TAAGCTCATGAATTTGACAGTTGTGTTTGCAATTTTGATTTATAATGAAATCTGCTTAAGAGGG
GTAGGTTTGTTTGTTTGGGGTTTTTTTTATTTACATGTGGACAGAATGGAAATTCTTAGCAGTT
TCTAGAGTAGAAATTTGTACATTAAACAGCTAGTTTGGGAGTAAATTCCATTTTAATAGAAGAG
AATTTTCAGACCATGTTCATTGGCTTCCATGCGTGGCTGTACCACTTAAGCCTTAAATCACAGA
CATGTGCCTTCGCAGATGCAGTAATTCTTGCCCAACCATTGTACATACATGAAGAAACTCCTAC
AGATGACGCAATTCCTCTGTAACGGAGGGATTTTTTTTTTGTCCTCATAAAACCACACCTGAGG
AGGATGGCGAAACCAACTTTTGAATTTTTTGTTTGGTTTCTCTTGATTCCTCTTGAAGAAGGGG
ATGATGGGAGAATGTTTTCCACTTGGTTCATGAAAAGATTGTATAAGGTGTGTGGCGGTCATAG
GAAGGGAGGATCCGGTGCTGGGTTACTTGTGCAGCACTTGGTCTTATGTATGTGGTTGGCGTGT
CTACTGTGGTTCCTCAGTGATGTAATCTTGGTTAAATGTAAAGTTCCTTGATTTTGTCATACGT
ATAAATGAGTGTTCTCAGAGACACCACTTCACCTGTTATTTCTATTGTGTCGAAATGAAGTACT
TAAAATTACTGTCATACGTGACCTTTGTGGACTGTATGATGTGTTACATTTTTAGCTGGTCTTT
TTTATTAATACGCCTGTTTTGAGTGCTTAATATAATGTGATGTGATTGTAAGTCGTGAGCCTGT
TTTAAATCATTCCCTCCTGTGTACTTGTACTCTGAGAACTCTATTTTATTCTTCCTGCAATGGT
TAGTTACACTCCGAGTGTGCCTCTGTGTGAATCCTGTCTTCTTATTAAAGTGGCTGCTGCAGTA

hide sequence

RefSeq Acc Id:

XM_006232545 ⟹ XP_006232607

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	172,141,862 - 172,224,464 (-)	NCBI
mRatBN7.2	2	169,843,804 - 169,924,136 (-)	NCBI
Rnor_6.0	2	183,503,250 - 183,582,796 (-)	NCBI
Rnor_5.0	2	202,911,579 - 202,991,075 (-)	NCBI

Sequence:

show sequence

GCTTGGCTTCTAGAGAGAGGCTGTCCGGGGCTCAAGACCCCGCACTTCCGGTCTCTCACTTCCG
GCTCCGCGGGTAGGGTGCAAGCGCTGGAGGCCGGCTTGAGAGGTCGCCGGTGCAAGTGTCCTCG
GCGGTTGGTTGTCCAGAGCCTGTGACAGCCGCAGCTGCTCCCCGCCCCCGAGGCGTGGGGGAGG
AGACGAAGGAAAAGCTCCCGGTCGCGCTTCCGGTCCCTCCTGCCTCAGGCCGACGCGATTCCCG
AGAGCTGCTGCAACCGGGAGAACCCGCGACGGAGCGCTGCCGGCTTCCCTGCTGACAGACAGGT
GTCTGCCATGGCTGAAGAATCTCCCAAAAATTCTGCAGCGGAAATTCCAGTAACTAGTAATGGG
GAAGTTGGTGATGCCCACGAACATGGCTATAATAGGGATTTGAAGCATTCATTACCATCTGGAC
TTGGACTCTCAGAAACTCAAATTACATCTCATGGCTTTGACAGTACCAAAGAGGGGGTTACTGA
AGCAGGAGCATCCCAAGGTGGCCAAAGAACACACACAAAAGGTGGACCAGTTATTTTAGCAGAT
GAAATTAAAAATCCTGCAATGGAGAAGTTAGAACTTGTTAGAAAATGGAGTCTCAACACATATA
AGTGTACTCGGCAAATTATATCTGAGAAACTAGGCCGTGGCTCAAGAACCGTGGACCTTGAACT
TGAAGCTCAGATTGACATATTAAGAGATAATAAGAAAAAATATGAAAACATTCTGAAACTGGCT
CAGACCTTGTCGACGCAGCTTTTCCAGATGGTACATACCCAAAAGCAACTTGGAGATGCATTTG
CTGACCTGAGTTTGAAGTCTCTAGAACTCCACGAAGAATTTGGCTATAATGCAGATACACAGAA
GCTGCTGGCTAAAAATGGAGAGACTCTTCTTGGGGCCATTAATTTTTTCATTGCTAGCGTGAAC
ACCTTGGTGAATAAAACAATTGAAGACACACTAATGACAGTAAAACAGTACGAGAACGCCAGAA
TTGAATATGATGCATATCGCACTGATTTGGAAGAACTGAACCTTGGACCTCGTGATGCAAACAC
TCTGCCAAAAATTGAGCAGTCACAGCATCTGTTCCAAATACACAAGGAAAAATATGACAAAATG
CGCAGTGATGTTTCTGTCAAATTGAAATTTCTTGAGGAAAATAAGGTTAAGGTGTTACGCAATC
AACTGGCCCTTTTCCACAGTGCTGTTGCTGCCTACTTTGCTGGGAATCAGAAGCAGCTTGAACA
GACTCTCAAGCAGTTCCATGTCAAATTGAAAACCCCAGGAGTGGATGCCCCGTCTTGGCTTGAA
GAACAGTAAACTCACCAGGAAAGAAGGACAGTGTATTGTTAAACAACTAATAAACTAGTAAGAG
TGAAGTAATGTGGGAGGTGTGAGGTGACCACCATCGTAGTGGCTCCTGCACAGATAGCTTTTAA
TTTCCCTTTTCATACCGTAACAATTGAGCTGTTAAATTTGATGGGAAGGTAGGTGATTTTTATG
TAAACATAATTTCTATAATTCTAAACATAATAATCTTCCTTTTTGAGAAATCCTTTTTGTACTG
TGAGGGTTGATGGCTATTTCTGTAGTTTGAAATATTTAATATAGATTTGCACTGACAAGATAAA
AGTTCAAGGCTTTTTGGGTCCCAGAAATGAGGGCCAGCTATAGTTTTCCAAGGGAGGTTTACAT
GATTTGTATCAGTGTCAGATATTTTATATATGAATATATTCAACATCTTTAAGAAGTTCATGTT
TGTGTATTATCTTTTAAAAAAAGAAGCTATTTTGCAGAGTAAGTTTTATGGTGTCCTGCAGTCT
CACCCCAGGGACAGCTTGAATAAATGATTGATTGGCCCATAGCTTGTTGCAGACACACTCTAAA
ATTTAATTTGTAACACTGTAATTTTGTTTAGATATTTTTAAAGGCCCGGGAGTCACACTGTCAT
AATTTTTACAACGTATTTAAGCTCATGAATTTGACAGTTGTGTTTGCAATTTTGATTTATAATG
AAATCTGCTTAAGAGGGGTAGGTTTGTTTGTTTGGGGTTTTTTTTATTTACATGTGGACAGAAT
GGAAATTCTTAGCAGTTTCTAGAGTAGAAATTTGTACATTAAACAGCTAGTTTGGGAGTAAATT
CCATTTTAATAGAAGAGAATTTTCAGACCATGTTCATTGGCTTCCATGCGTGGCTGTACCACTT
AAGCCTTAAATCACAGACATGTGCCTTCGCAGATGCAGTAATTCTTGCCCAACCATTGTACATA
CATGAAGAAACTCCTACAGATGACGCAATTCCTCTGTAACGGAGGGATTTTTTTTTTGTCCTCA
TAAAACCACACCTGAGGAGGATGGCGAAACCAACTTTTGAATTTTTTGTTTGGTTTCTCTTGAT
TCCTCTTGAAGAAGGGGATGATGGGAGAATGTTTTCCACTTGGTTCATGAAAAGATTGTATAAG
GTGTGTGGCGGTCATAGGAAGGGAGGATCCGGTGCTGGGTTACTTGTGCAGCACTTGGTCTTAT
GTATGTGGTTGGCGTGTCTACTGTGGTTCCTCAGTGATGTAATCTTGGTTAAATGTAAAGTTCC
TTGATTTTGTCATACGTATAAATGAGTGTTCTCAGAGACACCACTTCACCTGTTATTTCTATTG
TGTCGAAATGAAGTACTTAAAATTACTGTCATACGTGACCTTTGTGGACTGTATGATGTGTTAC
ATTTTTAGCTGGTCTTTTTTATTAATACGCCTGTTTTGAGTGCTTAATATAATGTGATGTGATT
GTAAGTCGTGAGCCTGTTTTAAATCATTCCCTCCTGTGTACTTGTACTCTGAGAACTCTATTTT
ATTCTTCCTGCAATGGTTAGTTACACTCCGAGTGTGCCTCTGTGTGAATCCTGTCTTCTTATTA
AAGTGGCTGCTGCAGTA

hide sequence

RefSeq Acc Id:

XM_006232546 ⟹ XP_006232608

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	172,141,862 - 172,224,464 (-)	NCBI
mRatBN7.2	2	169,843,804 - 169,924,136 (-)	NCBI
Rnor_6.0	2	183,503,250 - 183,582,796 (-)	NCBI
Rnor_5.0	2	202,911,579 - 202,991,075 (-)	NCBI

Sequence:

show sequence

GCTTGGCTTCTAGAGAGAGGCTGTCCGGGGCTCAAGACCCCGCACTTCCGGTCTCTCACTTCCG
GCTCCGCGGGTAGGGTGCAAGCGCTGGAGGCCGGCTTGAGAGGTCGCCGGTGCAAGTGTCCTCG
GCGGTTGGTTGTCCAGAGCCTGTGACAGCCGCAGCTGCTCCCCGCCCCCGAGGCGTGGGGGAGG
AGACGAAGGAAAAGCTCCCGGTCGCGCTTCCGGTCCCTCCTGCCTCAGGCCGACGCGATTCCCG
AGAGCTGCTGCAACCGGGAGAACCCGCGACGGAGCGCTGCCGGCTTCCCTGCTGACAGACAGGT
GTCATAACACACTCCTTTTATCCCAGCACTTGGAGATGGCCGAAGATACTTAGAGATCACCCTC
AGCCTGAGGTCTGGGAGAGAGCTCTTGTCTCACACAAGCAAACAAACAACGGGAAAGAAGAACC
ACAACAGCAGAAGTGTCTGCCATGGCTGAAGAATCTCCCAAAAATTCTGCAGCGGAAATTCCAG
TAACTAGTAATGGGGAAGTTGGTGATGCCCACGAACATGGCTATAATAGGGATTTGAAGCATTC
ATTACCATCTGGACTTGGACTCTCAGAAACTCAAATTACATCTCATGGCTTTGACAGTACCAAA
GAGGGGGTTACTGAAGCAGGAGCATCCCAAGGTGGCCAAAGAACACACACAAAAGGTGGACCAG
TTATTTTAGCAGATGAAATTAAAAATCCTGCAATGGAGAAGTTAGAACTTGTTAGAAAATGGAG
TCTCAACACATATAAGTGTACTCGGCAAATTATATCTGAGAAACTAGGCCGTGGCTCAAGAACC
GTGGACCTTGAACTTGAAGCTCAGATTGACATATTAAGAGATAATAAGAAAAAATATGAAAACA
TTCTGAAACTGGCTCAGACCTTGTCGACGCAGCTTTTCCAGATGGTACATACCCAAAAGCAACT
TGGAGATGCATTTGCTGACCTGAGTTTGAAGTCTCTAGAACTCCACGAAGAATTTGGCTATAAT
GCAGATACACAGAAGCTGCTGGCTAAAAATGGAGAGACTCTTCTTGGGGCCATTAATTTTTTCA
TTGCTAGCGTGAACACCTTGGTGAATAAAACAATTGAAGACACACTAATGACAGTAAAACAGTA
CGAGAACGCCAGAATTGAATATGATGCATATCGCACTGATTTGGAAGAACTGAACCTTGGACCT
CGTGATGCAAACACTCTGCCAAAAATTGAGCAGTCACAGCATCTGTTCCAAATACACAAGGAAA
AATATGACAAAATGCGCAGTGATGTTTCTGTCAAATTGAAATTTCTTGAGGAAAATAAGGTTAA
GGTGTTACGCAATCAACTGGCCCTTTTCCACAGTGCTGTTGCTGCCTACTTTGCTGGGAATCAG
AAGCAGCTTGAACAGACTCTCAAGCAGTTCCATGTCAAATTGAAAACCCCAGGAGTGGATGCCC
CGTCTTGGCTTGAAGAACAGTAAACTCACCAGGAAAGAAGGACAGTGTATTGTTAAACAACTAA
TAAACTAGTAAGAGTGAAGTAATGTGGGAGGTGTGAGGTGACCACCATCGTAGTGGCTCCTGCA
CAGATAGCTTTTAATTTCCCTTTTCATACCGTAACAATTGAGCTGTTAAATTTGATGGGAAGGT
AGGTGATTTTTATGTAAACATAATTTCTATAATTCTAAACATAATAATCTTCCTTTTTGAGAAA
TCCTTTTTGTACTGTGAGGGTTGATGGCTATTTCTGTAGTTTGAAATATTTAATATAGATTTGC
ACTGACAAGATAAAAGTTCAAGGCTTTTTGGGTCCCAGAAATGAGGGCCAGCTATAGTTTTCCA
AGGGAGGTTTACATGATTTGTATCAGTGTCAGATATTTTATATATGAATATATTCAACATCTTT
AAGAAGTTCATGTTTGTGTATTATCTTTTAAAAAAAGAAGCTATTTTGCAGAGTAAGTTTTATG
GTGTCCTGCAGTCTCACCCCAGGGACAGCTTGAATAAATGATTGATTGGCCCATAGCTTGTTGC
AGACACACTCTAAAATTTAATTTGTAACACTGTAATTTTGTTTAGATATTTTTAAAGGCCCGGG
AGTCACACTGTCATAATTTTTACAACGTATTTAAGCTCATGAATTTGACAGTTGTGTTTGCAAT
TTTGATTTATAATGAAATCTGCTTAAGAGGGGTAGGTTTGTTTGTTTGGGGTTTTTTTTATTTA
CATGTGGACAGAATGGAAATTCTTAGCAGTTTCTAGAGTAGAAATTTGTACATTAAACAGCTAG
TTTGGGAGTAAATTCCATTTTAATAGAAGAGAATTTTCAGACCATGTTCATTGGCTTCCATGCG
TGGCTGTACCACTTAAGCCTTAAATCACAGACATGTGCCTTCGCAGATGCAGTAATTCTTGCCC
AACCATTGTACATACATGAAGAAACTCCTACAGATGACGCAATTCCTCTGTAACGGAGGGATTT
TTTTTTTGTCCTCATAAAACCACACCTGAGGAGGATGGCGAAACCAACTTTTGAATTTTTTGTT
TGGTTTCTCTTGATTCCTCTTGAAGAAGGGGATGATGGGAGAATGTTTTCCACTTGGTTCATGA
AAAGATTGTATAAGGTGTGTGGCGGTCATAGGAAGGGAGGATCCGGTGCTGGGTTACTTGTGCA
GCACTTGGTCTTATGTATGTGGTTGGCGTGTCTACTGTGGTTCCTCAGTGATGTAATCTTGGTT
AAATGTAAAGTTCCTTGATTTTGTCATACGTATAAATGAGTGTTCTCAGAGACACCACTTCACC
TGTTATTTCTATTGTGTCGAAATGAAGTACTTAAAATTACTGTCATACGTGACCTTTGTGGACT
GTATGATGTGTTACATTTTTAGCTGGTCTTTTTTATTAATACGCCTGTTTTGAGTGCTTAATAT
AATGTGATGTGATTGTAAGTCGTGAGCCTGTTTTAAATCATTCCCTCCTGTGTACTTGTACTCT
GAGAACTCTATTTTATTCTTCCTGCAATGGTTAGTTACACTCCGAGTGTGCCTCTGTGTGAATC
CTGTCTTCTTATTAAAGTGGCTGCTGCAGTA

hide sequence

RefSeq Acc Id:

XM_017591062 ⟹ XP_017446551

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	172,141,862 - 172,224,464 (-)	NCBI
mRatBN7.2	2	169,843,804 - 169,924,136 (-)	NCBI
Rnor_6.0	2	183,503,250 - 183,582,798 (-)	NCBI

Sequence:

show sequence

CGGCTTGGCTTCTAGAGAGAGGCTGTCCGGGGCTCAAGACCCCGCACTTCCGGTCTCTCACTTC
CGGCTCCGCGGGTAGGGTGCAAGCGCTGGAGGCCGGCTTGAGAGGTCGCCGGTGCAAGTGTCCT
CGGCGGTTGGTTGTCCAGAGCCTGTGACAGCCGCAGCTGCTCCCCGCCCCCGAGGCGTGGGGGA
GGAGACGAAGGAAAAGCTCCCGGTCGCGCTTCCGGTCCCTCCTGCCTCAGGCCGACGCGATTCC
CGAGAGCTGCTGCAACCGGGAGAACCCGCGACGGAGCGCTGCCGGCTTCCCTGCTGACAGACAG
GTAGACTCAAACTCTATGCACAGCTGAGTCTGACCTTGAAGTGCTGCTCCTCTTGCCTGCTTCT
CCCACAGGTGTCTGCCATGGCTGAAGAATCTCCCAAAAATTCTGCAGCGGAAATTCCAGTAACT
AGTAATGGGGAAGTTGGTGATGCCCACGAACATGGCTATAATAGGGATTTGAAGCATTCATTAC
CATCTGGACTTGGACTCTCAGAAACTCAAATTACATCTCATGGCTTTGACAGTACCAAAGAGGG
GGTTACTGAAGCAGGAGCATCCCAAGGTTCCTCAGCACCACCTTTGCCATGTGTTCTGTCTCCC
AGCAGGGTGGCAGCTAGTCAGCTGACCCAGCACGCAGGTGATCTGACTGTTCCTGCAGGTGGCC
AAAGAACACACACAAAAGGTGGACCAGTTATTTTAGCAGATGAAATTAAAAATCCTGCAATGGA
GAAGTTAGAACTTGTTAGAAAATGGAGTCTCAACACATATAAGTGTACTCGGCAAATTATATCT
GAGAAACTAGGCCGTGGCTCAAGAACCGTGGACCTTGAACTTGAAGCTCAGATTGACATATTAA
GAGATAATAAGAAAAAATATGAAAACATTCTGAAACTGGCTCAGACCTTGTCGACGCAGCTTTT
CCAGATGGTACATACCCAAAAGCAACTTGGAGATGCATTTGCTGACCTGAGTTTGAAGTCTCTA
GAACTCCACGAAGAATTTGGCTATAATGCAGATACACAGAAGCTGCTGGCTAAAAATGGAGAGA
CTCTTCTTGGGGCCATTAATTTTTTCATTGCTAGCGTGAACACCTTGGTGAATAAAACAATTGA
AGACACACTAATGACAGTAAAACAGTACGAGAACGCCAGAATTGAATATGATGCATATCGCACT
GATTTGGAAGAACTGAACCTTGGACCTCGTGATGCAAACACTCTGCCAAAAATTGAGCAGTCAC
AGCATCTGTTCCAAATACACAAGGAAAAATATGACAAAATGCGCAGTGATGTTTCTGTCAAATT
GAAATTTCTTGAGGAAAATAAGGTTAAGGTGTTACGCAATCAACTGGCCCTTTTCCACAGTGCT
GTTGCTGCCTACTTTGCTGGGAATCAGAAGCAGCTTGAACAGACTCTCAAGCAGTTCCATGTCA
AATTGAAAACCCCAGGAGTGGATGCCCCGTCTTGGCTTGAAGAACAGTAAACTCACCAGGAAAG
AAGGACAGTGTATTGTTAAACAACTAATAAACTAGTAAGAGTGAAGTAATGTGGGAGGTGTGAG
GTGACCACCATCGTAGTGGCTCCTGCACAGATAGCTTTTAATTTCCCTTTTCATACCGTAACAA
TTGAGCTGTTAAATTTGATGGGAAGGTAGGTGATTTTTATGTAAACATAATTTCTATAATTCTA
AACATAATAATCTTCCTTTTTGAGAAATCCTTTTTGTACTGTGAGGGTTGATGGCTATTTCTGT
AGTTTGAAATATTTAATATAGATTTGCACTGACAAGATAAAAGTTCAAGGCTTTTTGGGTCCCA
GAAATGAGGGCCAGCTATAGTTTTCCAAGGGAGGTTTACATGATTTGTATCAGTGTCAGATATT
TTATATATGAATATATTCAACATCTTTAAGAAGTTCATGTTTGTGTATTATCTTTTAAAAAAAG
AAGCTATTTTGCAGAGTAAGTTTTATGGTGTCCTGCAGTCTCACCCCAGGGACAGCTTGAATAA
ATGATTGATTGGCCCATAGCTTGTTGCAGACACACTCTAAAATTTAATTTGTAACACTGTAATT
TTGTTTAGATATTTTTAAAGGCCCGGGAGTCACACTGTCATAATTTTTACAACGTATTTAAGCT
CATGAATTTGACAGTTGTGTTTGCAATTTTGATTTATAATGAAATCTGCTTAAGAGGGGTAGGT
TTGTTTGTTTGGGGTTTTTTTTATTTACATGTGGACAGAATGGAAATTCTTAGCAGTTTCTAGA
GTAGAAATTTGTACATTAAACAGCTAGTTTGGGAGTAAATTCCATTTTAATAGAAGAGAATTTT
CAGACCATGTTCATTGGCTTCCATGCGTGGCTGTACCACTTAAGCCTTAAATCACAGACATGTG
CCTTCGCAGATGCAGTAATTCTTGCCCAACCATTGTACATACATGAAGAAACTCCTACAGATGA
CGCAATTCCTCTGTAACGGAGGGATTTTTTTTTTGTCCTCATAAAACCACACCTGAGGAGGATG
GCGAAACCAACTTTTGAATTTTTTGTTTGGTTTCTCTTGATTCCTCTTGAAGAAGGGGATGATG
GGAGAATGTTTTCCACTTGGTTCATGAAAAGATTGTATAAGGTGTGTGGCGGTCATAGGAAGGG
AGGATCCGGTGCTGGGTTACTTGTGCAGCACTTGGTCTTATGTATGTGGTTGGCGTGTCTACTG
TGGTTCCTCAGTGATGTAATCTTGGTTAAATGTAAAGTTCCTTGATTTTGTCATACGTATAAAT
GAGTGTTCTCAGAGACACCACTTCACCTGTTATTTCTATTGTGTCGAAATGAAGTACTTAAAAT
TACTGTCATACGTGACCTTTGTGGACTGTATGATGTGTTACATTTTTAGCTGGTCTTTTTTATT
AATACGCCTGTTTTGAGTGCTTAATATAATGTGATGTGATTGTAAGTCGTGAGCCTGTTTTAAA
TCATTCCCTCCTGTGTACTTGTACTCTGAGAACTCTATTTTATTCTTCCTGCAATGGTTAGTTA
CACTCCGAGTGTGCCTCTGTGTGAATCCTGTCTTCTTATTAAAGTGGCTGCTGCAGTA

hide sequence

RefSeq Acc Id:

XM_039103009 ⟹ XP_038958937

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	172,141,862 - 172,224,464 (-)	NCBI
mRatBN7.2	2	169,843,804 - 169,924,136 (-)	NCBI

RefSeq Acc Id:

XM_039103010 ⟹ XP_038958938

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	172,141,862 - 172,224,464 (-)	NCBI
mRatBN7.2	2	169,843,804 - 169,924,136 (-)	NCBI

RefSeq Acc Id:

XM_039103012 ⟹ XP_038958940

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	172,141,862 - 172,193,927 (-)	NCBI
mRatBN7.2	2	169,843,804 - 169,895,874 (-)	NCBI

RefSeq Acc Id:

XM_039103013 ⟹ XP_038958941

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	172,158,909 - 172,224,464 (-)	NCBI
mRatBN7.2	2	169,860,826 - 169,924,136 (-)	NCBI

RefSeq Acc Id:

XM_063282430 ⟹ XP_063138500

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	172,141,862 - 172,224,464 (-)	NCBI

RefSeq Acc Id:

XM_063282431 ⟹ XP_063138501

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	172,141,862 - 172,224,464 (-)	NCBI

RefSeq Acc Id:

XM_063282432 ⟹ XP_063138502

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	172,141,862 - 172,224,464 (-)	NCBI

RefSeq Acc Id:

XM_063282433 ⟹ XP_063138503

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	172,141,862 - 172,224,464 (-)	NCBI

RefSeq Acc Id:

XM_063282434 ⟹ XP_063138504

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	172,141,862 - 172,224,464 (-)	NCBI

RefSeq Acc Id:

XM_063282435 ⟹ XP_063138505

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	172,141,862 - 172,224,464 (-)	NCBI

RefSeq Acc Id:

XM_063282436 ⟹ XP_063138506

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	172,141,862 - 172,224,464 (-)	NCBI

RefSeq Acc Id:

XM_063282437 ⟹ XP_063138507

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	172,141,862 - 172,180,684 (-)	NCBI

RefSeq Acc Id:

XM_063282438 ⟹ XP_063138508

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	172,141,862 - 172,186,546 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_068531	(Get FASTA)	NCBI Sequence Viewer
	XP_006232601	(Get FASTA)	NCBI Sequence Viewer
	XP_006232602	(Get FASTA)	NCBI Sequence Viewer
	XP_006232607	(Get FASTA)	NCBI Sequence Viewer
	XP_006232608	(Get FASTA)	NCBI Sequence Viewer
	XP_017446551	(Get FASTA)	NCBI Sequence Viewer
	XP_038958937	(Get FASTA)	NCBI Sequence Viewer
	XP_038958938	(Get FASTA)	NCBI Sequence Viewer
	XP_038958940	(Get FASTA)	NCBI Sequence Viewer
	XP_038958941	(Get FASTA)	NCBI Sequence Viewer
	XP_063138500	(Get FASTA)	NCBI Sequence Viewer
	XP_063138501	(Get FASTA)	NCBI Sequence Viewer
	XP_063138502	(Get FASTA)	NCBI Sequence Viewer
	XP_063138503	(Get FASTA)	NCBI Sequence Viewer
	XP_063138504	(Get FASTA)	NCBI Sequence Viewer
	XP_063138505	(Get FASTA)	NCBI Sequence Viewer
	XP_063138506	(Get FASTA)	NCBI Sequence Viewer
	XP_063138507	(Get FASTA)	NCBI Sequence Viewer
	XP_063138508	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB36788	(Get FASTA)	NCBI Sequence Viewer
	AAF91077	(Get FASTA)	NCBI Sequence Viewer
	EDM00818	(Get FASTA)	NCBI Sequence Viewer
	EDM00819	(Get FASTA)	NCBI Sequence Viewer
	EDM00820	(Get FASTA)	NCBI Sequence Viewer
	EDM00821	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000014236
	ENSRNOP00000014236.5
	ENSRNOP00000070577
	ENSRNOP00000070577.2
	ENSRNOP00000078477.1
	ENSRNOP00000089444
	ENSRNOP00000089444.1
GenBank Protein	Q9JHU5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_068531 ⟸ NM_021763

- UniProtKB:

Q9JHU5 (UniProtKB/Swiss-Prot), A6J5W8 (UniProtKB/TrEMBL), A0A0G2JYA2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAEESPKNSAAEIPVTSNGEVGDAHEHGYNRDLKHSLPSGLGLSETQITSHGFDSTKEGVTEAG
ASQGSSAPPLPCVLSPSRVAASQLTQHAGGQRTHTKGGPVILADEIKNPAMEKLELVRKWSLNT
YKCTRQIISEKLGRGSRTVDLELEAQIDILRDNKKKYENILKLAQTLSTQLFQMVHTQKQLGDA
FADLSLKSLELHEEFGYNADTQKLLAKNGETLLGAINFFIASVNTLVNKTIEDTLMTVKQYENA
RIEYDAYRTDLEELNLGPRDANTLPKIEQSQHLFQIHKEKYDKMRSDVSVKLKFLEENKVKVLR
NQLALFHSAVAAYFAGNQKQLEQTLKQFHVKLKTPGVDAPSWLEEQ

hide sequence

RefSeq Acc Id:	XP_006232601 ⟸ XM_006232539
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JYA2 (UniProtKB/TrEMBL), A0A8L2Q6T7 (UniProtKB/TrEMBL), A6J5X0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAEESPKNSAAEIPVTSNGEVGDAHEHGYNRDLKHSLPSGLGLSETQITSHGFDSTKEGVTEAG ASQGSSAPPLPCVLSPSRVAASQLTQHAGDLTVPAGGQRTHTKGGPVILADEIKNPAMEKLELV RKWSLNTYKCTRQIISEKLGRGSRTVDLELEAQIDILRDNKKKYENILKLAQTLSTQLFQMVHT QKQLGDAFADLSLKSLELHEEFGYNADTQKLLAKNGETLLGAINFFIASVNTLVNKTIEDTLMT VKQYENARIEYDAYRTDLEELNLGPRDANTLPKIEQSQHLFQIHKEKYDKMRSDVSVKLKFLEE NKVKVLRNQLALFHSAVAAYFAGNQKQLEQTLKQFHVKLKTPGVDAPSWLEEQ hide sequence

RefSeq Acc Id:	XP_006232602 ⟸ XM_006232540
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JYA2 (UniProtKB/TrEMBL), A0A8L2Q6T7 (UniProtKB/TrEMBL), A6J5X0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAEESPKNSAAEIPVTSNGEVGDAHEHGYNRDLKHSLPSGLGLSETQITSHGFDSTKEGVTEAG ASQGSSAPPLPCVLSPSRVAASQLTQHAGDLTVPAGGQRTHTKGGPVILADEIKNPAMEKLELV RKWSLNTYKCTRQIISEKLGRGSRTVDLELEAQIDILRDNKKKYENILKLAQTLSTQLFQMVHT QKQLGDAFADLSLKSLELHEEFGYNADTQKLLAKNGETLLGAINFFIASVNTLVNKTIEDTLMT VKQYENARIEYDAYRTDLEELNLGPRDANTLPKIEQSQHLFQIHKEKYDKMRSDVSVKLKFLEE NKVKVLRNQLALFHSAVAAYFAGNQKQLEQTLKQFHVKLKTPGVDAPSWLEEQ hide sequence

RefSeq Acc Id:	XP_006232607 ⟸ XM_006232545
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6ACN3 (UniProtKB/TrEMBL), A0A0G2JYA2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAEESPKNSAAEIPVTSNGEVGDAHEHGYNRDLKHSLPSGLGLSETQITSHGFDSTKEGVTEAG ASQGGQRTHTKGGPVILADEIKNPAMEKLELVRKWSLNTYKCTRQIISEKLGRGSRTVDLELEA QIDILRDNKKKYENILKLAQTLSTQLFQMVHTQKQLGDAFADLSLKSLELHEEFGYNADTQKLL AKNGETLLGAINFFIASVNTLVNKTIEDTLMTVKQYENARIEYDAYRTDLEELNLGPRDANTLP KIEQSQHLFQIHKEKYDKMRSDVSVKLKFLEENKVKVLRNQLALFHSAVAAYFAGNQKQLEQTL KQFHVKLKTPGVDAPSWLEEQ hide sequence

RefSeq Acc Id:	XP_006232608 ⟸ XM_006232546
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6ACN3 (UniProtKB/TrEMBL), A0A0G2JYA2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAEESPKNSAAEIPVTSNGEVGDAHEHGYNRDLKHSLPSGLGLSETQITSHGFDSTKEGVTEAG ASQGGQRTHTKGGPVILADEIKNPAMEKLELVRKWSLNTYKCTRQIISEKLGRGSRTVDLELEA QIDILRDNKKKYENILKLAQTLSTQLFQMVHTQKQLGDAFADLSLKSLELHEEFGYNADTQKLL AKNGETLLGAINFFIASVNTLVNKTIEDTLMTVKQYENARIEYDAYRTDLEELNLGPRDANTLP KIEQSQHLFQIHKEKYDKMRSDVSVKLKFLEENKVKVLRNQLALFHSAVAAYFAGNQKQLEQTL KQFHVKLKTPGVDAPSWLEEQ hide sequence

RefSeq Acc Id:	XP_017446551 ⟸ XM_017591062
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JYA2 (UniProtKB/TrEMBL), A0A8L2Q6T7 (UniProtKB/TrEMBL), A6J5X0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAEESPKNSAAEIPVTSNGEVGDAHEHGYNRDLKHSLPSGLGLSETQITSHGFDSTKEGVTEAG ASQGSSAPPLPCVLSPSRVAASQLTQHAGDLTVPAGGQRTHTKGGPVILADEIKNPAMEKLELV RKWSLNTYKCTRQIISEKLGRGSRTVDLELEAQIDILRDNKKKYENILKLAQTLSTQLFQMVHT QKQLGDAFADLSLKSLELHEEFGYNADTQKLLAKNGETLLGAINFFIASVNTLVNKTIEDTLMT VKQYENARIEYDAYRTDLEELNLGPRDANTLPKIEQSQHLFQIHKEKYDKMRSDVSVKLKFLEE NKVKVLRNQLALFHSAVAAYFAGNQKQLEQTLKQFHVKLKTPGVDAPSWLEEQ hide sequence

RefSeq Acc Id:

ENSRNOP00000070577 ⟸ ENSRNOT00000082077

RefSeq Acc Id:

ENSRNOP00000014236 ⟸ ENSRNOT00000014236

RefSeq Acc Id:	XP_038958937 ⟸ XM_039103009
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2Q6T7 (UniProtKB/TrEMBL), A6J5X0 (UniProtKB/TrEMBL), A0A0G2JYA2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038958938 ⟸ XM_039103010
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2Q6T7 (UniProtKB/TrEMBL), A6J5X0 (UniProtKB/TrEMBL), A0A0G2JYA2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038958940 ⟸ XM_039103012
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038958941 ⟸ XM_039103013
- Peptide Label:	isoform X6

RefSeq Acc Id:

ENSRNOP00000089444 ⟸ ENSRNOT00000100457

RefSeq Acc Id:

ENSRNOP00000078477 ⟸ ENSRNOT00000103159

RefSeq Acc Id:	XP_063138503 ⟸ XM_063282433
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063138504 ⟸ XM_063282434
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063138500 ⟸ XM_063282430
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063138506 ⟸ XM_063282436
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063138505 ⟸ XM_063282435
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063138502 ⟸ XM_063282432
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063138501 ⟸ XM_063282431
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063138508 ⟸ XM_063282438
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063138507 ⟸ XM_063282437
- Peptide Label:	isoform X4

Protein Domains

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9JHU5-F1-model_v2	AlphaFold	Q9JHU5	1-366	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691401

Promoter ID:

EPDNEW_R1926

Type:

multiple initiation site

Name:

Arfip1_1

Description:

ADP-ribosylation factor interacting protein 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	183,582,568 - 183,582,628	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:708401	AgrOrtholog
BioCyc Gene	G2FUF-52632	BioCyc
Ensembl Genes	ENSRNOG00000010533	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000014236.7	UniProtKB/TrEMBL
	ENSRNOT00000082077.2	UniProtKB/TrEMBL
	ENSRNOT00000100457.1	UniProtKB/TrEMBL
	ENSRNOT00000103159.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1270.60	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	AH/BAR_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	AH_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Arfaptin_fam	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:60382	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene	60382	ENTREZGENE
PANTHER	PTHR12141	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR12141:SF4	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Arfaptin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Arfip1	PhenoGen
PROSITE	PS50870	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000010533	RatGTEx
SMART	Arfaptin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF103657	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2JYA2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZL02_RAT	UniProtKB/TrEMBL
	A0A8I6ACN3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2Q6T7	ENTREZGENE, UniProtKB/TrEMBL
	A6J5W8	ENTREZGENE, UniProtKB/TrEMBL
	A6J5X0	ENTREZGENE, UniProtKB/TrEMBL
	ARFP1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-07-08	Arfip1	ADP-ribosylation factor interacting protein 1	LOC60382	arfaptin 1	Symbol and Name updated	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar