Fev (FEV transcription factor, ETS family member) - Rat Genome Database

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Gene: Fev (FEV transcription factor, ETS family member) Rattus norvegicus
Analyze
Symbol: Fev
Name: FEV transcription factor, ETS family member
RGD ID: 628860
Description: Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Predicted to be located in nuclear speck. Predicted to be active in nucleus. Orthologous to human FEV (FEV transcription factor, ETS family member); INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; acrylamide; alpha-hexachlorocyclohexane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ETS domain transcription factor Pet-1; FEV (ETS oncogene family); FEV, ETS transcription factor; PC12 ETS domain-containing transcription factor 1; PC12 ETS factor 1; pet-1; Pet1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8983,887,844 - 83,891,718 (-)NCBIGRCr8
mRatBN7.2976,439,164 - 76,443,603 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl976,439,172 - 76,443,065 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx984,884,303 - 84,888,174 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0990,013,255 - 90,017,126 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0988,399,404 - 88,403,275 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0982,142,981 - 82,146,855 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl982,142,981 - 82,146,874 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0981,911,561 - 81,915,435 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4974,214,764 - 74,218,638 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1974,361,745 - 74,365,639 (-)NCBI
Celera974,010,770 - 74,014,644 (-)NCBICelera
Cytogenetic Map9q33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nuclear speck  (IEA,ISO)
nucleus  (IBA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Pet-1, a novel ETS domain factor that can activate neuronal nAchR gene transcription. Fyodorov D, etal., J Neurobiol 1998 Feb 5;34(2):151-63.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11875656   PMID:19168037   PMID:20818386  


Genomics

Comparative Map Data
Fev
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8983,887,844 - 83,891,718 (-)NCBIGRCr8
mRatBN7.2976,439,164 - 76,443,603 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl976,439,172 - 76,443,065 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx984,884,303 - 84,888,174 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0990,013,255 - 90,017,126 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0988,399,404 - 88,403,275 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0982,142,981 - 82,146,855 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl982,142,981 - 82,146,874 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0981,911,561 - 81,915,435 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4974,214,764 - 74,218,638 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1974,361,745 - 74,365,639 (-)NCBI
Celera974,010,770 - 74,014,644 (-)NCBICelera
Cytogenetic Map9q33NCBI
FEV
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382218,981,087 - 218,985,184 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2218,981,087 - 218,985,184 (-)EnsemblGRCh38hg38GRCh38
GRCh372219,845,809 - 219,849,906 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362219,554,053 - 219,558,623 (-)NCBINCBI36Build 36hg18NCBI36
Build 342219,671,313 - 219,675,884NCBI
Celera2213,615,522 - 213,620,092 (-)NCBICelera
Cytogenetic Map2q35NCBI
HuRef2211,699,837 - 211,704,406 (-)NCBIHuRef
CHM1_12219,853,266 - 219,857,836 (-)NCBICHM1_1
T2T-CHM13v2.02219,469,462 - 219,473,559 (-)NCBIT2T-CHM13v2.0
Fev
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39174,920,660 - 74,924,632 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl174,920,668 - 74,924,578 (-)EnsemblGRCm39 Ensembl
GRCm38174,881,501 - 74,885,473 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl174,881,509 - 74,885,419 (-)EnsemblGRCm38mm10GRCm38
MGSCv37174,928,083 - 74,931,982 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36174,814,716 - 74,818,626 (-)NCBIMGSCv36mm8
Celera175,436,582 - 75,440,470 (-)NCBICelera
Cytogenetic Map1C4NCBI
Fev
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545314,449,352 - 14,452,663 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545314,449,352 - 14,453,145 (+)NCBIChiLan1.0ChiLan1.0
FEV
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213121,611,786 - 121,616,374 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B121,626,750 - 121,631,339 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B106,238,933 - 106,243,499 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B224,832,403 - 224,838,813 (-)NCBIpanpan1.1PanPan1.1panPan2
FEV
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13725,548,578 - 25,552,092 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3726,367,854 - 26,372,353 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03725,563,091 - 25,567,596 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3725,563,099 - 25,568,000 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13725,467,675 - 25,472,180 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03725,402,725 - 25,407,296 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03725,423,527 - 25,428,026 (-)NCBIUU_Cfam_GSD_1.0
Fev
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303175,059,167 - 175,062,546 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365691,402,513 - 1,406,067 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365691,402,513 - 1,408,699 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FEV
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15121,004,665 - 121,009,014 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115121,005,279 - 121,008,748 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
FEV
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110104,879,790 - 104,886,722 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10104,880,347 - 104,883,916 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604094,509,000 - 94,513,765 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fev
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248236,032,352 - 6,036,211 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248236,032,188 - 6,036,211 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fev
18 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:79
Count of miRNA genes:62
Interacting mature miRNAs:68
Transcripts:ENSRNOT00000024190
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93253550577535505Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)93696235977814038Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
6903941Pur31Proteinuria QTL 310.036urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94019418885194188Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94019418885194188Rat
61352Bp34Blood pressure QTL 345arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94249534379271511Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94279151387976209Rat
11353951Bp394Blood pressure QTL 394arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94464992189649921Rat
12879506Pur33Proteinuria QTL 33urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)94464992189649921Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95584784177026453Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)95662771378595166Rat
2303180Bp333Blood pressure QTL 3330.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)95662771378595166Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96207227596470995Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)96207227596470995Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)975712843111552878Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hepatobiliary system nervous system renal system reproductive system respiratory system
High
Medium
Low 2 8 24 12 15
Below cutoff 1 6 37 29 29 8 2 6 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000024190   ⟹   ENSRNOP00000024190
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl976,439,172 - 76,443,065 (-)Ensembl
Rnor_6.0 Ensembl982,142,981 - 82,146,874 (-)Ensembl
RefSeq Acc Id: NM_144753   ⟹   NP_653354
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8983,887,844 - 83,891,718 (-)NCBI
mRatBN7.2976,439,172 - 76,443,046 (-)NCBI
Rnor_6.0982,142,981 - 82,146,855 (-)NCBI
Rnor_5.0981,911,561 - 81,915,435 (-)NCBI
RGSC_v3.4974,214,764 - 74,218,638 (-)RGD
Celera974,010,770 - 74,014,644 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_653354 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL75373 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000024190
  ENSRNOP00000024190.5
  ENSRNOP00055013995
  ENSRNOP00060009102
  ENSRNOP00065010185
GenBank Protein O70132 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_653354   ⟸   NM_144753
- UniProtKB: O70132 (UniProtKB/Swiss-Prot),   A6JVW5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000024190   ⟸   ENSRNOT00000024190
Protein Domains
ETS

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O70132-F1-model_v2 AlphaFold O70132 1-237 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:628860 AgrOrtholog
BioCyc Gene G2FUF-27112 BioCyc
Ensembl Genes ENSRNOG00000017856 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055010295 UniProtKB/Swiss-Prot
  ENSRNOG00060007339 UniProtKB/Swiss-Prot
  ENSRNOG00065008658 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000024190 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000024190.6 UniProtKB/Swiss-Prot
  ENSRNOT00055017397 UniProtKB/Swiss-Prot
  ENSRNOT00060012072 UniProtKB/Swiss-Prot
  ENSRNOT00065013736 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ets_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ETS_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:246271 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 246271 ENTREZGENE
PANTHER PROTEIN FEV UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11849 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ets UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Fev PhenoGen
PRINTS ETSDOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ETS_DOMAIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ETS_DOMAIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ETS_DOMAIN_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000017856 RatGTEx
  ENSRNOG00055010295 RatGTEx
  ENSRNOG00060007339 RatGTEx
  ENSRNOG00065008658 RatGTEx
SMART ETS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0H2UHP3_RAT UniProtKB/TrEMBL
  A6JVW5 ENTREZGENE, UniProtKB/TrEMBL
  FEV_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-10 Fev  FEV transcription factor, ETS family member  Fev  FEV, ETS transcription factor  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-03-01 Fev  FEV, ETS transcription factor  Fev  FEV (ETS oncogene family)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Fev  FEV (ETS oncogene family)  Pet1  ETS domain transcription factor Pet-1  Symbol and Name updated 1299863 APPROVED
2003-02-27 Pet1  ETS domain transcription factor Pet-1      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_domains contains an ETS DNA-binding domain 633697
gene_expression enriched in adrenal gland; present in brain, intestine, and eye 633697
gene_protein 340 amino acids; 35.4 kD 633697