Psmb7 (proteasome 20S subunit beta 7) - Rat Genome Database

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Gene: Psmb7 (proteasome 20S subunit beta 7) Rattus norvegicus
Analyze
Symbol: Psmb7
Name: proteasome 20S subunit beta 7
RGD ID: 621093
Description: Predicted to enable endopeptidase activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in nuclear body. Predicted to be part of proteasome core complex, beta-subunit complex. Predicted to be active in cytosol and nucleus. Orthologous to human PSMB7 (proteasome 20S subunit beta 7); PARTICIPATES IN ubiquitin/proteasome degradation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dibromophenyl 2,4,5-tribromophenyl ether; acrylamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: macropain chain Z; multicatalytic endopeptidase complex chain Z; proteasome (prosome, macropain) subunit, beta type 7; proteasome (prosome, macropain) subunit, beta type, 7; proteasome beta 7 subunit; proteasome subunit beta 7; proteasome subunit beta type-7; proteasome subunit Z; Z
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8342,767,500 - 42,827,470 (-)NCBIGRCr8
mRatBN7.2322,357,777 - 22,417,748 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl322,354,698 - 22,417,937 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx325,825,962 - 25,885,969 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0334,410,959 - 34,470,964 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0332,223,450 - 32,283,379 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0322,890,072 - 22,951,718 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl322,871,105 - 22,952,063 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0328,115,649 - 28,176,245 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4318,384,197 - 18,451,208 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1318,280,569 - 18,347,580 (-)NCBI
Celera320,792,720 - 20,851,768 (-)NCBICelera
Cytogenetic Map3q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Experimental Data Annotations    Click to see Annotation Detail View

Vertebrate Trait
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
coat/hair pigmentation trait  ISOPSMB7 (Canis lupus familiaris)9068941Coat colour and harlequinOMIAPMID:18513894 more ...

Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
3-methylcholanthrene  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenic trichloride  (ISO)
benzatropine  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
cadmium dichloride  (EXP)
carbon nanotube  (ISO)
chlormequat chloride  (EXP)
chloropicrin  (ISO)
choline  (ISO)
clobetasol  (ISO)
clofibrate  (EXP,ISO)
clofibric acid  (EXP)
clozapine  (ISO)
cobalt dichloride  (EXP)
cocaine  (EXP)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dicrotophos  (ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
fenthion  (ISO)
finasteride  (EXP)
flutamide  (EXP)
folic acid  (ISO)
heparin  (ISO)
inulin  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
nefazodone  (EXP)
nickel atom  (ISO)
nimesulide  (EXP)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
piperonyl butoxide  (EXP)
pirinixic acid  (ISO)
resveratrol  (ISO)
Salinomycin  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
stattic  (ISO)
sunitinib  (ISO)
T-2 toxin  (EXP)
tetrachloromethane  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
tungsten  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Experimental Data Annotations     Click to see Annotation Detail View

Vertebrate Trait

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. The mouse genes encoding the third pair of beta-type proteasome subunits regulated reciprocally by IFN-gamma: structural comparison, chromosomal localization, and analysis of the promoter. Hayashi M, etal., J Immunol 1997 Sep 15;159(6):2760-70.
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334   PMID:16857966   PMID:17323924   PMID:20498273   PMID:21630459   PMID:22793692   PMID:23106098   PMID:23376485   PMID:23969338   PMID:24270810  


Genomics

Comparative Map Data
Psmb7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8342,767,500 - 42,827,470 (-)NCBIGRCr8
mRatBN7.2322,357,777 - 22,417,748 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl322,354,698 - 22,417,937 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx325,825,962 - 25,885,969 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0334,410,959 - 34,470,964 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0332,223,450 - 32,283,379 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0322,890,072 - 22,951,718 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl322,871,105 - 22,952,063 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0328,115,649 - 28,176,245 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4318,384,197 - 18,451,208 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1318,280,569 - 18,347,580 (-)NCBI
Celera320,792,720 - 20,851,768 (-)NCBICelera
Cytogenetic Map3q12NCBI
PSMB7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389124,353,465 - 124,415,442 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9124,353,465 - 124,415,444 (-)EnsemblGRCh38hg38GRCh38
GRCh379127,115,744 - 127,177,721 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369126,155,565 - 126,217,542 (-)NCBINCBI36Build 36hg18NCBI36
Build 349124,195,298 - 124,257,275NCBI
Celera997,762,981 - 97,824,932 (-)NCBICelera
Cytogenetic Map9q33.3NCBI
HuRef996,700,699 - 96,790,409 (-)NCBIHuRef
CHM1_19127,264,760 - 127,326,757 (-)NCBICHM1_1
T2T-CHM13v2.09136,551,512 - 136,613,496 (-)NCBIT2T-CHM13v2.0
Psmb7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39238,478,058 - 38,533,964 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl238,478,048 - 38,534,099 (-)EnsemblGRCm39 Ensembl
GRCm38238,588,046 - 38,643,952 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl238,588,036 - 38,644,087 (-)EnsemblGRCm38mm10GRCm38
MGSCv37238,443,566 - 38,499,426 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36238,410,055 - 38,465,915 (-)NCBIMGSCv36mm8
Celera240,309,890 - 40,367,955 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map224.42NCBI
Psmb7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554193,706,226 - 3,761,780 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554193,706,273 - 3,761,603 (+)NCBIChiLan1.0ChiLan1.0
PSMB7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21114,939,086 - 15,001,084 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1914,941,435 - 15,003,430 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0995,475,378 - 95,540,314 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19123,995,678 - 124,057,491 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9123,995,678 - 124,057,483 (-)Ensemblpanpan1.1panPan2
PSMB7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1958,529,646 - 58,593,016 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl958,529,723 - 58,593,016 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha957,726,668 - 57,789,932 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0959,449,060 - 59,512,699 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl959,449,136 - 59,512,699 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1958,207,216 - 58,270,483 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0958,523,766 - 58,587,042 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0958,614,281 - 58,677,679 (+)NCBIUU_Cfam_GSD_1.0
Psmb7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947192,866,027 - 192,921,441 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648712,631,612 - 12,689,936 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648712,634,561 - 12,689,914 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSMB7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1265,172,237 - 265,235,387 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11265,172,257 - 265,235,389 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21298,943,412 - 299,006,545 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PSMB7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11213,722,982 - 13,790,427 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1213,728,724 - 13,793,290 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660792,286,572 - 2,349,790 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Psmb7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476010,678,673 - 10,738,009 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476010,678,800 - 10,738,008 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Psmb7
148 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:110
Count of miRNA genes:95
Interacting mature miRNAs:96
Transcripts:ENSRNOT00000016876
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3822719433703538Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)3865816227494778Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3865816227494778Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)31077870450302886Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)31077882330356773Rat
1558657Cm43Cardiac mass QTL 436.60.0000000293heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)31695470861954708Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)heart rate (CMO:0000002)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)heart rate (CMO:0000002)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)31737470335528639Rat
2325840Bp345Blood pressure QTL 3450.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31831145428441896Rat
731172Bp151Blood pressure QTL 1510.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31831145447233430Rat
12879849Bw180Body weight QTL 1800.037body mass (VT:0001259)body weight (CMO:0000012)31831145447233430Rat
12879850Cm91Cardiac mass QTL 910.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)31831145447233430Rat
12879851Cm92Cardiac mass QTL 920.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)31831145447233430Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)31831145447233430Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)31831145447233430Rat
12879854Kidm63Kidney mass QTL 630.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)31831145447233430Rat
10450804Scl70Serum cholesterol level QTL 704.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
10450794Scl69Serum cholesterol level QTL 696.30.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat

Markers in Region
AU046771  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2322,403,188 - 22,403,429 (+)MAPPERmRatBN7.2
Rnor_6.0322,935,507 - 22,935,747NCBIRnor6.0
Rnor_5.0328,160,783 - 28,161,023UniSTSRnor5.0
RGSC_v3.4318,429,802 - 18,430,042UniSTSRGSC3.4
Celera320,838,040 - 20,838,280UniSTS
Cytogenetic Map3q11UniSTS
AA891777  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 Map21555.7UniSTS
Cytogenetic Map3q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_053532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF285103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000016876   ⟹   ENSRNOP00000016876
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl322,890,203 - 22,951,711 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000083850   ⟹   ENSRNOP00000069167
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl322,871,105 - 22,952,063 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000085981   ⟹   ENSRNOP00000073989
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl322,354,698 - 22,417,937 (-)Ensembl
Rnor_6.0 Ensembl322,890,073 - 22,951,718 (-)Ensembl
RefSeq Acc Id: NM_053532   ⟹   NP_445984
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8342,767,500 - 42,827,470 (-)NCBI
mRatBN7.2322,357,777 - 22,417,748 (-)NCBI
Rnor_6.0322,890,072 - 22,951,718 (-)NCBI
Rnor_5.0328,115,649 - 28,176,245 (-)NCBI
RGSC_v3.4318,384,197 - 18,451,208 (-)RGD
Celera320,792,720 - 20,851,768 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_445984 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF97811 (Get FASTA)   NCBI Sequence Viewer  
  AAH60551 (Get FASTA)   NCBI Sequence Viewer  
  EDM00513 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000073989
  ENSRNOP00000073989.2
GenBank Protein Q9JHW0 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_445984   ⟸   NM_053532
- UniProtKB: Q9JHW0 (UniProtKB/Swiss-Prot),   A0A8L2R849 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000016876   ⟸   ENSRNOT00000016876
RefSeq Acc Id: ENSRNOP00000073989   ⟸   ENSRNOT00000085981
RefSeq Acc Id: ENSRNOP00000069167   ⟸   ENSRNOT00000083850
Protein Domains
Proteasome beta subunit C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JHW0-F1-model_v2 AlphaFold Q9JHW0 1-277 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692051
Promoter ID:EPDNEW_R2576
Type:multiple initiation site
Name:Psmb7_1
Description:proteasome subunit beta 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0322,951,725 - 22,951,785EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621093 AgrOrtholog
BioCyc Gene G2FUF-49909 BioCyc
Ensembl Genes ENSRNOG00000011732 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000085981 ENTREZGENE
  ENSRNOT00000085981.2 UniProtKB/TrEMBL
Gene3D-CATH 3.60.20.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6922407 IMAGE-MGC_LOAD
InterPro Ntn_hydrolases_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pept_T1A_subB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Proteasome_bsu_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Proteasome_bsu_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Proteasome_sua/b UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Proteasome_suB-type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:85492 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72743 IMAGE-MGC_LOAD
NCBI Gene 85492 ENTREZGENE
PANTHER METALLOPROTEASE TLDD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEASOME SUBUNIT BETA TYPE-7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Pr_beta_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Proteasome UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Psmb7 PhenoGen
PRINTS PROTEASOME UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE PROTEASOME_BETA_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEASOME_BETA_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011732 RatGTEx
Superfamily-SCOP SSF56235 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8L2R849 ENTREZGENE, UniProtKB/TrEMBL
  A6JEU7_RAT UniProtKB/TrEMBL
  PSB7_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-13 Psmb7  proteasome 20S subunit beta 7  Psmb7  proteasome subunit beta 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-08-19 Psmb7  proteasome subunit beta 7  Psmb7  proteasome (prosome, macropain) subunit, beta type 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Psmb7  proteasome (prosome, macropain) subunit, beta type 7    proteasome (prosome, macropain) subunit, beta type, 7  Name updated 1299863 APPROVED
2002-08-07 Psmb7  proteasome (prosome, macropain) subunit, beta type, 7      Symbol and Name status set to provisional 70820 PROVISIONAL