Psip1 (PC4 and SRSF1 interacting protein 1)

Gene: Psip1 (PC4 and SRSF1 interacting protein 1) Rattus norvegicus

Analyze

Symbol:

Psip1

Name:

PC4 and SRSF1 interacting protein 1

RGD ID:

631439

Description:

Enables supercoiled DNA binding activity. Predicted to be involved in several processes, including mRNA 5'-splice site recognition; positive regulation of transcription by RNA polymerase II; and response to heat. Part of euchromatin and heterochromatin. Orthologous to human PSIP1 (PC4 and SRSF1 interacting protein 1); INTERACTS WITH 1,3-dinitrobenzene; 17alpha-ethynylestradiol; 2,3,4,7,8-Pentachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Ledgf; lens epithelium-derived growth factor; PC4 and SFRS1 interacting protein 1; PC4 and SFRS1 interacting protein 2; PC4 and SFRS1-interacting protein; Psip2; SBP75; supercoiled DNA binding protein 75

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PSIP1 (PC4 and SRSF1 interacting protein 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Psip1 (PC4 and SFRS1 interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Psip1 (PC4 and SRSF1 interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PSIP1 (PC4 and SRSF1 interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PSIP1 (PC4 and SFRS1 interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Psip1 (PC4 and SRSF1 interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PSIP1 (PC4 and SFRS1 interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PSIP1 (PC4 and SRSF1 interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Psip1 (PC4 and SRSF1 interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Psip1 (PC4 and SFRS1 interacting protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	PSIP1 (PC4 and SRSF1 interacting protein 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	C06A5.3	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	CG7946	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	psip1a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	psip1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	102,892,929 - 102,925,191 (-)	NCBI		GRCr8
mRatBN7.2	5	97,847,010 - 97,879,280 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	97,847,015 - 97,879,257 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	100,239,507 - 100,270,774 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	102,032,078 - 102,063,318 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	102,050,380 - 102,081,647 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	101,555,691 - 101,588,659 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	101,555,694 - 101,588,598 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	105,568,304 - 105,601,260 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	102,304,948 - 102,336,608 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	102,310,173 - 102,341,834 (-)	NCBI
Celera	5	96,399,960 - 96,431,195 (-)	NCBI		Celera
Cytogenetic Map	5	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acute myeloid leukemia (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

1,3-dinitrobenzene (EXP)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (ISO)

2,3,4,7,8-Pentachlorodibenzofuran (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

aflatoxin M1 (ISO)

all-trans-retinoic acid (ISO)

amiodarone (ISO)

ammonium chloride (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

azoxystrobin (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

Brodifacoum (EXP)

caffeine (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

clotrimazole (EXP)

cobalt dichloride (EXP,ISO)

copper atom (EXP)

copper(0) (EXP)

coumarin (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (EXP)

deoxynivalenol (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

Enterolactone (ISO)

enzyme inhibitor (ISO)

epoxiconazole (ISO)

ethanol (ISO)

fenvalerate (EXP)

folic acid (ISO)

FR900359 (ISO)

fulvestrant (ISO)

gentamycin (EXP)

hydroxyurea (ISO)

isoprenaline (ISO)

ivermectin (ISO)

levetiracetam (EXP)

methapyrilene (EXP)

methidathion (ISO)

methimazole (EXP)

miconazole (ISO)

oxaliplatin (EXP)

ozone (ISO)

p-anisidine (ISO)

paracetamol (ISO)

perfluorooctanoic acid (ISO)

phenylmercury acetate (ISO)

phenytoin (EXP)

picoxystrobin (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

potassium dichromate (ISO)

pregnenolone 16alpha-carbonitrile (EXP)

propiconazole (ISO)

quercetin (ISO)

resveratrol (EXP,ISO)

rifampicin (ISO)

rotenone (ISO)

SB 431542 (ISO)

selenium atom (ISO)

senecionine (ISO)

sodium arsenite (ISO)

Soman (EXP)

sunitinib (ISO)

tert-butyl hydroperoxide (ISO)

tetrachloromethane (ISO)

tetraphene (ISO)

thapsigargin (EXP)

topotecan (EXP)

triadimefon (EXP)

Tributyltin oxide (ISO)

triphenyl phosphate (EXP)

triptonide (ISO)

trovafloxacin (ISO)

tungsten (ISO)

valdecoxib (EXP)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin remodeling (IBA)

mRNA 5'-splice site recognition (IEA,ISO,ISS)

positive regulation of transcription by RNA polymerase II (ISO,ISS)

response to heat (IEA,ISO,ISS)

response to oxidative stress (IEA,ISO,ISS)

Cellular Component

euchromatin (IDA)

heterochromatin (IDA,ISO,ISS)

nuclear periphery (ISO,ISS)

nucleolus (IDA,ISO)

nucleoplasm (IEA,ISO,ISS)

nucleus (IBA,IEA,ISO,ISS)

Molecular Function

chromatin binding (ISO,ISS)

DNA binding (IEA)

DNA-binding transcription factor binding (ISO,ISS)

protein binding (ISO)

supercoiled DNA binding (IDA)

transcription coactivator activity (ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Cellular distribution of lens epithelium-derived growth factor (LEDGF) in the rat eye: loss of LEDGF from nuclei of differentiating cells.	Kubo E, etal., Histochem Cell Biol 2003 Apr;119(4):289-99.
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Nuclear protein LEDGF/p75 recognizes supercoiled DNA by a novel DNA-binding domain.	Tsutsui KM, etal., Nucleic Acids Res. 2011 Jul;39(12):5067-81. doi: 10.1093/nar/gkr088. Epub 2011 Feb 23.

Additional References at PubMed

PMID:3366776	PMID:9822615	PMID:9885563	PMID:11027629	PMID:11512661	PMID:12477932	PMID:12796494	PMID:18652779	PMID:20974633	PMID:22658674	PMID:22681889	PMID:26721387

Genomics

Comparative Map Data

Psip1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	102,892,929 - 102,925,191 (-)	NCBI		GRCr8
mRatBN7.2	5	97,847,010 - 97,879,280 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	97,847,015 - 97,879,257 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	100,239,507 - 100,270,774 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	102,032,078 - 102,063,318 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	102,050,380 - 102,081,647 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	101,555,691 - 101,588,659 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	101,555,694 - 101,588,598 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	105,568,304 - 105,601,260 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	102,304,948 - 102,336,608 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	102,310,173 - 102,341,834 (-)	NCBI
Celera	5	96,399,960 - 96,431,195 (-)	NCBI		Celera
Cytogenetic Map	5	q31	NCBI

PSIP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	15,464,066 - 15,510,970 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	15,464,066 - 15,510,995 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	15,464,064 - 15,510,968 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	15,454,064 - 15,500,982 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	15,454,065 - 15,500,982	NCBI
Celera	9	15,397,404 - 15,444,340 (-)	NCBI		Celera
Cytogenetic Map	9	p22.3	NCBI
HuRef	9	15,427,681 - 15,474,611 (-)	NCBI		HuRef
CHM1_1	9	15,464,652 - 15,511,590 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	15,475,998 - 15,522,882 (-)	NCBI		T2T-CHM13v2.0

Psip1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	83,373,917 - 83,404,700 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	83,373,917 - 83,404,696 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	83,455,680 - 83,486,463 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	83,455,680 - 83,486,459 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	83,101,584 - 83,132,294 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	82,926,911 - 82,957,621 (-)	NCBI		MGSCv36	mm8
Celera	4	81,990,132 - 82,020,322 (-)	NCBI		Celera
Cytogenetic Map	4	C3	NCBI
cM Map	4	39.46	NCBI

Psip1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955434	18,312,646 - 18,357,761 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955434	18,312,646 - 18,357,753 (-)	NCBI	ChiLan1.0	ChiLan1.0

PSIP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	109,043,050 - 109,090,002 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	109,049,057 - 109,095,949 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	15,280,947 - 15,327,897 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	15,784,740 - 15,831,449 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	15,784,740 - 15,831,449 (-)	Ensembl	panpan1.1		panPan2

PSIP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	35,746,064 - 35,788,473 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	35,747,341 - 35,789,110 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	34,390,775 - 34,437,103 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	36,648,900 - 36,657,415 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	11	35,350,549 - 35,396,865 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	35,141,417 - 35,187,689 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	35,799,567 - 35,846,055 (-)	NCBI		UU_Cfam_GSD_1.0

Psip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	150,438,959 - 150,488,118 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936539	8,892,841 - 8,940,871 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936539	8,894,285 - 8,940,831 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PSIP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	207,173,540 - 207,214,773 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	207,173,264 - 207,216,437 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	230,981,479 - 231,024,777 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PSIP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	64,086,611 - 64,137,298 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	64,087,189 - 64,140,661 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	52,279,543 - 52,330,223 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Psip1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624736	19,618,417 - 19,665,896 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Psip1
69 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	253
Count of miRNA genes:	190
Interacting mature miRNAs:	220
Transcripts:	ENSRNOT00000016130
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	1	131345958	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
7394712	Emca13	Estrogen-induced mammary cancer QTL 13			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	9823266	99753708	Rat
634305	Mamtr1	Mammary tumor resistance QTL 1		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	12789751	113558310	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	31663789	131345958	Rat
1576317	Eutr2	Estrogen induced uterine response QTL 2		0.01	uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	34730116	104251008	Rat
2316959	Gluco59	Glucose level QTL 59	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	34944474	113558310	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	35189153	141643988	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40128307	148607290	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	43726656	129132602	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	46711509	161317411	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	50328551	141643988	Rat
2303574	Gluco42	Glucose level QTL 42	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	53496719	98496719	Rat
61359	Eaex	Experimental allergic encephalomyelitis QTL x	3		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	5	55715622	100715622	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55805606	132207589	Rat
1358895	Bp254	Blood pressure QTL 254	3.6	0.0003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	58829236	128034027	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	59793399	143070159	Rat
2316957	Pur21	Proteinuria QTL 21	6.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	5	59793528	113558156	Rat
61386	Bp49	Blood pressure QTL 49	16.6		cerebrum integrity trait (VT:0010549)	brain infarction volume (CMO:0001013)	5	60293434	98603051	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	60293434	161481680	Rat
2290005	Mcs24	Mammary carcinoma susceptibility QTL 24			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	64719390	109719390	Rat
2306971	Anxrr21	Anxiety related response QTL 21	9.47		fear/anxiety-related behavior trait (VT:1000241)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	5	66174080	124160948	Rat
2312671	Scl64	Serum cholesterol level QTL 64		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	68984307	104251008	Rat
61380	Edpm5	Estrogen-dependent pituitary mass QTL 5	4.5	0.92	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	5	68984307	104251008	Rat
1357396	Bw44	Body weight QTL 44	4.19		body mass (VT:0001259)	body weight (CMO:0000012)	5	68984307	104251008	Rat
1357402	Bw46	Body weight QTL 46	4.47		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	5	68984307	104251008	Rat
2302381	Bw84	Body weight QTL 84	4.47		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	5	68984307	104251008	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	69540295	151018848	Rat
1298070	Scl18	Serum cholesterol level QTL 18	3.7		blood LDL cholesterol amount (VT:0000181)	calculated plasma low density lipoprotein cholesterol level (CMO:0001245)	5	79584860	124584860	Rat
1598846	Bp293	Blood pressure QTL 293	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	79584860	124584860	Rat
1598859	Cm66	Cardiac mass QTL 66	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	79584860	124584860	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	82394392	166664054	Rat
1298086	Bp156	Blood pressure QTL 156			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	84132602	129132602	Rat
7411601	Foco12	Food consumption QTL 12	19.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	87468046	132468046	Rat
7411564	Bw135	Body weight QTL 135		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	87468046	132468046	Rat
7411582	Foco3	Food consumption QTL 3	7.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	87468046	132468046	Rat
6903316	Bw113	Body weight QTL 113	2	0.0103	body mass (VT:0001259)	body weight (CMO:0000012)	5	87765973	132765973	Rat
1358889	Bp261	Blood pressure QTL 261	2.86		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	90067849	128034027	Rat
1358909	Kidm25	Kidney mass QTL 25	1.87		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	90067849	128034027	Rat
631527	Tls1	T-lymphoma susceptibility QTL 1	0	0.001	thymus integrity trait (VT:0010555)	post-insult time to onset of T-cell lymphoma (CMO:0001907)	5	90450144	135450144	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	94858972	143070159	Rat
1331796	Thshl2	Thyroid stimulating hormone level QTL 2	2.3		blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	5	97059760	147465714	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	97570330	136479578	Rat

Markers in Region

AU022012

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	20,419,348 - 20,419,572 (+)	MAPPER	mRatBN7.2
mRatBN7.2	5	97,847,027 - 97,847,249 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	21,813,663 - 21,813,886	NCBI	Rnor6.0
Rnor_6.0	5	101,555,709 - 101,555,930	NCBI	Rnor6.0
Rnor_5.0	20	23,912,313 - 23,912,536	UniSTS	Rnor5.0
Rnor_5.0	5	105,568,322 - 105,568,543	UniSTS	Rnor5.0
RGSC_v3.4	20	21,236,905 - 21,237,128	UniSTS	RGSC3.4
RGSC_v3.4	5	102,304,459 - 102,304,680	UniSTS	RGSC3.4
Celera	5	96,399,471 - 96,399,692	UniSTS
Celera	20	21,783,150 - 21,783,373	UniSTS
Cytogenetic Map	5	q31	UniSTS
Cytogenetic Map	20	p11	UniSTS

RH134944

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	97,868,158 - 97,868,340 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	101,576,837 - 101,577,018	NCBI	Rnor6.0
Rnor_5.0	5	105,589,450 - 105,589,631	UniSTS	Rnor5.0
RGSC_v3.4	5	102,325,587 - 102,325,768	UniSTS	RGSC3.4
Celera	5	96,420,602 - 96,420,783	UniSTS
RH 3.4 Map	11	140.78	UniSTS
Cytogenetic Map	5	q31	UniSTS

RH137948

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	20,419,448 - 20,419,672 (+)	MAPPER	mRatBN7.2
mRatBN7.2	5	97,847,120 - 97,847,349 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	101,555,802 - 101,556,030	NCBI	Rnor6.0
Rnor_5.0	5	105,568,415 - 105,568,643	UniSTS	Rnor5.0
RGSC_v3.4	5	102,304,552 - 102,304,780	UniSTS	RGSC3.4
Celera	5	96,399,564 - 96,399,792	UniSTS
Cytogenetic Map	5	q31	UniSTS

BE118042

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	97,870,730 - 97,870,886 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	101,579,409 - 101,579,564	NCBI	Rnor6.0
Rnor_5.0	5	105,592,022 - 105,592,177	UniSTS	Rnor5.0
RGSC_v3.4	5	102,328,159 - 102,328,314	UniSTS	RGSC3.4
Celera	5	96,423,174 - 96,423,329	UniSTS
RH 3.4 Map	5	745.1	UniSTS
Cytogenetic Map	5	q31	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	35	50	34	19	34	8	8	74	33	41	11	8
Low		8	7	7		7		3		2
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_175765	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238353	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763779	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593365	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593366	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109886	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109887	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109888	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287634	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB285525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF339084	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF372090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC093606	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473978	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000016130 ⟹ ENSRNOP00000016130

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	97,847,015 - 97,878,738 (-)	Ensembl
Rnor_6.0 Ensembl	5	101,555,694 - 101,588,001 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000082239 ⟹ ENSRNOP00000068629

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	97,853,035 - 97,879,257 (-)	Ensembl
Rnor_6.0 Ensembl	5	101,561,716 - 101,588,598 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000094774 ⟹ ENSRNOP00000077371

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	97,849,495 - 97,878,757 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000108041 ⟹ ENSRNOP00000094095

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	97,847,519 - 97,879,257 (-)	Ensembl

RefSeq Acc Id:

NM_175765 ⟹ NP_786941

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	102,893,436 - 102,924,670 (-)	NCBI
mRatBN7.2	5	97,847,517 - 97,878,757 (-)	NCBI
Rnor_6.0	5	101,556,198 - 101,588,098 (-)	NCBI
Rnor_5.0	5	105,568,304 - 105,601,260 (-)	NCBI
RGSC_v3.4	5	102,304,948 - 102,336,608 (-)	RGD
Celera	5	96,399,960 - 96,431,195 (-)	RGD

Sequence:

show sequence

GGGCCCGCCAGTCCCAGCTCGCGTCGGTGCTCGCATCTACTGATCGCGGCTGCGCTGCTCCCCC
TTCTGGTCTTGGGACTCCCGGCGTCGCCCCTCAAACATGACTCGCGATTTCAAACCTGGAGACC
TCATCTTCGCCAAGATGAAAGGTTATCCTCATTGGCCAGCTCGAGTAGATGAAGTTCCTGATGG
AGCTGTAAAACCACCCACAAACAAACTACCCATTTTCTTTTTTGGAACCCACGAGACTGCTTTT
TTAGGACCAAAGGACATATTTCCTTATTCAGAAAATAAGGAAAAGTATGGCAAACCAAATAAAC
GAAAAGGTTTTAATGAAGGATTGTGGGAGATAGATAACAATCCAAAAGTGAAATTTTCAAGTCA
ACAGGTATCAACCAAACAGTCAAATGCATCATCTGATGTTGAAGCGGAAGAAAAAGAAACTAGT
GTTTCAAAGGAAGATACTGATCAGGAAGAAAAAGCCAGCAATGAAGATGTGACTAAAGCAGCTG
ACATAACCACTCCAAAAGCTGCCAGGCGAGGAAGAAAGAGAAAGGCTGAAAAACAAGTAGACAC
TGAAGAGGCAGGAGTGGTGACTGCAGCGACCGCTTCCAATGTGAAAGCAAGTCCTAAGAGAGGA
CGGCCTGCAGCTACTGAAGTCAAGATTCCAAAACCAAGAGGCAGACCTAAAGTGGTAAAACAGC
CCTGTCCGTCAGAAAGTGACATGGTTATTGATGAAGACAAAAGTAAAAAAAAGGGGCCAGAGGA
AAAACCACCCAAAAAGCAGCTTAAAAAGGAGGAAGAAGGCCAAAAGGAAGAAGAGAAGCCAAGA
AAAGAACCAGATAAGAAAGAGGGGAAGAAAGAAGTCGAATCTAAACGGAAAAATTTAGCTAAAC
CAGGGGTTACGTCAACCTCTGATTCAGAAGAAGATGATGATCAAGAAGGTGAAAAGAAGAGAAA
GGGTGGAAGACACTTCCAGGCTGCTCACAGGAGGAACATGCTAAAAGGCCAACATGAGAAAGAA
GCTGCAGATCGGAAACGCAAGCAGGAGGAACAAATGGAGACTGAGCAGCAGACTAAAGATGAAG
GAAAGAAGCCAGAAGTTAAGAAAGTGGAGAAGAAGCGAGAAACATCAATGGATTCTCGACTTCA
AAGGATACATGCTGAAATTAAAAATTCACTCAAAATTGATAATCTAGATGTGAACAGATGCATT
GAGGCACTGGATGAACTCGCTTCACTTCAGGTAACAATGCAACAAGCTCAGAAACACACAGAGA
TGATCACAACCCTGAAGAAAATCCGGCGGTTCAAAGTCAGTCAAGTTATCATGGAGAAGTCTAC
AATGTTGTATAACAAGTTTAAGAATATGTTTTTGGTTGGTGAAGGGGATTCCGTCATCACCCAA
GTGCTAAACAAATCTCTTGCTGAACAAAGACAGCATGAGGAAGCAAATAAAACCAAAGATCAAG
GGAAGAAAGGGCCAAACAAAAAGCTAGAAAAGGAACAAACAGGTACAAAGAGCCTAAATGGAGG
ATCTGATGCTCAGGAAAGTAATCATCCACAACATAATGGTGACAGTGCGGAAGAAAGCAAAGAC
AGCCGTGAGGCCGGCAGTAAGACAAAGACACCTGGAGAAGAGAGAGAGGCTGAAGTATCTCTGA
AGGAGTCTACCCTAGATAACTAGGTCTGCAGACTTCAGATGTAAAGAGTGTGAGAAGTCTGTTG
TGAGTGGCTTCATTTGAAATACTTAGGCTGTTGAAAGGTTTAAAGTTTTATAAGCATAGGTTTT
GATGTTTAAGTAGTTGGGGGATAGAAAAACCCTTTATATTTGTGTAAAAGTCAATTATTGCTAA
TTTTCTGTGTGCAGTATTAACAGCTCCGCCATCTAGTTTGAGTAAGGAAACCTACTTAGAAAGG
TTAACCTGCTTTATAGACATGACTGTAGTGAATTTTTGGTTAGTGTGTCAATGTGTAATTAGTA
GTAGGGCAGTTACATTTTAAAACTGCTACTTGTATAAATCTTTCCTCTTTTCCCAAATACTGTG
CGTTTTGTGCATAGTTTTTACAAATATTGGATTTACCAGACTGTCTTTTCACTGTGTGGGTGTT
TTAGAAGTTGAGCATTTTTATGGATGATAAAATGAATGTTACTTCTAAGTACTCACTCCCTTTT
ATCAACAGTTATAACCTCAGTCCATTGTGCTACATTAGCGTGCCTCTTTGTAATAATGTGTAGT
ATGACAGCTAGATGCCTATTGGGTTGTTATAGAAGGTACAAATTTGTTTACTTTTGAAAGTAAT
TTAGTTTTAGGACTGGGATTTCAGTGGTGTTAGAACTAGAGAGAACAGACTGGTTATATATACA
TATAGGAAGTCCATCTACAATCCTTTATAAAGGTACCAATCACACAAACCTAAAATTAGTTTGT
TTTAATCTTATACTCATTAAGGTGTGTTTTTTTTTCTTTCTTTTTTAATTAGAATCAATCCATG
ATGCTTATAAGTAATAAATAAGGAAATTAACCTAATTGAAGACATGAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006238353 ⟹ XP_006238415

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	102,892,929 - 102,925,191 (-)	NCBI
mRatBN7.2	5	97,847,010 - 97,878,757 (-)	NCBI
Rnor_6.0	5	101,555,909 - 101,588,659 (-)	NCBI
Rnor_5.0	5	105,568,304 - 105,601,260 (-)	NCBI

Sequence:

show sequence

TAGCGGGCGCCGAGCGGGAGCCGCGCGGGAGCGGCGCAGCGACATCGGCGGCAGTGGCGGTGGC
GGTTGCAGCTCGGAGCCGTTGAGACGCCTCTGCGGCAGCTGGTGGCGCAGGTGGCCGGCGTGGA
CGTGGGCAGAAGCGGCCAGCGCGCCCCGCAGCCCCAGCGCCACCGCCCGGCAGGCGCGTCGGGA
CACCCCGAGGCATCCTCCCCCGCCCGCGGGCCCGCCAGTCCCAGCTCGCGTCGGTGCTCGCATC
TACTGATCGCGGCTGCGCTGCTCCCCCTTCTGGTCTTGGGACTCCCGGCGTCGCCCCTCAAACA
TGACTCGCGATTTCAAACCTGGAGACCTCATCTTCGCCAAGATGAAAGGTTATCCTCATTGGCC
AGCTCGAGTAGATGAAGTTCCTGATGGAGCTGTAAAACCACCCACAAACAAACTACCCATTTTC
TTTTTTGGAACCCACGAGACTGCTTTTTTAGGACCAAAGGACATATTTCCTTATTCAGAAAATA
AGGAAAAGTATGGCAAACCAAATAAACGAAAAGGTTTTAATGAAGGATTGTGGGAGATAGATAA
CAATCCAAAAGTGAAATTTTCAAGTCAACAGGTATCAACCAAACAGTCAAATGCATCATCTGAT
GTTGAAGCGGAAGAAAAAGAAACTAGTGTTTCAAAGGAAGATACTGATCAGGAAGAAAAAGCCA
GCAATGAAGATGTGACTAAAGCAGCTGACATAACCACTCCAAAAGCTGCCAGGCGAGGAAGAAA
GAGAAAGGCTGAAAAACAAGTAGACACTGAAGAGGCAGGAGTGGTGACTGCAGCGACCGCTTCC
AATGTGAAAGCAAGTCCTAAGAGAGGACGGCCTGCAGCTACTGAAGTCAAGATTCCAAAACCAA
GAGGCAGACCTAAAGTGGTAAAACAGCCCTGTCCGTCAGAAAGTGACATGGTTATTGATGAAGA
CAAAAGTAAAAAAAAGGGGCCAGAGGAAAAACCACCCAAAAAGCAGCTTAAAAAGGAGGAAGAA
GGCCAAAAGGAAGAAGAGAAGCCAAGAAAAGAACCAGATAAGAAAGAGGGGAAGAAAGAAGTCG
AATCTAAACGGAAAAATTTAGCTAAACCAGGGGTTACGTCAACCTCTGATTCAGAAGAAGATGA
TGATCAAGAAGGTGAAAAGCAGAAGAGAAAGGGTGGAAGAAACTTCCAGGCTGCTCACAGGAGG
AACATGCTAAAAGGCCAACATGAGAAAGAAGCTGCAGATCGGAAACGCAAGCAGGAGGAACAAA
TGGAGACTGAGCAGCAGACTAAAGATGAAGGAAAGAAGCCAGAAGTTAAGAAAGTGGAGAAGAA
GCGAGAAACATCAATGGATTCTCGACTTCAAAGGATACATGCTGAAATTAAAAATTCACTCAAA
ATTGATAATCTAGATGTGAACAGATGCATTGAGGCACTGGATGAACTCGCTTCACTTCAGGTAA
CAATGCAACAAGCTCAGAAACACACAGAGATGATCACAACCCTGAAGAAAATCCGGCGGTTCAA
AGTCAGTCAAGTTATCATGGAGAAGTCTACAATGTTGTATAACAAGTTTAAGAATATGTTTTTG
GTTGGTGAAGGGGATTCCGTCATCACCCAAGTGCTAAACAAATCTCTTGCTGAACAAAGACAGC
ATGAGGAAGCAAATAAAACCAAAGATCAAGGGAAGAAAGGGCCAAACAAAAAGCTAGAAAAGGA
ACAAACAGGTACAAAGAGCCTAAATGGAGGATCTGATGCTCAGGAAAGTAATCATCCACAACAT
AATGGTGACAGTGCGGAAGAAAGCAAAGACAGCCGTGAGGCCGGCAGTAAGACAAAGACACCTG
GAGAAGAGAGAGAGGCTGAAGTATCTCTGAAGGAGTCTACCCTAGATAACTAGGTCTGCAGACT
TCAGATGTAAAGAGTGTGAGAAGTCTGTTGTGAGTGGCTTCATTTGAAATACTTAGGCTGCTGA
AAGGTTTAAAGTTTTATAAGCATAGGTTTTGATGTTTAAGTAGTTGGGGGATAGAAAAACCCTT
TATATTTGTGTAAAAGTCAATTATTGCTAATTTTCTGTGTGCAGTATTAACAGCTCCGCCATCT
AGTTTGAGTAAGGAAACCTACTTAGAAAGGTTAACCTGCTTTATAGACATGACTGTAGTGAATT
TTTGGTTAGTGTGTCAATGTGTAATTAGTAGTAGGGCAGTTACATTTTAAAACTGCTACTTGTA
TAAATCTTTCCTCTTTTCCCAAATACTGTGCGTTTTGTGCATAGTTTTTACAAATATTGGATTT
ACCAGACTGTCTTTTCACTGTGTGGGTGTTTTAGAAGTTGAGCATTTTTATGGATGATAAAATG
AATGTTACTTCTAAGTACTCACTCCCTTTTATCAACAGTTATAACCTCAGTCCATTGTGCTACA
TTAGCGTGCCTCTTTGTAATAATGTGTAGTATGACAGCTAGATGCCTATTGGGTTGTTATAGAA
GGTACAAATTTGTTTACTTTTAAAAGTAATTTAGTTTTAGGACTGGGATTTCAGTGGTGTTAGA
ACTAGAGAGAACAGACTGGTTATATATACATATAGGAAGTCCATCTACAATCCTTTATAAAGGT
ACTAATCACACAAACCTAAAATTAGTTTGTTTTAATCTTATACTCATTAAGGTGTGTTTTTTTT
TCTTTCTTTTTTAATTAGAATCAATCCATGATGCTTATAAGTAATAAATAAGGAAATTAACCTA
ATTGAAGACATGGCCATATTGTAATGGGATTTTTGTTTCTCTATCAAACATAATCAGATGATTA
CAGAAAAAACAAACATCAGTTGTTCCAAGGTAGTAACCAGATAGTCCATATACACAAACATGGA
CTATTGCTCTGTTAAATTAAGGCATAACATTTCAAAGATATTCTGAGTAATCAGGTCAGTTGTT
GGTCTCTGGTAGGTAGAAAAGTTTATCCTTATGCTTTGAAATTTTGTAGGAAGGTGACTTAATA
CCAGTGTTTCTGTGCGATACGATTAAATATGTTCTTGATTTCTCA

hide sequence

RefSeq Acc Id:

XM_008763779 ⟹ XP_008762001

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	102,898,944 - 102,925,191 (-)	NCBI
mRatBN7.2	5	97,853,025 - 97,879,280 (-)	NCBI
Rnor_6.0	5	101,561,706 - 101,588,657 (-)	NCBI

Sequence:

show sequence

GCGGGCGCCGAGCGGGAGCCGCGCGGGAGCGGCGCAGCGACATCGGCGGCAGTGGCGGTGGCGG
TTGCAGCTCGGAGCCGTTGAGACGCCTCTGCGGCAGCTGGTGGCGCAGGTGGCCGGCGTGGACG
TGGGCAGAAGCGGCCAGCGCGCCCCGCAGCCCCAGCGCCACCGCCCGGCAGGCGCGTCGGGACA
CCCCGAGGCATCCTCCCCCGCCCGCGGGCCCGCCAGTCCCAGCTCGCGTCGGTGCTCGCATCTA
CTGATCGCGGCTGCGCTGCTCCCCCTTCTGGTCTTGGGACTCCCGGCGTCGCCCCTCAAACATG
ACTCGCGATTTCAAACCTGGAGACCTCATCTTCGCCAAGATGAAAGGTTATCCTCATTGGCCAG
CTCGAGTAGATGAAGTTCCTGATGGAGCTGTAAAACCACCCACAAACAAACTACCCATTTTCTT
TTTTGGAACCCACGAGACTGCTTTTTTAGGACCAAAGGACATATTTCCTTATTCAGAAAATAAG
GAAAAGTATGGCAAACCAAATAAACGAAAAGGTTTTAATGAAGGATTGTGGGAGATAGATAACA
ATCCAAAAGTGAAATTTTCAAGTCAACAGGTATCAACCAAACAGTCAAATGCATCATCTGATGT
TGAAGCGGAAGAAAAAGAAACTAGTGTTTCAAAGGAAGATACTGATCAGGAAGAAAAAGCCAGC
AATGAAGATGTGACTAAAGCAGCTGACATAACCACTCCAAAAGCTGCCAGGCGAGGAAGAAAGA
GAAAGGCTGAAAAACAAGTAGACACTGAAGAGGCAGGAGTGGTGACTGCAGCGACCGCTTCCAA
TGTGAAAGCAAGTCCTAAGAGAGGACGGCCTGCAGCTACTGAAGTCAAGATTCCAAAACCAAGA
GGCAGACCTAAAGTGGTAAAACAGCCCTGTCCGTCAGAAAGTGACATGGTTATTGATGAAGACA
AAAGTAAAAAAAAGGGGCCAGAGGAAAAACCACCCAAAAAGCAGCTTAAAAAGGAGGAAGAAGG
CCAAAAGGAAGAAGAGAAGCCAAGAAAAGAACCAGATAAGAAAGAGGGGAAGAAAGAAGTCGAA
TCTAAACGGAAAAATTTAGCTAAACCAGGGGTTACGTCAACCTCTGATTCAGAAGAAGATGATG
ATCAAGAAGGTGAAAAGAAGAGAAAGGGTGGAAGAAACTTCCAGGCTGCTCACAGGAGGAACAT
GCTAAAAGGCCAACATGAGAAAGAAGCTGCAGATCGGAAACGCAAGCAGGAGGAACAAATGGAG
ACTGAGCACCAAACAACATGTAATCTACAGTAATAAAAATATATCTCATTTTGGGCTCAAAGCA
TTAATCCAGTAACTGAAAAGAGAATACGAGTGGAGCATACAAGCGATGAAGATCTTGAGACAGA
CTCATTGGACTGAATTTTCCCCTCCCCCCTTGATGGAAGAAATGTTCCAGATTCTAAATTGAGG
ACTTCACTATTAATGGCATTATTAACTGTGTTATGATTGTTAACAAAATATCCTGTAAGGTACA
CACTACATATTAAGGTTGGCCATCATTCCTGTTTTTTTTTTTAGCCAAGCTTAAAATGAAGCTT
TGTGTTTGAAGTTATAACAAACATAGATGAAGTCGGTGGTTGTACATTATTTCATTTAGAAAAT
ATGAAAACTCATTTTGTTTTGAAGATAGGTATTAAACTGAAATAGCTATTACGTTCTTGAAAAA
TGGGGCAGGTGTGCCCTTCCCTTGACATTCTTTTGTTGTTAAGTTCTTTAGAGTCTTGTTTTTT
TTTTTCTTTTTAATCCTGAGAGATTAAACAGTAGACTTGTTAAGTAAAAATATGAAACTGTAAC
CAAAATTTTAAAATAAAGTTTTTTTTAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017593365 ⟹ XP_017448854

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	102,898,944 - 102,925,191 (-)	NCBI
mRatBN7.2	5	97,853,025 - 97,878,757 (-)	NCBI
Rnor_6.0	5	101,561,706 - 101,588,658 (-)	NCBI

Sequence:

show sequence

AGCGGGCGCCGAGCGGGAGCCGCGCGGGAGCGGCGCAGCGACATCGGCGGCAGTGGCGGTGGCG
GTTGCAGCTCGGAGCCGTTGAGACGCCTCTGCGGCAGCTGGTGGCGCAGGTGGCCGGCGTGGAC
GTGGGCAGAAGCGGCCAGCGCGCCCCGCAGCCCCAGCGCCACCGCCCGGCAGGCGCGTCGGGAC
ACCCCGAGGCATCCTCCCCCGCCCGCGGGCCCGCCAGTCCCAGCTCGCGTCGGTGCTCGCATCT
ACTGATCGCGGCTGCGCTGCTCCCCCTTCTGGTCTTGGGACTCCCGGCGTCGCCCCTCAAACAT
GACTCGCGATTTCAAACCTGGAGACCTCATCTTCGCCAAGATGAAAGGTTATCCTCATTGGCCA
GCTCGAGTAGATGAAGTTCCTGATGGAGCTGTAAAACCACCCACAAACAAACTACCCATTTTCT
TTTTTGGAACCCACGAGACTGCTTTTTTAGGACCAAAGGACATATTTCCTTATTCAGAAAATAA
GGAAAAGTATGGCAAACCAAATAAACGAAAAGGTTTTAATGAAGGATTGTGGGAGATAGATAAC
AATCCAAAAGTGAAATTTTCAAGTCAACAGGTATCAACCAAACAGTCAAATGCATCATCTGATG
TTGAAGCGGAAGAAAAAGAAACTAGTGTTTCAAAGGAAGATACTGATCAGGAAGAAAAAGCCAG
CAATGAAGATGTGACTAAAGCAGCTGACATAACCACTCCAAAAGCTGCCAGGCGAGGAAGAAAG
AGAAAGGCTGAAAAACAAGTAGACACTGAAGAGGCAGGAGTGGTGACTGCAGCGACCGCTTCCA
ATGTGAAAGCAAGTCCTAAGAGAGGACGGCCTGCAGCTACTGAAGTCAAGATTCCAAAACCAAG
AGGCAGACCTAAAGTGGTAAAACAGCCCTGTCCGTCAGAAAGTGACATGGTTATTGATGAAGAC
AAAAGTAAAAAAAAGGGGCCAGAGGAAAAACCACCCAAAAAGCAGCTTAAAAAGGAGGAAGAAG
GCCAAAAGGAAGAAGAGAAGCCAAGAAAAGAACCAGATAAGAAAGAGGGGAAGAAAGAAGTCGA
ATCTAAACGGAAAAATTTAGCTAAACCAGGGGTTACGTCAACCTCTGATTCAGAAGAAGATGAT
GATCAAGAAGGTGAAAAGAAGAGAAAGGGTGGAAGAAACTTCCAGGCTGCTCACAGGAGGAACA
TGCTAAAAGGCCAACATGAGAAAGAAGCTGCAGATCGGAAACGCAAGCAGGAGGAACAAATGGA
GACTGAGCACATTAATCCAGTAACTGAAAAGAGAATACGAGTGGAGCATACAAGCGATGAAGAT
CTTGAGACAGACTCATTGGACTGAATTTTCCCCTCCCCCCTTGATGGAAGAAATGTTCCAGATT
CTAAATTGAGGACTTCACTATTAATGGCATTATTAACTGTGTTATGATTGTTAACAAAATATCC
TGTAAGGTACACACTACATATTAAGGTTGGCCATCATTCCTGTTTTTTTTTTTAGCCAAGCTTA
AAATGAAGCTTTGTGTTTGAAGTTATAACAAACATAGATGAAGTCGGTGGTTGTACATTATTTC
ATTTAGAAAATATGAAAACTCATTTTGTTTTGAAGATAGGTATTAAACTGAAATAGCTATTACG
TTCTTGAAAAATGGGGCAGGTGTGCCCTTCCCTTGACATTCTTTTGTTGTTAAGTTCTTTAGAG
TCTTGTTTTTTTTTTTCTTTTTAATCCTGAGAGATTAAACAGTAGACTTGTTAAGTAAAAATAT
GAAACTGTAACCAAAATTTTAAAATAAAGTTTTTTTTAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017593366 ⟹ XP_017448855

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	102,898,944 - 102,925,191 (-)	NCBI
mRatBN7.2	5	97,853,025 - 97,878,757 (-)	NCBI
Rnor_6.0	5	101,561,706 - 101,588,657 (-)	NCBI

Sequence:

show sequence

GCGGGCGCCGAGCGGGAGCCGCGCGGGAGCGGCGCAGCGACATCGGCGGCAGTGGCGGTGGCGG
TTGCAGCTCGGAGCCGTTGAGACGCCTCTGCGGCAGCTGGTGGCGCAGGTGGCCGGCGTGGACG
TGGGCAGAAGCGGCCAGCGCGCCCCGCAGCCCCAGCGCCACCGCCCGGCAGGCGCGTCGGGACA
CCCCGAGGCATCCTCCCCCGCCCGCGGGCCCGCCAGTCCCAGCTCGCGTCGGTGCTCGCATCTA
CTGATCGCGGCTGCGCTGCTCCCCCTTCTGGTCTTGGGACTCCCGGCGTCGCCCCTCAAACATG
ACTCGCGATTTCAAACCTGGAGACCTCATCTTCGCCAAGATGAAAGGTTATCCTCATTGGCCAG
CTCGAGTAGATGAAGTTCCTGATGGAGCTGTAAAACCACCCACAAACAAACTACCCATTTTCTT
TTTTGGAACCCACGAGACTGCTTTTTTAGGACCAAAGGACATATTTCCTTATTCAGAAAATAAG
GAAAAGTATGGCAAACCAAATAAACGAAAAGGTTTTAATGAAGGATTGTGGGAGATAGATAACA
ATCCAAAAGTGAAATTTTCAAGTCAACAGGTATCAACCAAACAGTCAAATGCATCATCTGATGT
TGAAGCGGAAGAAAAAGAAACTAGTGTTTCAAAGGAAGATACTGATCAGGAAGAAAAAGCCAGC
AATGAAGATGTGACTAAAGCAGCTGACATAACCACTCCAAAAGCTGCCAGGCGAGGAAGAAAGA
GAAAGGCTGAAAAACAAGTAGACACTGAAGAGGCAGGAGTGGTGACTGCAGCGACCGCTTCCAA
TGTGAAAGCAAGTCCTAAGAGAGGACGGCCTGCAGCTACTGAAGTCAAGATTCCAAAACCAAGA
GGCAGACCTAAAGTGGTAAAACAGCCCTGTCCGTCAGAAAGTGACATGGTTATTGATGAAGACA
AAAGTAAAAAAAAGGGGCCAGAGGAAAAACCACCCAAAAAGCAGCTTAAAAAGGAGGAAGAAGG
CCAAAAGGAAGAAGAGAAGCCAAGAAAAGAACCAGATAAGAAAGAGGGGAAGAAAGAAGTCGAA
TCTAAACGGAAAAATTTAGCTAAACCAGGGGTTACGTCAACCTCTGATTCAGAAGAAGATGATG
ATCAAGAAGGTGAAAAGAAGAGAAAGGGTGGAAGAAACTTCCAGGCTGCTCACAGGAGGAACAT
GCTAAAAGGCCAACATGAGAAAGAAGCTGCAGATCGGAAACGCAAGCAGGAGGAACAAATGGAG
ACTGAGCATTTTGCTCTGTAAAGCATTTCAGATGCAACTTGTGTGAAATGCATTATGCAAAATA
AAGTTTATTGTATTGTATTCCCAGCCAAACAACATGTAATCTACAGTAATAAAAATATATCTCA
TTTTGGGCTCAAAGCATTAATCCAGTAACTGAAAAGAGAATACGAGTGGAGCATACAAGCGATG
AAGATCTTGAGACAGACTCATTGGACTGAATTTTCCCCTCCCCCCTTGATGGAAGAAATGTTCC
AGATTCTAAATTGAGGACTTCACTATTAATGGCATTATTAACTGTGTTATGATTGTTAACAAAA
TATCCTGTAAGGTACACACTACATATTAAGGTTGGCCATCATTCCTGTTTTTTTTTTTAGCCAA
GCTTAAAATGAAGCTTTGTGTTTGAAGTTATAACAAACATAGATGAAGTCGGTGGTTGTACATT
ATTTCATTTAGAAAATATGAAAACTCATTTTGTTTTGAAGATAGGTATTAAACTGAAATAGCTA
TTACGTTCTTGAAAAATGGGGCAGGTGTGCCCTTCCCTTGACATTCTTTTGTTGTTAAGTTCTT
TAGAGTCTTGTTTTTTTTTTTCTTTTTAATCCTGAGAGATTAAACAGTAGACTTGTTAAGTAAA
AATATGAAACTGTAACCAAAATTTTAAAATAAAGTTTTTTTTAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039109886 ⟹ XP_038965814

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	102,898,944 - 102,925,191 (-)	NCBI
mRatBN7.2	5	97,853,025 - 97,878,757 (-)	NCBI

RefSeq Acc Id:

XM_039109887 ⟹ XP_038965815

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	102,898,944 - 102,925,191 (-)	NCBI
mRatBN7.2	5	97,853,025 - 97,878,757 (-)	NCBI

RefSeq Acc Id:

XM_039109888 ⟹ XP_038965816

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	102,898,944 - 102,925,191 (-)	NCBI
mRatBN7.2	5	97,853,025 - 97,878,757 (-)	NCBI

RefSeq Acc Id:

XM_063287634 ⟹ XP_063143704

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	102,892,929 - 102,925,191 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_786941	(Get FASTA)	NCBI Sequence Viewer
	XP_006238415	(Get FASTA)	NCBI Sequence Viewer
	XP_008762001	(Get FASTA)	NCBI Sequence Viewer
	XP_017448854	(Get FASTA)	NCBI Sequence Viewer
	XP_017448855	(Get FASTA)	NCBI Sequence Viewer
	XP_038965814	(Get FASTA)	NCBI Sequence Viewer
	XP_038965815	(Get FASTA)	NCBI Sequence Viewer
	XP_038965816	(Get FASTA)	NCBI Sequence Viewer
	XP_063143704	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH93606	(Get FASTA)	NCBI Sequence Viewer
	AAO32951	(Get FASTA)	NCBI Sequence Viewer
	AAP97282	(Get FASTA)	NCBI Sequence Viewer
	BAJ78791	(Get FASTA)	NCBI Sequence Viewer
	EDM10458	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000016130
	ENSRNOP00000016130.2
	ENSRNOP00000068629
	ENSRNOP00000068629.2
	ENSRNOP00000077371
	ENSRNOP00000077371.1
	ENSRNOP00000094095
	ENSRNOP00000094095.1
GenBank Protein	Q812D1	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_786941 ⟸ NM_175765

- UniProtKB:

Q7TNY0 (UniProtKB/Swiss-Prot), Q812D1 (UniProtKB/Swiss-Prot), F1SW39 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTRDFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFPYSEN
KEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQVSTKQSNASSDVEAEEKETSVSKEDTDQEEKA
SNEDVTKAADITTPKAARRGRKRKAEKQVDTEEAGVVTAATASNVKASPKRGRPAATEVKIPKP
RGRPKVVKQPCPSESDMVIDEDKSKKKGPEEKPPKKQLKKEEEGQKEEEKPRKEPDKKEGKKEV
ESKRKNLAKPGVTSTSDSEEDDDQEGEKKRKGGRHFQAAHRRNMLKGQHEKEAADRKRKQEEQM
ETEQQTKDEGKKPEVKKVEKKRETSMDSRLQRIHAEIKNSLKIDNLDVNRCIEALDELASLQVT
MQQAQKHTEMITTLKKIRRFKVSQVIMEKSTMLYNKFKNMFLVGEGDSVITQVLNKSLAEQRQH
EEANKTKDQGKKGPNKKLEKEQTGTKSLNGGSDAQESNHPQHNGDSAEESKDSREAGSKTKTPG
EEREAEVSLKESTLDN

hide sequence

RefSeq Acc Id:	XP_006238415 ⟸ XM_006238353
- Peptide Label:	isoform X1
- UniProtKB:	F7FJ14 (UniProtKB/TrEMBL), F1SW39 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTRDFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFPYSEN KEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQVSTKQSNASSDVEAEEKETSVSKEDTDQEEKA SNEDVTKAADITTPKAARRGRKRKAEKQVDTEEAGVVTAATASNVKASPKRGRPAATEVKIPKP RGRPKVVKQPCPSESDMVIDEDKSKKKGPEEKPPKKQLKKEEEGQKEEEKPRKEPDKKEGKKEV ESKRKNLAKPGVTSTSDSEEDDDQEGEKQKRKGGRNFQAAHRRNMLKGQHEKEAADRKRKQEEQ METEQQTKDEGKKPEVKKVEKKRETSMDSRLQRIHAEIKNSLKIDNLDVNRCIEALDELASLQV TMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTMLYNKFKNMFLVGEGDSVITQVLNKSLAEQRQ HEEANKTKDQGKKGPNKKLEKEQTGTKSLNGGSDAQESNHPQHNGDSAEESKDSREAGSKTKTP GEEREAEVSLKESTLDN hide sequence

RefSeq Acc Id:	XP_008762001 ⟸ XM_008763779
- Peptide Label:	isoform X6
- UniProtKB:	Q566D6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTRDFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFPYSEN KEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQVSTKQSNASSDVEAEEKETSVSKEDTDQEEKA SNEDVTKAADITTPKAARRGRKRKAEKQVDTEEAGVVTAATASNVKASPKRGRPAATEVKIPKP RGRPKVVKQPCPSESDMVIDEDKSKKKGPEEKPPKKQLKKEEEGQKEEEKPRKEPDKKEGKKEV ESKRKNLAKPGVTSTSDSEEDDDQEGEKKRKGGRNFQAAHRRNMLKGQHEKEAADRKRKQEEQM ETEHQTTCNLQ hide sequence

RefSeq Acc Id:

XP_017448854 ⟸ XM_017593365

- Peptide Label:

isoform X4

- Sequence:

show sequence

MTRDFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFPYSEN
KEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQVSTKQSNASSDVEAEEKETSVSKEDTDQEEKA
SNEDVTKAADITTPKAARRGRKRKAEKQVDTEEAGVVTAATASNVKASPKRGRPAATEVKIPKP
RGRPKVVKQPCPSESDMVIDEDKSKKKGPEEKPPKKQLKKEEEGQKEEEKPRKEPDKKEGKKEV
ESKRKNLAKPGVTSTSDSEEDDDQEGEKKRKGGRNFQAAHRRNMLKGQHEKEAADRKRKQEEQM
ETEHINPVTEKRIRVEHTSDEDLETDSLD

hide sequence

RefSeq Acc Id:	XP_017448855 ⟸ XM_017593366
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I6AK62 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTRDFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFPYSEN KEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQVSTKQSNASSDVEAEEKETSVSKEDTDQEEKA SNEDVTKAADITTPKAARRGRKRKAEKQVDTEEAGVVTAATASNVKASPKRGRPAATEVKIPKP RGRPKVVKQPCPSESDMVIDEDKSKKKGPEEKPPKKQLKKEEEGQKEEEKPRKEPDKKEGKKEV ESKRKNLAKPGVTSTSDSEEDDDQEGEKKRKGGRNFQAAHRRNMLKGQHEKEAADRKRKQEEQM ETEHFAL hide sequence

RefSeq Acc Id:

ENSRNOP00000016130 ⟸ ENSRNOT00000016130

RefSeq Acc Id:

ENSRNOP00000068629 ⟸ ENSRNOT00000082239

RefSeq Acc Id:	XP_038965814 ⟸ XM_039109886
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038965815 ⟸ XM_039109887
- Peptide Label:	isoform X5
- UniProtKB:	A0A0G2JTA2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038965816 ⟸ XM_039109888
- Peptide Label:	isoform X7

RefSeq Acc Id:

ENSRNOP00000094095 ⟸ ENSRNOT00000108041

RefSeq Acc Id:

ENSRNOP00000077371 ⟸ ENSRNOT00000094774

RefSeq Acc Id:	XP_063143704 ⟸ XM_063287634
- Peptide Label:	isoform X2

Protein Domains

PWWP

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q812D1-F1-model_v2	AlphaFold	Q812D1	1-528	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693823

Promoter ID:

EPDNEW_R4344

Type:

initiation region

Name:

Psip1_1

Description:

PC4 and SFRS1 interacting protein 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	101,588,622 - 101,588,682	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:631439	AgrOrtholog
BioCyc Gene	G2FUF-40874	BioCyc
Ensembl Genes	ENSRNOG00000011498	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000016130.4	UniProtKB/TrEMBL
	ENSRNOT00000082239.2	UniProtKB/TrEMBL
	ENSRNOT00000094774	ENTREZGENE
	ENSRNOT00000094774.1	UniProtKB/TrEMBL
	ENSRNOT00000108041.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.930.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	2.30.30.140	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7317952	IMAGE-MGC_LOAD
InterPro	HIVI-bd_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	LEDGF_IBD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PWWP_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TFIIS/LEDGF_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:313323	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:105284	IMAGE-MGC_LOAD
NCBI Gene	313323	ENTREZGENE
PANTHER	HEPATOMA-DERIVED GROWTH FACTOR-RELATED	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PC4 AND SFRS1-INTERACTING PROTEIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	LEDGF	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PWWP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Psip1	PhenoGen
PRINTS	TREACLE	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	PWWP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000011498	RatGTEx
SMART	PWWP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF140576	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Tudor/PWWP/MBT	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2JTA2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5Y7G7_RAT	UniProtKB/TrEMBL
	A0A8I6AK62	ENTREZGENE, UniProtKB/TrEMBL
	F1SW39	ENTREZGENE, UniProtKB/TrEMBL
	F7FJ14	ENTREZGENE, UniProtKB/TrEMBL
	PSIP1_RAT	UniProtKB/Swiss-Prot
	Q566D6	ENTREZGENE, UniProtKB/TrEMBL
	Q7TNY0	ENTREZGENE
	Q812D1	ENTREZGENE
UniProt Secondary	Q7TNY0	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-10-13	Psip1	PC4 and SRSF1 interacting protein 1	Psip1	PC4 and SFRS1 interacting protein 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Psip1	PC4 and SFRS1 interacting protein 1	Psip2	PC4 and SFRS1 interacting protein 2	Symbol and Name updated	1299863	APPROVED
2004-02-11	Psip2	PC4 and SFRS1 interacting protein 2	Ledgf	lens epithelium-derived growth factor	Symbol and Name updated to reflect Human and Mouse nomenclature	625702	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed in the ocular tissues, lens, cornea, iris, ciliary body, and retina	724425

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD