Nova1 (NOVA alternative splicing regulator 1)

Gene: Nova1 (NOVA alternative splicing regulator 1) Rattus norvegicus

Analyze

Symbol:

Nova1

Name:

NOVA alternative splicing regulator 1

RGD ID:

621345

Description:

Predicted to enable mRNA 3'-UTR binding activity and sequence-specific mRNA binding activity. Involved in regulation of mRNA processing and spinal cord development. Predicted to be located in nucleolus and nucleoplasm. Predicted to be active in cytoplasm and nucleus. Orthologous to human NOVA1 (NOVA alternative splicing regulator 1); INTERACTS WITH (+)-pilocarpine; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

neuro-oncological ventral antigen 1; Nova-1; RNA-binding protein Nova-1

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NOVA1 (NOVA alternative splicing regulator 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Nova1 (NOVA alternative splicing regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Nova1 (NOVA alternative splicing regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NOVA1 (NOVA alternative splicing regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NOVA1 (NOVA alternative splicing regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Nova1 (NOVA alternative splicing regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NOVA1 (NOVA alternative splicing regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NOVA1 (NOVA alternative splicing regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Nova1 (NOVA alternative splicing regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	NOVA2 (NOVA alternative splicing regulator 2)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	NOVA1 (NOVA alternative splicing regulator 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Nova1 (NOVA alternative splicing regulator 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	nova2 (neuro-oncological ventral antigen 2)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoInspector\|SonicParanoid)
Danio rerio (zebrafish):	nova1 (neuro-oncological ventral antigen 1)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoInspector\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	PBP2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA)
Caenorhabditis elegans (roundworm):	nova-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	ps	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	nova1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	69,506,983 - 69,632,437 (-)	NCBI		GRCr8
mRatBN7.2	6	63,780,105 - 63,905,567 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	63,783,489 - 63,906,289 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	64,171,614 - 64,293,460 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	64,486,772 - 64,608,608 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	63,933,525 - 64,055,455 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	66,960,126 - 67,085,836 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	66,963,510 - 67,085,390 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	76,535,375 - 76,660,962 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	66,193,472 - 66,320,240 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	66,202,073 - 66,323,082 (-)	NCBI
Celera	6	62,747,220 - 62,869,241 (-)	NCBI		Celera
Cytogenetic Map	6	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Brain-Lung-Thyroid Syndrome (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-pilocarpine (EXP)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4-hydroxyphenyl retinamide (ISO)

aflatoxin B1 (ISO)

ammonium chloride (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

beryllium sulfate (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

cisplatin (ISO)

clobetasol (ISO)

copper(II) sulfate (ISO)

cytarabine (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

diclofenac (ISO)

dorsomorphin (ISO)

entinostat (ISO)

ethanol (ISO)

folic acid (ISO)

genistein (EXP)

gentamycin (EXP)

hydralazine (ISO)

lead(0) (ISO)

maneb (ISO)

miconazole (ISO)

mifepristone (ISO)

Muraglitazar (EXP)

N-methyl-4-phenylpyridinium (ISO)

nickel sulfate (ISO)

ozone (ISO)

paracetamol (ISO)

paraquat (ISO)

PCB138 (ISO)

pirinixic acid (ISO)

SB 431542 (ISO)

scopolamine (EXP)

sevoflurane (EXP)

silicon dioxide (ISO)

Soman (EXP)

tamoxifen (ISO)

temozolomide (ISO)

Tesaglitazar (EXP)

testosterone (ISO)

trichostatin A (ISO)

troglitazone (EXP)

valproic acid (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mRNA splicing, via spliceosome (IBA,IEA,ISO)

negative regulation of cold-induced thermogenesis (IEA,ISO,ISS)

regulation of alternative mRNA splicing, via spliceosome (IBA,IEA,ISO,ISS)

regulation of mRNA processing (IMP)

regulation of RNA metabolic process (ISO)

spinal cord development (IEP)

Cellular Component

cytoplasm (IBA,IEA)

intracellular membrane-bounded organelle (ISO)

nucleolus (ISO)

nucleoplasm (ISO)

nucleus (IBA,IEA,ISO,ISS)

Molecular Function

mRNA 3'-UTR binding (IEA,ISO)

mRNA binding (IBA,IEA,ISO,ISS)

protein binding (ISO)

RNA binding (ISO,ISS)

sequence-specific mRNA binding (IEA,ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Role of Nova-1 in regulating alpha2N, a novel glycine receptor splice variant, in developing spinal cord neurons.	Kumar DV, etal., J Neurobiol 2002 Aug;52(2):156-65.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	An alternative splicing program promotes adipose tissue thermogenesis.	Vernia S, etal., Elife. 2016 Sep 16;5. doi: 10.7554/eLife.17672.

Additional References at PubMed

PMID:10719891	PMID:22681889	PMID:23042482	PMID:23359859	PMID:25249621	PMID:26105073	PMID:27378374	PMID:28791345	PMID:33799408

Genomics

Comparative Map Data

Nova1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	69,506,983 - 69,632,437 (-)	NCBI		GRCr8
mRatBN7.2	6	63,780,105 - 63,905,567 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	63,783,489 - 63,906,289 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	64,171,614 - 64,293,460 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	64,486,772 - 64,608,608 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	63,933,525 - 64,055,455 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	66,960,126 - 67,085,836 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	66,963,510 - 67,085,390 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	76,535,375 - 76,660,962 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	66,193,472 - 66,320,240 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	66,202,073 - 66,323,082 (-)	NCBI
Celera	6	62,747,220 - 62,869,241 (-)	NCBI		Celera
Cytogenetic Map	6	q21	NCBI

NOVA1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	26,443,090 - 26,598,033 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	26,443,090 - 26,598,033 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	26,912,296 - 27,067,239 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	25,984,929 - 26,136,800 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	26,009,163 - 26,136,800	NCBI
Celera	14	6,779,476 - 6,931,361 (-)	NCBI		Celera
Cytogenetic Map	14	q12	NCBI
HuRef	14	7,031,090 - 7,190,872 (-)	NCBI		HuRef
CHM1_1	14	26,913,753 - 27,065,665 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	20,640,973 - 20,795,930 (-)	NCBI		T2T-CHM13v2.0

Nova1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	46,744,678 - 46,866,143 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	46,741,300 - 46,865,712 (-)	Ensembl		GRCm39 Ensembl
GRCm38	12	46,697,895 - 46,819,480 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	46,694,517 - 46,818,929 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	47,795,504 - 47,919,762 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	47,570,474 - 47,694,732 (-)	NCBI		MGSCv36	mm8
Celera	12	48,021,874 - 48,146,837 (-)	NCBI		Celera
Cytogenetic Map	12	B3	NCBI
cM Map	12	21.46	NCBI

Nova1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955409	33,680,587 - 33,815,818 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955409	33,681,947 - 33,820,356 (+)	NCBI	ChiLan1.0	ChiLan1.0

NOVA1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	27,772,225 - 27,924,686 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	26,988,723 - 27,140,162 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	7,193,308 - 7,345,535 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	25,314,077 - 25,466,715 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	25,314,077 - 25,466,861 (-)	Ensembl	panpan1.1		panPan2

NOVA1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	6,133,608 - 6,281,508 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	6,135,679 - 6,281,384 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	6,052,438 - 6,201,930 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	6,227,890 - 6,377,452 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	6,229,520 - 6,377,483 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	5,918,471 - 6,068,030 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	5,989,071 - 6,138,587 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	6,257,436 - 6,406,949 (-)	NCBI		UU_Cfam_GSD_1.0

Nova1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	38,211,656 - 38,347,469 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936494	1,717,268 - 1,853,430 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936494	1,720,030 - 1,853,177 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NOVA1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	72,805,230 - 72,961,258 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	72,805,138 - 72,961,257 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	78,002,491 - 78,041,732 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NOVA1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	3,363,652 - 3,513,901 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	3,360,831 - 3,514,435 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666036	15,126,163 - 15,276,533 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nova1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624820	5,821,477 - 5,971,637 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624820	5,821,232 - 5,973,709 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Nova1
970 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	141
Count of miRNA genes:	117
Interacting mature miRNAs:	125
Transcripts:	ENSRNOT00000050372
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2301972	Bp325	Blood pressure QTL 325	4.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	1	72227641	Rat
4145119	Mcs25	Mammary carcinoma susceptibility QTL 25		0.0001	mammary gland integrity trait (VT:0010552)	ratio of deaths to total study population during a period of time (CMO:0001023)	6	10894415	110548006	Rat
1578665	Bss16	Bone structure and strength QTL 16	4.4		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	6	11735669	72593685	Rat
1578668	Bmd14	Bone mineral density QTL 14	3.8		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	6	11735669	72593685	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	15107216	107351382	Rat
1354664	Slep2	Serum leptin concentration QTL 2	4.49		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	6	16536140	71636405	Rat
2293839	Kiddil2	Kidney dilation QTL 2	4.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	20866422	81133036	Rat
2293841	Kiddil4	Kidney dilation QTL 4	4.4		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	20866422	81133036	Rat
1331779	Rf38	Renal function QTL 38	2.876		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	6	32074428	72227641	Rat
6893340	Cm77	Cardiac mass QTL 77	0.26	0.57	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	6	33309549	81132889	Rat
1300143	Rf14	Renal function QTL 14	2.92		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	6	34434137	77102317	Rat
1354632	Scl29	Serum cholesterol level QTL 29	3.74		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	6	35098709	71636405	Rat
634307	Bp141	Blood pressure QTL 141	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	35230417	80230417	Rat
9590290	Uminl2	Urine mineral level QTL 2	3.96	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	6	38783989	83783989	Rat
9590306	Scort18	Serum corticosterone level QTL 18	2.88	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	38783989	83783989	Rat
9590140	Scort4	Serum corticosterone level QTL 4	14.49	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	38783989	83783989	Rat
634330	Pia16	Pristane induced arthritis QTL 16	3.9		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	6	45790088	104200226	Rat
4889848	Pur25	Proteinuria QTL 25	14	0.003	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	56728562	90198260	Rat
6893332	Cm74	Cardiac mass QTL 74	0.4	0.64	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	6	57730540	104085867	Rat
1558641	Cm47	Cardiac mass QTL 47	2.9	0.001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	6	57730540	104085867	Rat
70176	Mcsm1	Mammary carcinoma susceptibility modifier QTL 1			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	58632962	103632962	Rat
12801471	Schws9	Schwannoma susceptibility QTL 9			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	61747639	106747639	Rat
2293088	Iddm28	Insulin dependent diabetes mellitus QTL 28	5.21		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	6	63040562	71636266	Rat

Markers in Region

NOVA1__6065

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	63,783,483 - 63,784,096 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	66,963,505 - 66,964,117	NCBI	Rnor6.0
Rnor_5.0	6	76,538,754 - 76,539,366	UniSTS	Rnor5.0
RGSC_v3.4	6	66,196,851 - 66,197,463	UniSTS	RGSC3.4
Celera	6	62,747,215 - 62,747,827	UniSTS
Cytogenetic Map	6	q21	UniSTS

Nova1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	63,785,955 - 63,786,495 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	66,965,977 - 66,966,516	NCBI	Rnor6.0
Rnor_5.0	6	76,541,226 - 76,541,765	UniSTS	Rnor5.0
RGSC_v3.4	6	66,199,323 - 66,199,862	UniSTS	RGSC3.4
Celera	6	62,749,687 - 62,750,226	UniSTS
Cytogenetic Map	6	q21	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium									74	4	8
Low	2	40	41	25	19	25	8	11		30	33	11	8
Below cutoff	1	3	16	16		16				1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001100541	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001414916	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001414917	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240070	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240072	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111966	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111967	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261664	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261665	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY033093	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY262017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000050372 ⟹ ENSRNOP00000045624

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	63,784,937 - 63,905,114 (-)	Ensembl
Rnor_6.0 Ensembl	6	66,965,377 - 67,084,234 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000083277 ⟹ ENSRNOP00000069458

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	63,783,489 - 63,906,289 (-)	Ensembl
Rnor_6.0 Ensembl	6	66,963,510 - 67,085,390 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000103119 ⟹ ENSRNOP00000082322

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	63,784,937 - 63,906,289 (-)	Ensembl

RefSeq Acc Id:

NM_001100541 ⟹ NP_001094011

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	69,506,983 - 69,632,437 (-)	NCBI
mRatBN7.2	6	63,780,105 - 63,905,567 (-)	NCBI
Rnor_6.0	6	66,963,510 - 67,085,390 (-)	NCBI
Rnor_5.0	6	76,535,375 - 76,660,962 (-)	NCBI
Celera	6	62,747,220 - 62,869,241 (-)	NCBI

Sequence:

show sequence

ATGGCGGCAGCTCCCATTCAGCAGAACGGGACCCATACGGGGGTTCCCATAGATCTGGACCCGC
CGGACTCGCGGAAAAGGCCGCTTGAAGCGCCCCCTGAAGCCGGCAGCACCAAGAGGACCAACAC
GGGCGAAGACGGCCAGTACTTTCTAAAGGTCCTCATACCTAGTTATGCTGCTGGATCTATAATT
GGGAAGGGAGGACAGACAATTGTTCAGTTGCAAAAGGAAACGGGAGCCACGATCAAGCTGTCTA
AGTCCAAAGATTTTTATCCAGGTACTACTGAGAGGGTTTGCTTGATCCAGGGAACGATTGAAGC
ACTGAATGCAGTTCATGGATTCATTGCAGAAAAAATTCGAGAAATGCCCCAAAATGTTGCCAAG
ACAGAACCAGTCAGTATCCTGCAACCTCAGACCACCGTTAACCCTGATCGCATCAAACAAGTAA
AGATTATAGTTCCCAACAGCACAGCAGGTCTGATAATAGGGAAGGGAGGTGCTACTGTGAAGGC
TATAATGGAGCAGTCAGGGGCTTGGGTGCAGCTTTCCCAGAAACCTGATGGGATCAACTTGCAA
GAGAGGGTTGTCACTGTGAGTGGAGAACCTGAACAAAACCGAAAAGCTGTTGAACTTATCATCC
AGAAGATACAAGAGGATCCACAGAGTGGCAGCTGTCTCAATATCAGTTATGCCAATGTGACAGG
TCCAGTGGCAAATTCCAATCCAACCGGATCTCCTTATGCAAACACTGCTGAAGTGTTACCAACT
GCCGCAGCCGCCGCAGGGCTATTAGGACATGCTAACCTTGCCGGTGTTGCGGCCTTCCCAGCAG
TTTTATCTGGCTTCACAGGCAATGACCTGGTGGCCATCACCTCTGCACTTAATACATTAGCCAG
CTATGGATATAATCTCAACACATTAGGTTTAGGTCTCAGCCAAGCAGCAGCAACGGGGGCTTTG
GCTGCCGCAGCTGCCAGTGCCAACCCAGCAGCAGCAGCAGCCAATTTGTTGGCCACCTATGCCA
GTGAAGCCTCAGCCAGCGGCAGCACAGCTGGTGGAACGGCGGGGACATTTGCATTAGGTAGCCT
GGCTGCTGCTACTGCTGCAACCAATGGATACTTTGGAGCTGCCTCACCCCTAGCTGCCAGTGCC
ATTCTAGGGACAGAGAAATCCACAGATGGATCAAAGGATGTAGTTGAAATAGCAGTTCCAGAAA
ACTTAGTTGGTGCAATACTTGGCAAAGGAGGGAAAACCTTAGTGGAATACCAGGAGTTGACTGG
TGCAAGGATACAGATCTCCAAAAAGGGAGAGTTCGTACCTGGCACACGGAATCGGAAGGTAACC
ATTACTGGAACACCAGCTGCAACACAGGCTGCTCAGTATTTAATTACACAGAGGATCACATATG
AGCAAGGAGTGCGGGCCGCCAATCCTCAGAAAGTGGGTTGAGTGCCCCGATTATACGTCAGATT
GTTTTAACCCCTCCTTTACCCCATTTTCAAGAAGGATGTACTGTACTTTGCAGAAGTGAAGTTT
TTCTGTTATTAATATATAATTATGCAAATGAATGCGACTATGTTGACAATGTGTATATGTAAAT
AATATGTGTTTTACCAGATGTTTCATAGAATTTTTTCTTGACCTGTTTTGTTCTCTATACTTTG
CTTGTGTATATTTGTCAGAGGTGTTTCTAGTGTAAGATTTAAGCCTGCCATTTTACCAGCATTA
TTGTAGTTTAATGATTGAATGTAGACAGGGATATGCGTATAGTTTTCAGTCTTAGTTCTAGATA
ACACTAAATTAACTACTGTTAGGTTGAGTATGGTGGGGTCAGTGACCTAAACTGGAGTGAGGCC
AAAGCACTGTCATGTATGTCTTACTTCCTGCTTAGGGCACAGAGAAGTAGGAAACAATATTTTG
AAAATAAGTTTTAAATTTAAAATGATCAAAAAGCAATATAGTTGCATAAAAGCACTGTAAAATA
TTTAAAAGGTTAAAACTGTGGAAAATTACATTGGTAAGTTTACAGATCAATAAAAGCACCTGTT
CTCCATCTGAACTAGACAATGGAAATAATGCTGCATGCTGGCCATGGCCCATTCTTCATCATTT
GTAAGTTCAACAAAAGTTCTCACATGGAGTCCCACCTCTTCAGAGGTTTGTACATTCGTTTTTA
AGCACTGAATTCACTACTGATCCCATCGCCTGGCCAGTAGAACAGTCATTACTCCATTAACATC
TTCACTGTTTAGACACATAACTGTGGTACAGTGTATTGGAAATTTTATAAACAAACGTGAAAGT
GCCAACACATTATTGATAGCTGATAATGTTTCATTATCTGCAACTGCTGGATAAGTACGTTGCA
TTTTAAGAGCTTATAATTGTGTATAATTTGTTAACACTAGAAACCTATTAGTATTGTGAATGTA
GATTTTACTGTGAAGCTATCTGTGATTTAGCTGTTTGCTCCATGACGGAGTCCTTGCAGCATGG
CGCTAGCAGCCAGTGCAGTTTCTAATACTCGGTAATTTGCATGTTTTGTGGAGCATTTTTATGT
CACCAACCAGACAGTATTTCCTGCATGCTTATTTAGAAGAGGCAGTTTATCTTGAGAGGTAGTG
TGATCTACCTTTGTCAGGCTTTTTGACAGGTCATTTCAGAGTAAGCCTTTGTTCCCAAGACCCA
ACAACTGTCACCCTCTTCTGTACCTCTCCTGAGTGCCAACTGTCCAGGCCATTTGACACACCAT
CTGTTAACCTCTGAGTTTGCCCGCTCAAGGCCACTCATAGGGGCATCCATCCCCAAGCACCTCC
TCATGCTGTGCATGCAGTCTTAAATTCAATGGACAAAAATAAAATGCTGGCTACCTCTGGATCA
TCTGGCTGAGCAACTGAATTACAAAAGAGAATTACTTCCATCTCAACTTCCGCCCATTGGTTAC
GTCCATCCTAGCAAGCTAAATGGCATCCCAGCTGCTCCTTTCTGTGCAACCAATTAAAGAACAA
TGAGTGTGATGCTCCATGTCTGAATTTCGTCCAGCCTCTCTCTGAACTGTGATCTTTGTCCTCA
TGAACTTTCCCTTTTGTTCATTGAACTATATGGACTCTTCATTTCATATTGATTTACTGTGCAA
TTTACTTTTGGACATTGAGAACTTGAAATTATTTCCTGATCCCTTCCCCTTCCACTATTAATAA
TTCATTTCTGTCAAACTGTAAGAGTAGGACTCATTTTTTTTTTTTAGTTTTTAACATTGGACTG
TTATTTCATTTAGAGTTCTCTATCTCTAAATATTTATTTAGAGAATGATTTTCAAAGGGAATGA
TATGCTTGTTTAAATGAAAGAGAAAAGCTGTAGTAAACTGTGTTAATTGGTAATGACTATTTAT
CGTCGATACTCTGTAGCTGTGTAAGTTTTGACAAATAGTGTATCTCGTGGAATCAGTGGTTAGC
ATTGCCGCTATTATATTTACTCATTTTATCATTATAAATGTGCTTAGTTCATCATGTA

hide sequence

RefSeq Acc Id:

NM_001414916 ⟹ NP_001401845

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	69,506,983 - 69,632,437 (-)	NCBI
mRatBN7.2	6	63,780,105 - 63,905,567 (-)	NCBI

RefSeq Acc Id:

NM_001414917 ⟹ NP_001401846

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	69,506,983 - 69,632,437 (-)	NCBI
mRatBN7.2	6	63,780,105 - 63,905,567 (-)	NCBI

RefSeq Acc Id:

XM_006240070 ⟹ XP_006240132

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	69,510,367 - 69,632,134 (-)	NCBI
mRatBN7.2	6	63,780,105 - 63,905,268 (-)	NCBI
Rnor_6.0	6	66,960,126 - 67,085,131 (-)	NCBI
Rnor_5.0	6	76,535,375 - 76,660,962 (-)	NCBI

Sequence:

show sequence

GGGTTCTGAGCCGACCCGCTCGCCCCAGCCGGTGCTGGCCCCGGCGACAGGGTCCGCTCCCAGG
GCCGCCCCCCGCGAGAGGTGATGGCCGCCTGAAGATGCGCGCTGCATTTAACAGTCTGATCAAA
TAAATAAATAAATGGCACTTGGGTAGCGGCTTGCAGATGCTGGGGGCACCGGAGACTTTTGCCT
CTGTTCATCCCCTTGCTCTGGGCCACAAGTAGTATGCAAAATCTTGATGAGTGCATGCCCTGAG
CGCACTTACATGGTCGGTACAAATATCGCATTGATTTGTCTTCAAGGGTATGCATACGAGGGGG
GTGTCTGGTACGGTGACTTGTTAGTTAACATCCTGCGCTTCCTCGGAAGATGAGTTATAACGGG
ACCGCTATCGCTTCTTCATTTGCACTGGAGTCATCTTAACAATGCATCCAATGCATCGAAGCAG
AGAAGACGGCCAGTACTTTCTAAAGGTCCTCATACCTAGTTATGCTGCTGGATCTATAATTGGG
AAGGGAGGACAGACAATTGTTCAGTTGCAAAAGGAAACGGGAGCCACGATCAAGCTGTCTAAGT
CCAAAGATTTTTATCCAGGTACTACTGAGAGGGTTTGCTTGATCCAGGGAACGATTGAAGCACT
GAATGCAGTTCATGGATTCATTGCAGAAAAAATTCGAGAAATGCCCCAAAATGTTGCCAAGACA
GAACCAGTCAGTATCCTGCAACCTCAGACCACCGTTAACCCTGATCGCATCAAACAAACATTGC
CATCTTCCCCAACTACCACCAAGTCCTCTCCATCTGACCCCATGACCACCTCCAGAGCCAATCA
GGTAAAGATTATAGTTCCCAACAGCACAGCAGGTCTGATAATAGGGAAGGGAGGTGCTACTGTG
AAGGCTATAATGGAGCAGTCAGGGGCTTGGGTGCAGCTTTCCCAGAAACCTGATGGGATCAACT
TGCAAGAGAGGGTTGTCACTGTGAGTGGAGAACCTGAACAAAACCGAAAAGCTGTTGAACTTAT
CATCCAGAAGATACAAGAGGATCCACAGAGTGGCAGCTGTCTCAATATCAGTTATGCCAATGTG
ACAGGTCCAGTGGCAAATTCCAATCCAACCGGATCTCCTTATGCAAACACTGCTGAAGTGTTAC
CAACTGCCGCAGCCGCCGCAGGGCTATTAGGACATGCTAACCTTGCCGGTGTTGCGGCCTTCCC
AGCAGTTTTATCTGGCTTCACAGGCAATGACCTGGTGGCCATCACCTCTGCACTTAATACATTA
GCCAGCTATGGATATAATCTCAACACATTAGGTTTAGGTCTCAGCCAAGCAGCAGCAACGGGGG
CTTTGGCTGCCGCAGCTGCCAGTGCCAACCCAGCAGCAGCAGCAGCCAATTTGTTGGCCACCTA
TGCCAGTGAAGCCTCAGCCAGCGGCAGCACAGCTGGTGGAACGGCGGGGACATTTGCATTAGGT
AGCCTGGCTGCTGCTACTGCTGCAACCAATGGATACTTTGGAGCTGCCTCACCCCTAGCTGCCA
GTGCCATTCTAGGGACAGAGAAATCCACAGATGGATCAAAGGATGTAGTTGAAATAGCAGTTCC
AGAAAACTTAGTTGGTGCAATACTTGGCAAAGGAGGGAAAACCTTAGTGGAATACCAGGAGTTG
ACTGGTGCAAGGATACAGATCTCCAAAAAGGGAGAGTTCGTACCTGGCACACGGAATCGGAAGG
TAACCATTACTGGAACACCAGCTGCAACACAGGCTGCTCAGTATTTAATTACACAGAGGATCAC
ATATGAGCAAGGAGTGCGGGCCGCCAATCCTCAGAAAGTGGGTTGAGTGCCCCGATTATACGTC
AGATTGTTTTAACCCCTCCTTTACCCCATTTTCAAGAAGGATGTACTGTACTTTGCAGAAGTGA
AGTTTTTCTGTTATTAATATATAATTATGCAAATGAATGCGACTATGTTGACAATGTGTATATG
TAAATAATATGTGTTTTACCAGATGTTTCATAGAATTTTTTCTTGACCTGTTTTGTTCTCTATA
CTTTGCTTGTGTATATTTGTCAGAGGTGTTTCTAGTGTAAGATTTAAGCCTGCCATTTTACCAG
CATTATTGTAGTTTAATGATTGAATGTAGACAGGGATATGCGTATAGTTTTCAGTCTTAGTTCT
AGATAACACTAAATTAACTACTGTTAGGTTGAGTATGGTGGGGTCAGTGACCTAAACTGGAGTG
AGGCCAAAGCACTGTCATGTATGTCTTACTTCCTGCTTAGGGCACAGAGAAGTAGGAAACAATA
TTTTGAAAATAAGTTTTAAATTTAAAATGATCAAAAAGCAATATAGTTGCATAAAAGCACTGTA
AAATATTTAAAAGGTTAAAACTGTGGAAAATTACATTGGTAAGTTTACAGATCAATAAAAGCAC
CTGTTCTCCATCTGAACTAGACAATGGAAATAATGCTGCATGCTGGCCATGGCCCATTCTTCAT
CATTTGTAAGTTCAACAAAAGTTCTCACATGGAGTCCCACCTCTTCAGAGGTTTGTACATTCGT
TTTTAAGCACTGAATTCACTACTGATCCCATCGCCTGGCCAGTAGAACAGTCATTACTCCATTA
ACATCTTCACTGTTTAGACACATAACTGTGGTACAGTGTATTGGAAATTTTATAAACAAACGTG
AAAGTGCCAACACATTATTGATAGCTGATAATGTTTCATTATCTGCAACTGCTGGATAAGTACG
TTGCATTTTAAGAGCTTATAATTGTGTATAATTTGTTAACACTAGAAACCTATTAGTATTGTGA
ATGTAGATTTTACTGTGAAGCTATCTGTGATTTAGCTGTTTGCTCCATGACGGAGTCCTTGCAG
CATGGCGCTAGCAGCCAGTGCAGTTTCTAATACTCGGTAATTTGCATGTTTTGTGGAGCATTTT
TATGTCACCAACCAGACAGTATTTCCTGCATGCTTATTTAGAAGAGGCAGTTTATCTTGAGAGG
TAGTGTGATCTACCTTTGTCAGGCTTTTTGACAGGTCATTTCAGAGTAAGCCTTTGTTCCCAAG
ACCCAACAACTGTCACCCTCTTCTGTACCTCTCCTGAGTGCCAACTGTCCAGGCCATTTGACAC
ACCATCTGTTAACCTCTGAGTTTGCCCGCTCAAGGCCACTCATAGGGGCATCCATCCCCAAGCA
CCTCCTCATGCTGTGCATGCAGTCTTAAATTCAATGGACAAAAATAAAATGCTGGCTACCTCTG
GATCATCTGGCTGAGCAACTGAATTACAAAAGAGAATTACTTCCATCTCAACTTCCGCCCATTG
GTTACGTCCATCCTAGCAAGCTAAATGGCATCCCAGCTGCTCCTTTCTGTGCAACCAATTAAAG
AACAATGAGTGTGATGCTCCATGTCTGAATTTCGTCCAGCCTCTCTCTGAACTGTGATCTTTGT
CCTCATGAACTTTCCCTTTTGTTCATTGAACTATATGGACTCTTCATTTCATATTGATTTACTG
TGCAATTTACTTTTGGACATTGAGAACTTGAAATTATTTCCTGATCCCTTCCCCTTCCACTATT
AATAATTCATTTCTGTCAAACTGTAAGAGTAGGACTCATTTTTTTTTTTTAGTTTTTAACATTG
GACTGTTATTTCATTTAGAGTTCTCTATCTCTAAATATTTATTTAGAGAATGATTTTCAAAGGG
AATGATATGCTTGTTTAAATGAAAGAGAAAAGCTGTAGTAAACTGTGTTAATTGGTAATGACTA
TTTATCGTCGATACTCTGTAGCTGTGTAAGTTTTGACAAATAGTGTATCTCGTGGAATCAGTGG
TTAGCATTGCCGCTATTATATTTACTCATTTTATCATTATAAATGTGCTTAGTTCATCATGTAG
CATCACTTGTCTCCCGTCTCATTTTTTCCTTGCATGTCACAAGTCTCAGATCATTTATAATACA
TTAACAGTAAATAATATCTATGTAAATTTCTTTCACCATGCTGTCTCAGAGTCAGCAGTGAAGA
AAGGCAAAGATTGGGGCCCCACTCATTGGAAGAAGGGAAAGGAAGCGATCTAGGATGTGTATTA
GAAGCATTTCAAATGTCGGGTCTTTAAAATGTTTTGTTCAGTATTAGCAAACCTTTAATCTTTT
TTTCAAAATTCCAGTAGTCCACTGTGGAGCCCATACATTTCATCTGGAATTTAATGTTTCTTTG
AAGCCAAACCATTTAGCAGTTATGTGTATTTTATTAGCTAGCGTGGCTGACAGTGCACTCAGTT
CAATTTTAATTGTAAATGGGAATTCCAAACTTTTCCTACTTGGCATGGTTATCTGTTAGTTAAA
ACCAAAAGCTAAATTGGAGATATTTACATTTTAATTTATGGTAACAAATATGGGTTTGTATGCA
TTATGTGTAAATCAGCTTCATGCTGTTTAAAAAAACGTACTGAAATTTATAGACCATGTAGAAT
TGATTTGTGATGCGATGCTTTAATTTATTGCAAGAAAATTAGTATGGCTTCAGACTGCCACAGG
TCGGCGTGTGACGATGGCTGTTCAGCCATACTGATCCAAAGTGGGGAAAACTGGTGACACAAGG
CAAAACATCTCATGAAATGCAACTATTTATAGTCTTGTTTCGCTATAAGGAGGCTGGTGAACAC
GCTGAATACGAATTACCTCAGTTCTGCAGCTTTCTGTGTCTTTTTAATGCATTCTGTTTCAGGG
TCACTTTCAATCAATATTTCATTTACTTACTGAGATTGAATGGGCGCTCTGAGACACAGTGTGC
TGTTTATCATACAGATTGGACACCTCATTCTAGATCCGAGATCTTTTCCTCAACACTGGGAGCT
GTCCTTTCAGCACCACAAAATTACTGCTTGAAGCTGCATTGCAGTTTATTTTCTTTGTTTTGGT
TTTTGTTTGGTTCTTTGTTTTTGTTTTTGGTTGTTTCTTTGGTTCTTTTGTTTTGTTTTGTTTT
CTGTTTTCACTGGGAGCTTTTCTTTCAGCACCACATTGCACCTAGACTTTTTAACGGCTGCCTT
CCTCTTTGCACTGAAGACCAATTTCGTCTGCACTTCCAGTTATTTGCTATTACCTGTAGGACTT
TCAATCCTACTTCACCTCACCCAGCCCACTCCCAAAACAGTAAATGTATCTATTTCTGTGGAAA
TCATTTCTCATTGAATGATCAGAAAGAATGATAAGTTCTAACCTGTAACGGCTCATTTCGACTC
ATTGCTTACAGTAGACCTAAGCTCTGTTTTCCTGCTTATTCGACTCCTTCCAGCTTCCCATCAC
ATCTGTAACAAACTCTCAAAATGATATTGCCACACCGCCATGCACAAGCCTACCTGCACAGTAG
AGATAGATTATTCCATCGCATTCAGATGGTTAACAGAGGTTAGCAAGTCCTGTATTATATATTT
ATATCGCTTTCTAAGAAAGTGCATATTAATGTTTACTTTAAGAATGTGTAAATGGTGCTATCAA
GAATCTGATAAATTTTATCCCAGTTTTTTGTGTACCACTTCTAATGTATGAGATTTATTTTTTT
ATTGGAAAAAATAAACAGTATGAAAGCATTAAATTGGTAGATTTTAGTAATTTGACAATGAATG
GAATCCCCATGTTACAGGCCCTATCTTTTCTTAGAAATTTTAATGGTGGTAATAGACTTCAACA
GAGGTACTGGTTACAACATTCCTTTTAATCCATTCTTATGGTACATTCTTGATTCATATAATGA
TTCCTCACTGAGTCCTTAAGTAAATTTTGTTTACTGTAATTCTTCTCCAAGAAGGGAATTCTTG
CTTTCCAAGGCAGCAATTGAAAGGAGATGAAAATACAATTTAACATTCTACATCCACAAACACA
ATTTAAGACCAGTTACTCTGTTAGTAGCAGAAATTCATTGATCATCAAATTCAGGGCAAGCATG
GCTATAAGTAATAATTTTGAGTGCAATGTAATCTTAGAAATTTAATATATACACTTTATTTAAA
TGATGCAAACAGCCATATGAAATTCTTTATGATTAGAAAACAGGATGAACTCATTTTGCCTCCT
GCTTGGTTTCTCATAAACATGAGTACATGCTATTGTTGTGCACTGTTGTCCATAGATGTCTTTT
TACATAAAGGGTAAGTATCATTACTTTACAATTATTTTTGGAATTTTGCATGTTATTTTTGTTT
CATCAGATATGTGCCCCCAATTAAATAACGTTTTTGCGAAAAAAGAAAGTATCAGAAACTTGTG
TTAATTTTCAAAACAAAGCAAAGTGTAGAACATTATTAGATAGGATGTCATTCCACTGGTCTAT
AAAAACAAAAAGCAACTGTTCTTGAAAATTGAAGCATTACCTTGTATAATTAATAAAGTACATC
AAATCAGATTTGTAAATAAAATATTGTTTAAATCTAAAGTATTCAATATTTTGATTAGATTATT
TTTTTAAGGAAAATATTTAACGTGTATGTGCTGAATTTTTTTTTAAATAGTTTTTTATAATTGC
GATGGAAGGGCAATTGTCTCATTAAAAGTGGTGCAGAGGCCAATACTTGGGTTGCCATTAGATA
TATAAACAAGTGAAAACTGTGGAACAAGTTTTAAGCTCATTTTGGAAAAAAAAACAGTTCTGTA
GAAATGCATATTTGTATTTGTTTCTCTAATAAATCTGCAAATAGCTTTAAACACAAATTAGTTT
TAATTATTTAAACATGAGTTCTGTTAAGTAACTTAATATCTGTTTTGCCTTACATTGTGTGAAA
ACATTGTCCTGTGGAAATGAATACAGGCTTATAGTGAAAATCAAGGTAGGTCTGCATTTATTTG
AAAAAACCAAGCATTTAGCACTTAGGTGTGCTTACCGCTATGAAATCATTGGAGAATTTGCATA
GAAGACAGTACTGCCCCATATCACACCAGCTAATCTACTGCTGAAATCAATAGAGGACCAGTTT
GAATCTGCTTTAACTCAGTATCAAGTAAGAGACGAACAAGTAAGTGCAATCACATCTGAATGTT
TGATACCGGAACCCTGATGGTGCCAGTGCTCTTCGTCAATAGAGCGAGGAAGTAATGTGGCTTC
TCACTGCAGAGACCTGGTCTTCTTCAATGTGTTTTACACACAATTAAAAATATTGTCCCTGGTA
ACATGTATTCCATGAAATAGTATGAAATGTTTTAGGATAACATACAGTTGTCTCTCTGTTGTTA
ATATAGCATCTCCACTTTGAAAATGCTTGAAGGAGATAAATATACATGAAAATCA

hide sequence

RefSeq Acc Id:

XM_039111963 ⟹ XP_038967891

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	69,510,367 - 69,631,639 (-)	NCBI
mRatBN7.2	6	63,780,105 - 63,904,586 (-)	NCBI

RefSeq Acc Id:

XM_039111964 ⟹ XP_038967892

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	69,510,367 - 69,632,134 (-)	NCBI
mRatBN7.2	6	63,780,105 - 63,905,269 (-)	NCBI

RefSeq Acc Id:

XM_039111966 ⟹ XP_038967894

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	69,510,367 - 69,630,681 (-)	NCBI
mRatBN7.2	6	63,780,105 - 63,903,807 (-)	NCBI

RefSeq Acc Id:

XM_039111967 ⟹ XP_038967895

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	69,510,367 - 69,630,662 (-)	NCBI
mRatBN7.2	6	63,780,105 - 63,903,779 (-)	NCBI

RefSeq Acc Id:

XM_063261663 ⟹ XP_063117733

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	69,510,367 - 69,631,639 (-)	NCBI

RefSeq Acc Id:

XM_063261664 ⟹ XP_063117734

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	69,510,367 - 69,540,358 (-)	NCBI

RefSeq Acc Id:

XM_063261665 ⟹ XP_063117735

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	69,513,551 - 69,632,416 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001094011	(Get FASTA)	NCBI Sequence Viewer
	NP_001401845	(Get FASTA)	NCBI Sequence Viewer
	NP_001401846	(Get FASTA)	NCBI Sequence Viewer
	XP_006240132	(Get FASTA)	NCBI Sequence Viewer
	XP_038967891	(Get FASTA)	NCBI Sequence Viewer
	XP_038967892	(Get FASTA)	NCBI Sequence Viewer
	XP_038967894	(Get FASTA)	NCBI Sequence Viewer
	XP_038967895	(Get FASTA)	NCBI Sequence Viewer
	XP_063117733	(Get FASTA)	NCBI Sequence Viewer
	XP_063117734	(Get FASTA)	NCBI Sequence Viewer
	XP_063117735	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAK55112	(Get FASTA)	NCBI Sequence Viewer
	AAP20872	(Get FASTA)	NCBI Sequence Viewer
	EDM03360	(Get FASTA)	NCBI Sequence Viewer
	EDM03361	(Get FASTA)	NCBI Sequence Viewer
	EDM03362	(Get FASTA)	NCBI Sequence Viewer
	EDM03363	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000045624
	ENSRNOP00000045624.4
	ENSRNOP00000069458
	ENSRNOP00000069458.1
	ENSRNOP00000082322
	ENSRNOP00000082322.1
GenBank Protein	Q80WA4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001094011 ⟸ NM_001100541
- Peptide Label:	isoform 2
- UniProtKB:	A0A0G2JVE8 (UniProtKB/TrEMBL), A6HBF5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAAPIQQNGTHTGVPIDLDPPDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSII GKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQNVAK TEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQ ERVVTVSGEPEQNRKAVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYANTAEVLPT AAAAAGLLGHANLAGVAAFPAVLSGFTGNDLVAITSALNTLASYGYNLNTLGLGLSQAAATGAL AAAAASANPAAAAANLLATYASEASASGSTAGGTAGTFALGSLAAATAATNGYFGAASPLAASA ILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVT ITGTPAATQAAQYLITQRITYEQGVRAANPQKVG hide sequence

RefSeq Acc Id:	XP_006240132 ⟸ XM_006240070
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JVE8 (UniProtKB/TrEMBL), D4AAF8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MHPMHRSREDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCL IQGTIEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPSDP MTTSRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQ NRKAVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYANTAEVLPTAAAAAGLLGHAN LAGVAAFPAVLSGFTGNDLVAITSALNTLASYGYNLNTLGLGLSQAAATGALAAAAASANPAAA AANLLATYASEASASGSTAGGTAGTFALGSLAAATAATNGYFGAASPLAASAILGTEKSTDGSK DVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQ YLITQRITYEQGVRAANPQKVG hide sequence

RefSeq Acc Id:

ENSRNOP00000069458 ⟸ ENSRNOT00000083277

RefSeq Acc Id:

ENSRNOP00000045624 ⟸ ENSRNOT00000050372

RefSeq Acc Id:	XP_038967892 ⟸ XM_039111964
- Peptide Label:	isoform X3
- UniProtKB:	A0A0G2JVE8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038967891 ⟸ XM_039111963
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2JVE8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038967894 ⟸ XM_039111966
- Peptide Label:	isoform X6
- UniProtKB:	A6HBF7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038967895 ⟸ XM_039111967
- Peptide Label:	isoform X6
- UniProtKB:	A6HBF7 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000082322 ⟸ ENSRNOT00000103119

RefSeq Acc Id:	NP_001401845 ⟸ NM_001414916
- Peptide Label:	isoform 1
- UniProtKB:	A0A0G2JVE8 (UniProtKB/TrEMBL), A0A8I6G9C1 (UniProtKB/TrEMBL), A6HBF6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001401846 ⟸ NM_001414917
- Peptide Label:	isoform 3
- UniProtKB:	A6HBF7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063117733 ⟸ XM_063261663
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063117734 ⟸ XM_063261664
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063117735 ⟸ XM_063261665
- Peptide Label:	isoform X7

Protein Domains

K Homology KH

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q80WA4-F1-model_v2	AlphaFold	Q80WA4	1-474	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621345	AgrOrtholog
BioCyc Gene	G2FUF-37657	BioCyc
Ensembl Genes	ENSRNOG00000031440	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000050372.5	UniProtKB/TrEMBL
	ENSRNOT00000083277	ENTREZGENE
	ENSRNOT00000083277.2	UniProtKB/TrEMBL
	ENSRNOT00000103119	ENTREZGENE
	ENSRNOT00000103119.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.1370.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	KH-I_NOVA_rpt1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	KH-I_NOVA_rpt2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	KH-I_NOVA_rpt3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	KH_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	KH_dom_type_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	KH_dom_type_1_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:298992	UniProtKB/TrEMBL
NCBI Gene	Nova1	ENTREZGENE
PANTHER	KH DOMAIN CONTAINING RNA BINDING PROTEIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR10288:SF229	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	KH_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Nova1	PhenoGen
PROSITE	KH_TYPE_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000031440	RatGTEx
SMART	SM00322	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF54791	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2JVE8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6G9C1	ENTREZGENE, UniProtKB/TrEMBL
	A6HBF5	ENTREZGENE, UniProtKB/TrEMBL
	A6HBF6	ENTREZGENE, UniProtKB/TrEMBL
	A6HBF7	ENTREZGENE, UniProtKB/TrEMBL
	A6HBF8_RAT	UniProtKB/TrEMBL
	D4AAF8	ENTREZGENE, UniProtKB/TrEMBL
	NOVA1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-05-12	Nova1	NOVA alternative splicing regulator 1	Nova1	neuro-oncological ventral antigen 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Nova1	neuro-oncological ventral antigen 1			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	Nova1	neuro-oncological ventral antigen 1			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_transcript	has three splice variant isoforms	708602

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar