Rplp1 (ribosomal protein lateral stalk subunit P1) - Rat Genome Database

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Gene: Rplp1 (ribosomal protein lateral stalk subunit P1) Rattus norvegicus
Analyze
Symbol: Rplp1
Name: ribosomal protein lateral stalk subunit P1
RGD ID: 621774
Description: Enables ribonucleoprotein complex binding activity. Involved in cellular response to Thyroid stimulating hormone; cellular response to cAMP; and positive regulation of translation. Part of cytosolic large ribosomal subunit. Orthologous to human RPLP1 (ribosomal protein lateral stalk subunit P1); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 60S acidic ribosomal protein P1; large ribosomal subunit protein P1; MGC72935; ribosomal protein, large, P1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8871,289,539 - 71,290,872 (-)NCBIGRCr8
mRatBN7.2862,394,008 - 62,395,341 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl862,393,177 - 62,395,339 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx867,908,441 - 67,909,773 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0866,180,953 - 66,182,285 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0864,050,881 - 64,052,213 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0866,862,143 - 66,863,476 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl866,862,143 - 66,863,476 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0866,594,524 - 66,595,857 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4866,046,220 - 66,047,553 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1866,065,272 - 66,066,576 (-)NCBI
Celera861,813,792 - 61,815,125 (-)NCBICelera
Cytogenetic Map8q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Thyrotropin stimulates the expression of an acidic ribosomal protein, P0, messenger ribonucleic acid in cultured rat thyroid (FRTL) cells. Ikeda M, etal., Endocrinology. 1991 May;128(5):2540-7.
5. The primary structure of the acidic phosphoprotein P2 from rat liver 60 S ribosomal subunits. Comparison with ribosomal 'A' proteins from other species. Lin A, etal., J Biol Chem. 1982 Aug 10;257(15):9189-97.
6. Landscape of the hnRNP K protein-protein interactome. Mikula M, etal., Proteomics. 2006 Apr;6(8):2395-406.
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. GOA pipeline RGD automated data pipeline
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Comprehensive gene review and curation RGD comprehensive gene curation
11. A specific role for the phosphorylation of mammalian acidic ribosomal protein P2. Vard C, etal., J Biol Chem. 1997 Aug 8;272(32):20259-62.
12. The primary structure of rat ribosomal proteins P0, P1, and P2 and a proposal for a uniform nomenclature for mammalian and yeast ribosomal proteins. Wool IG, etal., Biochimie 1991 Jul-Aug;73(7-8):861-70.
Additional References at PubMed
PMID:3323886   PMID:12477932   PMID:12962325   PMID:15489334   PMID:21423176   PMID:23106098   PMID:23376485   PMID:24625528   PMID:24959908   PMID:25002582   PMID:35352799  


Genomics

Comparative Map Data
Rplp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8871,289,539 - 71,290,872 (-)NCBIGRCr8
mRatBN7.2862,394,008 - 62,395,341 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl862,393,177 - 62,395,339 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx867,908,441 - 67,909,773 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0866,180,953 - 66,182,285 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0864,050,881 - 64,052,213 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0866,862,143 - 66,863,476 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl866,862,143 - 66,863,476 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0866,594,524 - 66,595,857 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4866,046,220 - 66,047,553 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1866,065,272 - 66,066,576 (-)NCBI
Celera861,813,792 - 61,815,125 (-)NCBICelera
Cytogenetic Map8q24NCBI
RPLP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381569,452,818 - 69,456,205 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1569,452,814 - 69,456,205 (+)EnsemblGRCh38hg38GRCh38
GRCh371569,745,157 - 69,748,544 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361567,532,213 - 67,534,938 (+)NCBINCBI36Build 36hg18NCBI36
Build 341567,532,212 - 67,534,938NCBI
Celera1546,633,950 - 46,636,675 (+)NCBICelera
Cytogenetic Map15q23NCBI
HuRef1546,578,122 - 46,580,847 (+)NCBIHuRef
CHM1_11569,863,129 - 69,865,854 (+)NCBICHM1_1
T2T-CHM13v2.01567,274,899 - 67,278,285 (+)NCBIT2T-CHM13v2.0
Rplp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39961,820,565 - 61,821,792 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl961,820,566 - 61,821,824 (-)EnsemblGRCm39 Ensembl
GRCm38961,913,283 - 61,914,510 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl961,913,284 - 61,914,542 (-)EnsemblGRCm38mm10GRCm38
MGSCv37961,761,090 - 61,762,317 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36961,711,289 - 61,712,516 (-)NCBIMGSCv36mm8
Celera959,135,851 - 59,137,078 (-)NCBICelera
Cytogenetic Map9BNCBI
cM Map933.5NCBI
Rplp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554507,053,378 - 7,055,858 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554507,053,378 - 7,055,858 (-)NCBIChiLan1.0ChiLan1.0
RPLP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21658,717,382 - 58,720,048 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11562,881,235 - 62,884,112 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01548,403,415 - 48,406,149 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11567,173,833 - 67,176,570 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1567,173,832 - 67,176,570 (+)Ensemblpanpan1.1panPan2
RPLP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13033,342,099 - 33,346,541 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3033,277,907 - 33,280,870 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03033,543,714 - 33,546,678 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3033,491,545 - 33,546,709 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13033,469,120 - 33,472,087 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03033,530,796 - 33,533,761 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03033,778,695 - 33,781,669 (+)NCBIUU_Cfam_GSD_1.0
Rplp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640111,334,702 - 111,336,687 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647129,182,729 - 29,186,737 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647129,182,772 - 29,184,750 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPLP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1167,296,094 - 167,298,263 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11167,296,084 - 167,298,264 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21185,384,984 - 185,387,171 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPLP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12614,002,074 - 14,004,481 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2614,002,075 - 14,004,474 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048127,478,852 - 127,481,262 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rplp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247814,037,824 - 4,045,248 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247814,042,041 - 4,044,613 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rplp1
4 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:102
Count of miRNA genes:91
Interacting mature miRNAs:96
Transcripts:ENSRNOT00000018820
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
631271Lecl1Lens clarity QTL 10.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)81898416884531599Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)81933115293965294Rat
631842Inf1Infertility severity QTL 14.10.001seminal gland mass (VT:0010524)seminal vesicle wet weight (CMO:0001603)82266233067662330Rat
2303564Gluco43Glucose level QTL 433blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)82613018771130187Rat
2303572Insul13Insulin level QTL 132blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)82613018771130187Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)82720571599103503Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)82720571599103503Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)82720571599103503Rat
1300146Rf17Renal function QTL 172.9renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)82824291273242912Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)82824291299525068Rat
724514Uae15Urinary albumin excretion QTL 152.9urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)82950266570386295Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)83018886794457446Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83084815482460899Rat
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83084815482460899Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83084815482460899Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83084815482460899Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)830848154101699754Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)830848154101699754Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)830848259105647037Rat
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83085640475856404Rat
1582222Epfw2Epididymal fat weight QTL 23.20.0005epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)83173772976737729Rat
61358Bp39Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83555193880551938Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83558203280582032Rat
1331838Niddm61Non-insulin dependent diabetes mellitus QTL 613.530.0004blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83646953599083736Rat
737824Hcar10Hepatocarcinoma resistance QTL 102.9liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)84071306682925667Rat
1358906Bp253Blood pressure QTL 25340.0004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)84071306693965294Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
1331769Rf39Renal function QTL 393.871urine output (VT:0003620)timed urine volume (CMO:0000260)84186687675097878Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)84186687686866876Rat
631216Stl9Serum triglyceride level QTL 94.710.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)84186701070386132Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84269268490165460Rat
12879882Am8Aortic mass QTL 80.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)84329616998968765Rat
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)84329616998968765Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)84329616998968765Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)84329616998968765Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)84329616998968765Rat
12879883Kidm65Kidney mass QTL 650.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)84329616998968765Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088626Rat
1331837Bw23Body weight QTL 234.190.00007body mass (VT:0001259)body weight (CMO:0000012)84653172299083736Rat
2303570Gluco48Glucose level QTL 482blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)84980583194805831Rat
2313086Bss60Bone structure and strength QTL 604.10.0001tibia length (VT:0004357)tibia length (CMO:0000450)85009524982460899Rat
4889938Bss89Bone structure and strength QTL 893.8tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)85009524982460899Rat
5684973Bss100Bone structure and strength QTL 1004.7tibia area (VT:1000281)tibia area measurement (CMO:0001382)85009524982460899Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)851351728107062046Rat
10402857Bp380Blood pressure QTL 3800.95arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)85396876598968765Rat
2301402Bp316Blood pressure QTL 3160.005arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)85396876598968765Rat
2293697Bmd39Bone mineral density QTL 39femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)85404374498968765Rat
1582243Bw66Body weight QTL 663.40.0048body mass (VT:0001259)body weight (CMO:0000012)85423764485365202Rat
1582254Kidm31Kidney mass QTL 313kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)85423764485365202Rat
631664Hcar3Hepatocarcinoma resistance QTL 32.90.0005liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)85423764499103503Rat
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)854259986100382532Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat

Markers in Region
RPLP1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2178,431,994 - 8,432,082 (+)MAPPERmRatBN7.2
mRatBN7.2862,395,183 - 62,395,271 (+)MAPPERmRatBN7.2
Rnor_6.0866,863,319 - 66,863,406NCBIRnor6.0
Rnor_6.0179,234,720 - 9,234,807NCBIRnor6.0
Rnor_5.01711,393,529 - 11,393,616UniSTSRnor5.0
Rnor_5.0866,595,700 - 66,595,787UniSTSRnor5.0
RGSC_v3.4866,047,396 - 66,047,483UniSTSRGSC3.4
RGSC_v3.41714,407,913 - 14,408,000UniSTSRGSC3.4
Celera178,516,311 - 8,516,398UniSTS
Celera861,814,968 - 61,815,055UniSTS
Cytogenetic Map17p14UniSTS
Cytogenetic Map8q24UniSTS
PMC156124P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXq31UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map18q12.1UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 2 26 30 22 18 22 38 18 34 7
Medium 1 17 27 19 1 19 8 11 36 17 7 4 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001007604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC058151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000018820   ⟹   ENSRNOP00000018820
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl862,393,177 - 62,395,339 (-)Ensembl
RefSeq Acc Id: NM_001007604   ⟹   NP_001007605
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8871,289,539 - 71,290,872 (-)NCBI
mRatBN7.2862,394,008 - 62,395,341 (-)NCBI
Rnor_6.0866,862,143 - 66,863,476 (-)NCBI
Rnor_5.0866,594,524 - 66,595,857 (-)NCBI
RGSC_v3.4866,046,220 - 66,047,553 (-)RGD
Celera861,813,792 - 61,815,125 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001007605 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH58151 (Get FASTA)   NCBI Sequence Viewer  
  EDL95740 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000018820
  ENSRNOP00000018820.2
  ENSRNOP00000087435.1
  ENSRNOP00000092643.1
  ENSRNOP00055034242
  ENSRNOP00060023659
  ENSRNOP00065008206
GenBank Protein P19944 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001007605   ⟸   NM_001007604
- UniProtKB: P19944 (UniProtKB/Swiss-Prot),   A6J567 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000018820   ⟸   ENSRNOT00000018820

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P19944-F1-model_v2 AlphaFold P19944 1-114 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696048
Promoter ID:EPDNEW_R6573
Type:multiple initiation site
Name:LOC100360522_1
Description:ribosomal protein P1-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0866,863,475 - 66,863,535EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621774 AgrOrtholog
BioCyc Gene G2FUF-30181 BioCyc
Ensembl Genes ENSRNOG00000013874 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00000063015 UniProtKB/Swiss-Prot
  ENSRNOG00055024437 UniProtKB/Swiss-Prot
  ENSRNOG00060017230 UniProtKB/Swiss-Prot
  ENSRNOG00065007227 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000018820 ENTREZGENE
  ENSRNOT00000018820.6 UniProtKB/Swiss-Prot
  ENSRNOT00000107660.1 UniProtKB/Swiss-Prot
  ENSRNOT00000111700.1 UniProtKB/Swiss-Prot
  ENSRNOT00055042006 UniProtKB/Swiss-Prot
  ENSRNOT00060029434 UniProtKB/Swiss-Prot
  ENSRNOT00065011243 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.10.1410 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6888011 IMAGE-MGC_LOAD
InterPro P1/P2_N_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L12 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:140661 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:72935 IMAGE-MGC_LOAD
NCBI Gene 140661 ENTREZGENE
PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  60S ACIDIC RIBOSOMAL PROTEIN P1-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribosomal_60s UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rplp1 PhenoGen
RatGTEx ENSRNOG00000013874 RatGTEx
  ENSRNOG00000063015 RatGTEx
  ENSRNOG00055024437 RatGTEx
  ENSRNOG00060017230 RatGTEx
  ENSRNOG00065007227 RatGTEx
UniProt A6J567 ENTREZGENE, UniProtKB/TrEMBL
  P19944 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-15 Rplp1  ribosomal protein lateral stalk subunit P1  Rplp1  ribosomal protein, large, P1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-02-26 Rplp1  ribosomal protein, large, P1      Symbol and Name status set to approved 625702 APPROVED
2002-08-07 Rplp1  ribosomal protein, large, P1      Symbol and Name status set to provisional 70820 PROVISIONAL