Zbtb14 (zinc finger and BTB domain containing 14) - Rat Genome Database

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Gene: Zbtb14 (zinc finger and BTB domain containing 14) Rattus norvegicus
Analyze
Symbol: Zbtb14 (Ensembl: Zfp161)
Name: zinc finger and BTB domain containing 14 (Ensembl:zinc finger protein 161)
RGD ID: 628712
Description: Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within heart development and kidney development. Predicted to be located in aggresome; cytosol; and nucleolus. Predicted to be active in nucleoplasm. Orthologous to human ZBTB14 (zinc finger and BTB domain containing 14); INTERACTS WITH ammonium chloride; bisphenol A; gentamycin.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Zf5; Zfp161; zinc finger and BTB domain-containing protein 14; zinc finger protein 161; zinc finger protein 161 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89116,780,100 - 116,785,306 (+)NCBIGRCr8
mRatBN7.29109,333,440 - 109,338,646 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9109,331,028 - 109,338,632 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9117,721,347 - 117,726,535 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09122,847,609 - 122,852,815 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09121,187,236 - 121,192,424 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.09117,739,067 - 117,744,273 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9117,737,611 - 117,744,300 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09117,205,246 - 117,206,593 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49108,512,808 - 108,514,157 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.19108,722,289 - 108,723,637 (+)NCBI
Celera9106,479,395 - 106,484,601 (+)NCBICelera
Cytogenetic Map9q38NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Cloning and characterization of zinc finger protein 161 in Rattus norvegicus. Lee KH and Lee YS, DNA Seq 2004 Aug;15(4):310-3.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Proteomics profiling of nuclear proteins for kidney fibroblasts suggests hypoxia, meiosis, and cancer may meet in the nucleus. Shakib K, etal., Proteomics. 2005 Jul;5(11):2819-38.
8. The human gene ZFP161 on 18p11.21-pter encodes a putative c-myc repressor and is homologous to murine Zfp161 (Chr 17) and Zfp161-rs1 (X Chr) Sobek-Klocke I, etal., Genomics 1997 Jul 15;43(2):156-64.
Additional References at PubMed
PMID:8367294   PMID:15629158   PMID:17714511   PMID:25807483  


Genomics

Comparative Map Data
Zbtb14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89116,780,100 - 116,785,306 (+)NCBIGRCr8
mRatBN7.29109,333,440 - 109,338,646 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9109,331,028 - 109,338,632 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9117,721,347 - 117,726,535 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09122,847,609 - 122,852,815 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09121,187,236 - 121,192,424 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.09117,739,067 - 117,744,273 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9117,737,611 - 117,744,300 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09117,205,246 - 117,206,593 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49108,512,808 - 108,514,157 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.19108,722,289 - 108,723,637 (+)NCBI
Celera9106,479,395 - 106,484,601 (+)NCBICelera
Cytogenetic Map9q38NCBI
ZBTB14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38185,289,022 - 5,297,053 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl185,289,019 - 5,297,053 (-)EnsemblGRCh38hg38GRCh38
GRCh37185,289,021 - 5,297,052 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36185,279,379 - 5,283,313 (-)NCBINCBI36Build 36hg18NCBI36
Build 34185,279,378 - 5,283,313NCBI
Celera185,173,448 - 5,180,808 (-)NCBICelera
Cytogenetic Map18p11.31NCBI
HuRef185,254,774 - 5,262,912 (-)NCBIHuRef
CHM1_1185,288,930 - 5,296,891 (-)NCBICHM1_1
T2T-CHM13v2.0185,451,292 - 5,459,322 (-)NCBIT2T-CHM13v2.0
Zbtb14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391769,690,170 - 69,697,747 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1769,690,045 - 69,698,194 (+)EnsemblGRCm39 Ensembl
GRCm381769,383,175 - 69,390,752 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1769,383,050 - 69,391,199 (+)EnsemblGRCm38mm10GRCm38
MGSCv371769,733,318 - 69,739,884 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361769,288,880 - 69,295,446 (+)NCBIMGSCv36mm8
Celera1773,673,040 - 73,679,603 (+)NCBICelera
Cytogenetic Map17E1.3NCBI
cM Map1740.42NCBI
Zbtb14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554025,750,877 - 5,757,370 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554025,750,877 - 5,757,370 (+)NCBIChiLan1.0ChiLan1.0
ZBTB14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21733,153,728 - 33,160,711 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11818,846,321 - 18,853,304 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0188,986,957 - 8,996,065 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11811,303,640 - 11,309,749 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1811,303,612 - 11,309,749 (+)Ensemblpanpan1.1panPan2
ZBTB14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1771,680,692 - 71,687,651 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl771,682,578 - 71,687,703 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha771,136,728 - 71,143,682 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0771,738,166 - 71,745,177 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl771,738,166 - 71,745,276 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1771,440,837 - 71,447,786 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0771,468,973 - 71,475,935 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0771,760,581 - 71,767,581 (-)NCBIUU_Cfam_GSD_1.0
Zbtb14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494467,892,571 - 68,014,817 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367791,199,490 - 1,207,934 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367791,198,469 - 1,205,671 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZBTB14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6101,758,014 - 101,764,531 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16101,757,067 - 101,764,531 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZBTB14
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11864,388,984 - 64,398,969 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1864,389,055 - 64,394,938 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605039,261,736 - 39,268,709 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zbtb14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477015,012,887 - 15,019,805 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477015,016,689 - 15,021,000 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zbtb14
29 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:137
Count of miRNA genes:119
Interacting mature miRNAs:130
Transcripts:ENSRNOT00000022396
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)975712843111552878Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)977813894111552878Rat

Markers in Region
Zfp161  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.29109,336,409 - 109,337,215 (+)MAPPERmRatBN7.2
Rnor_6.09117,742,037 - 117,742,842NCBIRnor6.0
Rnor_5.09117,206,288 - 117,207,093UniSTSRnor5.0
RGSC_v3.49108,513,852 - 108,514,657UniSTSRGSC3.4
Celera9106,482,365 - 106,483,170UniSTS
Cytogenetic Map9q38UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 14 22 12 18 12 65 22 34 11
Low 1 29 35 29 1 29 8 11 9 13 7 8
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000022396   ⟹   ENSRNOP00000022396
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl9109,331,028 - 109,338,632 (+)Ensembl
Rnor_6.0 Ensembl9117,737,611 - 117,744,300 (+)Ensembl
RefSeq Acc Id: NM_172325   ⟹   NP_758828
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89116,780,100 - 116,785,306 (+)NCBI
mRatBN7.29109,333,440 - 109,338,646 (+)NCBI
Rnor_6.09117,739,067 - 117,744,273 (+)NCBI
Rnor_5.09117,205,246 - 117,206,593 (+)NCBI
RGSC_v3.49108,512,808 - 108,514,157 (+)RGD
Celera9106,479,395 - 106,484,601 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_758828 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAN75191 (Get FASTA)   NCBI Sequence Viewer  
  EDL90928 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000022396
  ENSRNOP00000022396.4
RefSeq Acc Id: NP_758828   ⟸   NM_172325
- UniProtKB: F1LMU5 (UniProtKB/TrEMBL),   A6KF76 (UniProtKB/TrEMBL),   Q8CGQ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000022396   ⟸   ENSRNOT00000022396
Protein Domains
BTB   C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LMU5-F1-model_v2 AlphaFold F1LMU5 1-449 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:628712 AgrOrtholog
BioCyc Gene G2FUF-26369 BioCyc
Ensembl Genes ENSRNOG00000016719 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000022396 ENTREZGENE
  ENSRNOT00000022396.7 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro BTB/POZ-like UniProtKB/TrEMBL
  BTB/POZ_fold UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report rno:282825 UniProtKB/TrEMBL
NCBI Gene 282825 ENTREZGENE
PANTHER ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 7A UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
Pfam BTB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PhenoGen Zbtb14 PhenoGen
PROSITE BTB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016719 RatGTEx
SMART BTB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP BTB/POZ_fold UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A6KF76 ENTREZGENE, UniProtKB/TrEMBL
  F1LMU5 ENTREZGENE, UniProtKB/TrEMBL
  Q8CGQ6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-07-13 Zbtb14  zinc finger and BTB domain containing 14  Zfp161  zinc finger protein 161  Name and Symbol changed 629549 APPROVED
2005-11-17 Zfp161  zinc finger protein 161      Symbol and Name status set to approved 1299863 APPROVED
2003-02-27 Zfp161  zinc finger protein 161      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_disease human homolog is a candidate gene for holoprosencephaly type 4 (HPE4) 727770