Rps19 (ribosomal protein S19) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Rps19 (ribosomal protein S19) Rattus norvegicus
Analyze
Symbol: Rps19
Name: ribosomal protein S19
RGD ID: 68440
Description: Enables translation initiation factor binding activity. A structural constituent of ribosome. Predicted to be involved in several processes, including monocyte chemotaxis; regulation of respiratory burst involved in inflammatory response; and ribosomal small subunit biogenesis. Predicted to act upstream of or within Notch signaling pathway. Located in nucleolus. Part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia and Diamond-Blackfan anemia 1. Orthologous to human RPS19 (ribosomal protein S19); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 40S ribosomal protein S19; ribosomal protein S19-like2; Rps19l2; small ribosomal subunit protein eS19
RGD Orthologs
Human
Mouse
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Rps19-ps18   Rps19l1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8189,608,408 - 89,614,390 (+)NCBIGRCr8
mRatBN7.2180,480,718 - 80,486,511 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl180,480,951 - 80,486,508 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx185,873,345 - 85,879,047 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0194,424,173 - 94,429,875 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0187,629,105 - 87,634,807 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0916,802,280 - 16,807,982 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl181,750,928 - 81,756,627 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0183,007,889 - 83,013,590 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4180,176,649 - 80,182,351 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1180,254,777 - 80,260,460 (+)NCBI
Celera174,928,360 - 74,934,062 (+)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-nitrofluorene  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (EXP)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
acetylsalicylic acid  (ISO)
aflatoxin B1  (EXP)
amiodarone  (EXP)
ammonium chloride  (EXP)
arsenite(3-)  (ISO)
benzbromarone  (EXP)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
bortezomib  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
clofibrate  (EXP)
cobalt dichloride  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dibutyl phthalate  (EXP)
dichlorine  (EXP)
diethylstilbestrol  (EXP,ISO)
dihydroartemisinin  (ISO)
doxorubicin  (ISO)
enzalutamide  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
fenbuconazole  (ISO)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (EXP)
furan  (EXP)
genistein  (EXP,ISO)
gentamycin  (EXP)
glafenine  (EXP)
ivermectin  (ISO)
L-ethionine  (EXP)
lead diacetate  (ISO)
melatonin  (ISO)
Mesaconitine  (EXP)
methapyrilene  (EXP,ISO)
methotrexate  (ISO)
methoxychlor  (EXP)
N-nitrosodimethylamine  (EXP)
nimesulide  (EXP)
nitrofen  (EXP)
omeprazole  (EXP)
ozone  (EXP)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP,ISO)
PhIP  (EXP)
piperonyl butoxide  (EXP)
pirinixic acid  (EXP,ISO)
resveratrol  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sodium fluoride  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichloroethene  (EXP)
tungsten  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. Identification of proteins of the 40 S ribosomal subunit involved in interaction with initiation factor eIF-2 in the quaternary initiation complex by means of monospecific antibodies. Bommer UA, etal., FEBS Lett. 1988 Jun 6;233(1):114-8.
3. Nonsense-mediated and nonstop decay of ribosomal protein S19 mRNA in Diamond-Blackfan anemia. Chatr-Aryamontri A, etal., Hum Mutat. 2004 Dec;24(6):526-33.
4. Isolation of eukaryotic ribosomal proteins. Purification and characterization of the 40 S ribosomal subunit proteins Sa, Sc, S3a, S3b, S5', S9, S10, S11, S12, S14, S15, S15', S16, S17, S18, S19, S20, S21, S26, S27', and S29. Collatz E, etal., J Biol Chem. 1977 Dec 25;252(24):9071-80.
5. The gene encoding ribosomal protein S19 is mutated in Diamond-Blackfan anaemia. Draptchinskaia N, etal., Nat Genet. 1999 Feb;21(2):169-75.
6. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
7. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
8. An overview of pre-ribosomal RNA processing in eukaryotes. Henras AK, etal., Wiley Interdiscip Rev RNA. 2015 Mar-Apr;6(2):225-42. doi: 10.1002/wrna.1269. Epub 2014 Oct 27.
9. Immunoelectron microscopic studies on the location of ribosomal proteins on the surface of the 40S ribosomal subunit from rat liver. Lutsch G, etal., Eur J Cell Biol. 1990 Feb;51(1):140-50.
10. A novel nucleolar protein interacts with ribosomal protein S19. Maeda N, etal., Biochem Biophys Res Commun. 2006 Jan 6;339(1):41-6. Epub 2005 Nov 8.
11. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
12. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
13. Functional dichotomy of ribosomal proteins during the synthesis of mammalian 40S ribosomal subunits. O'Donohue MF, etal., J Cell Biol. 2010 Sep 6;190(5):853-66. doi: 10.1083/jcb.201005117.
14. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
15. GOA pipeline RGD automated data pipeline
16. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
17. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
18. Comprehensive gene review and curation RGD comprehensive gene curation
19. Both endonucleolytic and exonucleolytic cleavage mediate ITS1 removal during human ribosomal RNA processing. Sloan KE, etal., J Cell Biol. 2013 Mar 4;200(5):577-88. doi: 10.1083/jcb.201207131. Epub 2013 Feb 25.
20. The primary structure of rat ribosomal protein S19. Suzuki K, etal., Biochimie 1990 Apr;72(4):299-302.
21. Mass spectrometric analysis of the human 40S ribosomal subunit: native and HCV IRES-bound complexes. Yu Y, etal., Protein Sci. 2005 Jun;14(6):1438-46. Epub 2005 May 9.
Additional References at PubMed
PMID:8706699   PMID:11226885   PMID:11716516   PMID:12477932   PMID:12586610   PMID:15019208   PMID:15489334   PMID:15750715   PMID:16266891   PMID:16452087   PMID:16990592   PMID:17053056  
PMID:17517689   PMID:18697920   PMID:19155217   PMID:19946888   PMID:20458337   PMID:21423176   PMID:21700703   PMID:22681889   PMID:23376485   PMID:23979707   PMID:25446530   PMID:29476059  
PMID:35352799  


Genomics

Comparative Map Data
Rps19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8189,608,408 - 89,614,390 (+)NCBIGRCr8
mRatBN7.2180,480,718 - 80,486,511 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl180,480,951 - 80,486,508 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx185,873,345 - 85,879,047 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0194,424,173 - 94,429,875 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0187,629,105 - 87,634,807 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0916,802,280 - 16,807,982 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl181,750,928 - 81,756,627 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0183,007,889 - 83,013,590 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4180,176,649 - 80,182,351 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1180,254,777 - 80,260,460 (+)NCBI
Celera174,928,360 - 74,934,062 (+)NCBICelera
Cytogenetic Map1q21NCBI
RPS19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381941,860,255 - 41,872,925 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1941,860,255 - 41,872,925 (+)EnsemblGRCh38hg38GRCh38
GRCh371942,364,325 - 42,376,993 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361947,055,828 - 47,067,324 (+)NCBINCBI36Build 36hg18NCBI36
Build 341947,055,827 - 47,067,322NCBI
Celera1939,163,675 - 39,175,171 (+)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1938,795,270 - 38,806,767 (+)NCBIHuRef
CHM1_11942,365,453 - 42,376,951 (+)NCBICHM1_1
T2T-CHM13v2.01944,679,738 - 44,692,405 (+)NCBIT2T-CHM13v2.0
Rps19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39724,584,013 - 24,589,236 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl724,583,796 - 24,589,231 (+)EnsemblGRCm39 Ensembl
GRCm38724,884,592 - 24,889,811 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl724,884,371 - 24,889,806 (+)EnsemblGRCm38mm10GRCm38
MGSCv37725,669,733 - 25,674,821 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36724,593,474 - 24,598,562 (+)NCBIMGSCv36mm8
Celera719,500,610 - 19,505,697 (+)NCBICelera
Cytogenetic Map7A3NCBI
cM Map713.41NCBI
RPS19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl650,000,948 - 50,010,341 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1650,003,198 - 50,010,135 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2646,056,524 - 46,063,482 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPS19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1636,067,959 - 36,085,581 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607314,302,605 - 14,313,949 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624907810,984 - 818,614 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624907811,069 - 818,218 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rps19
14 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:278
Count of miRNA genes:107
Interacting mature miRNAs:112
Transcripts:ENSRNOT00000027246, ENSRNOT00000073160
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)15673266898773277Rat
61344Bp29Blood pressure QTL 297.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)178350581123350581Rat
61433Cia2Collagen induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)17843075491209302Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)17219768090508767Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)165789093115540829Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)177876254106047988Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)177494165122494165Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)156949932101949932Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)15389511782174945Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15389511782174945Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14936146582174945Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)15386304190532583Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)178430536123430536Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)166023617118608521Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)177857876122857876Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 37 55 39 19 39 2 3 72 34 39 11 2
Low 1 6 2 2 2 6 8 2 5 8 6
Below cutoff 1 23 18 18 3 18 1 31 16 18 3

Sequence


RefSeq Acc Id: ENSRNOT00000027246   ⟹   ENSRNOP00000027246
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl180,480,951 - 80,486,507 (+)Ensembl
Rnor_6.0 Ensembl181,750,928 - 81,756,627 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000100988   ⟹   ENSRNOP00000091536
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl180,481,102 - 80,486,254 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000113827   ⟹   ENSRNOP00000095730
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl180,481,102 - 80,486,508 (+)Ensembl
RefSeq Acc Id: NM_001037346   ⟹   NP_001032423
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8189,608,688 - 89,614,390 (+)NCBI
mRatBN7.2180,480,809 - 80,486,511 (+)NCBI
Rnor_6.0916,802,280 - 16,807,982 (-)NCBI
Rnor_5.0183,007,889 - 83,013,590 (+)NCBI
RGSC_v3.4180,176,649 - 80,182,351 (+)RGD
Celera174,928,360 - 74,934,062 (+)RGD
Sequence:
RefSeq Acc Id: XM_006228411   ⟹   XP_006228473
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8189,608,694 - 89,614,390 (+)NCBI
mRatBN7.2180,480,860 - 80,486,511 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063283883   ⟹   XP_063139953
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8189,608,408 - 89,614,390 (+)NCBI
RefSeq Acc Id: XM_063283886   ⟹   XP_063139956
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8189,608,771 - 89,614,390 (+)NCBI
RefSeq Acc Id: XM_063283888   ⟹   XP_063139958
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8189,608,720 - 89,614,390 (+)NCBI
RefSeq Acc Id: XM_063283889   ⟹   XP_063139959
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8189,608,408 - 89,613,263 (+)NCBI
RefSeq Acc Id: XM_063283893   ⟹   XP_063139963
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8189,608,737 - 89,614,390 (+)NCBI
RefSeq Acc Id: NP_001032423   ⟸   NM_001037346
- UniProtKB: P17074 (UniProtKB/Swiss-Prot),   A6J917 (UniProtKB/TrEMBL),   F1LYF3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000027246   ⟸   ENSRNOT00000027246
RefSeq Acc Id: XP_006228473   ⟸   XM_006228411
- Peptide Label: isoform X3
- UniProtKB: P17074 (UniProtKB/Swiss-Prot),   A6J917 (UniProtKB/TrEMBL),   F1LYF3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000095730   ⟸   ENSRNOT00000113827
RefSeq Acc Id: ENSRNOP00000091536   ⟸   ENSRNOT00000100988
RefSeq Acc Id: XP_063139953   ⟸   XM_063283883
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063139959   ⟸   XM_063283889
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063139958   ⟸   XM_063283888
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063139963   ⟸   XM_063283893
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063139956   ⟸   XM_063283886
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P17074-F1-model_v2 AlphaFold P17074 1-145 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696524
Promoter ID:EPDNEW_R7043
Type:multiple initiation site
Name:Rps19_1
Description:ribosomal protein S19
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0916,807,965 - 16,808,025EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:68440 AgrOrtholog
BioCyc Gene G2FUF-60412 BioCyc
Ensembl Genes ENSRNOG00000031474 UniProtKB/TrEMBL
  ENSRNOG00000037897 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000027246.6 UniProtKB/TrEMBL
  ENSRNOT00000041802.4 UniProtKB/TrEMBL
  ENSRNOT00000100988.1 UniProtKB/TrEMBL
  ENSRNOT00000113827.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7308408 IMAGE-MGC_LOAD
InterPro Ribosomal_S19e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S19e_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:29287 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:105801 IMAGE-MGC_LOAD
NCBI Gene 29287 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S19 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11710 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribosomal_S19e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rps19 PhenoGen
PROSITE RIBOSOMAL_S19E UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000031474 RatGTEx
  ENSRNOG00000037897 RatGTEx
SMART Ribosomal_S19e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6AFS6_RAT UniProtKB/TrEMBL
  A0A8I6GLA3_RAT UniProtKB/TrEMBL
  A0A8L2QEH3_RAT UniProtKB/TrEMBL
  A6J917 ENTREZGENE, UniProtKB/TrEMBL
  F1LYF3 ENTREZGENE, UniProtKB/TrEMBL
  P17074 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-10-01 Rps19  ribosomal protein S19  Rps19l2  ribosomal protein S19-like2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2018-05-04 Rps19l2  ribosomal protein S19-like2  Rps19  ribosomal protein S19  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Rps19  ribosomal protein S19      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_other 15-18 copies of the gene 68299
gene_protein 144 amino acids 68299