Nfasc (neurofascin) - Rat Genome Database

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Gene: Nfasc (neurofascin) Rattus norvegicus
Analyze
Symbol: Nfasc
Name: neurofascin
RGD ID: 620911
Description: Enables protein domain specific binding activity. Involved in myelination; peripheral nervous system development; and protein localization to plasma membrane. Located in several cellular components, including Schwann cell microvillus; axon initial segment; and dendrite. Colocalizes with node of Ranvier. Orthologous to human NFASC (neurofascin); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; ammonium chloride.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: NF
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81346,549,369 - 46,735,989 (-)NCBIGRCr8
mRatBN7.21343,997,223 - 44,183,863 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1343,997,224 - 44,183,880 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1346,604,239 - 46,790,787 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01347,892,367 - 48,078,923 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01345,153,052 - 45,339,618 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01349,335,407 - 49,522,474 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1349,335,408 - 49,522,415 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01354,410,796 - 54,597,394 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41345,450,550 - 45,637,877 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11345,470,231 - 45,543,152 (-)NCBI
Celera1344,330,874 - 44,517,354 (-)NCBICelera
Cytogenetic Map13q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
axon  (IBA,IDA,IEA,ISO)
axon initial segment  (IDA,ISO)
dendrite  (IDA)
membrane  (IEA)
neuron projection  (IEA)
node of Ranvier  (IDA,ISO)
paranodal junction  (ISO)
paranode region of axon  (ISO)
plasma membrane  (IBA,IDA,IEA,ISO,TAS)
Schwann cell microvillus  (IDA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Neurofascin is a glial receptor for the paranodin/Caspr-contactin axonal complex at the axoglial junction. Charles P, etal., Curr Biol 2002 Feb 5;12(3):217-20.
2. Transient expression of neurofascin by oligodendrocytes at the onset of myelinogenesis: implications for mechanisms of axon-glial interaction. Collinson JM, etal., Glia 1998 May;23(1):11-23.
3. Ankyrin-binding proteins related to nervous system cell adhesion molecules: candidates to provide transmembrane and intercellular connections in adult brain. Davis JQ, etal., J Cell Biol 1993 Apr;121(1):121-33.
4. Molecular composition of the node of Ranvier: identification of ankyrin-binding cell adhesion molecules neurofascin (mucin+/third FNIII domain-) and NrCAM at nodal axon segments. Davis JQ, etal., J Cell Biol 1996 Dec;135(5):1355-67.
5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. MAP2 Defines a Pre-axonal Filtering Zone to Regulate KIF1- versus KIF5-Dependent Cargo Transport in Sensory Neurons. Gumy LF, etal., Neuron. 2017 Apr 19;94(2):347-362.e7. doi: 10.1016/j.neuron.2017.03.046.
7. A functional FERM domain binding motif in neurofascin. Gunn-Moore FJ, etal., Mol Cell Neurosci. 2006 Dec;33(4):441-6. Epub 2006 Oct 12.
8. Neurofascin assembles a specialized extracellular matrix at the axon initial segment. Hedstrom KL, etal., J Cell Biol. 2007 Aug 27;178(5):875-86. doi: 10.1083/jcb.200705119. Epub 2007 Aug 20.
9. Ankyrin-G coordinates assembly of the spectrin-based membrane skeleton, voltage-gated sodium channels, and L1 CAMs at Purkinje neuron initial segments. Jenkins SM and Bennett V, J Cell Biol. 2001 Nov 26;155(5):739-46. Epub 2001 Nov 26.
10. The neural cell recognition molecule neurofascin interacts with syntenin-1 but not with syntenin-2, both of which reveal self-associating activity. Koroll M, etal., J Biol Chem 2001 Apr 6;276(14):10646-54.
11. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
12. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
13. A common ankyrin-G-based mechanism retains KCNQ and NaV channels at electrically active domains of the axon. Pan Z, etal., J Neurosci. 2006 Mar 8;26(10):2599-613.
14. Sodium channel beta1 and beta3 subunits associate with neurofascin through their extracellular immunoglobulin-like domain. Ratcliffe CF, etal., J Cell Biol. 2001 Jul 23;154(2):427-34.
15. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
16. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
17. Early events in node of Ranvier formation during myelination and remyelination in the PNS. Schafer DP, etal., Neuron Glia Biol. 2006 May;2(2):69-79.
18. Acetylated tau destabilizes the cytoskeleton in the axon initial segment and is mislocalized to the somatodendritic compartment. Sohn PD, etal., Mol Neurodegener. 2016 Jun 29;11(1):47. doi: 10.1186/s13024-016-0109-0.
19. An oligodendrocyte cell adhesion molecule at the site of assembly of the paranodal axo-glial junction. Tait S, etal., J Cell Biol 2000 Aug 7;150(3):657-66.
20. Doublecortin (DCX) mediates endocytosis of neurofascin independently of microtubule binding. Yap CC, etal., J Neurosci. 2012 May 30;32(22):7439-53. doi: 10.1523/JNEUROSCI.5318-11.2012.
Additional References at PubMed
PMID:7961622   PMID:8889548   PMID:9151675   PMID:12223548   PMID:12975355   PMID:15479642   PMID:15691718   PMID:15797713   PMID:16039564   PMID:16337912   PMID:16566914   PMID:16701205  
PMID:16723544   PMID:17234591   PMID:17634366   PMID:17846150   PMID:17936266   PMID:18048693   PMID:19185024   PMID:19666467   PMID:20188654   PMID:20371806   PMID:21423176   PMID:21576239  
PMID:21700703   PMID:23376485   PMID:23971736   PMID:25511445   PMID:25653379   PMID:26511327   PMID:26671463   PMID:27583434   PMID:29404957   PMID:29476059   PMID:30850329  


Genomics

Comparative Map Data
Nfasc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81346,549,369 - 46,735,989 (-)NCBIGRCr8
mRatBN7.21343,997,223 - 44,183,863 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1343,997,224 - 44,183,880 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1346,604,239 - 46,790,787 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01347,892,367 - 48,078,923 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01345,153,052 - 45,339,618 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01349,335,407 - 49,522,474 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1349,335,408 - 49,522,415 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01354,410,796 - 54,597,394 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41345,450,550 - 45,637,877 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11345,470,231 - 45,543,152 (-)NCBI
Celera1344,330,874 - 44,517,354 (-)NCBICelera
Cytogenetic Map13q13NCBI
NFASC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381204,828,652 - 205,022,822 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1204,828,651 - 205,022,822 (+)EnsemblGRCh38hg38GRCh38
GRCh371204,797,780 - 204,991,950 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361203,064,446 - 203,258,572 (+)NCBINCBI36Build 36hg18NCBI36
Build 341201,529,438 - 201,723,621NCBI
Celera1177,932,899 - 178,127,015 (+)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1175,963,008 - 176,157,672 (+)NCBIHuRef
CHM1_11206,221,207 - 206,415,296 (+)NCBICHM1_1
T2T-CHM13v2.01204,093,027 - 204,287,188 (+)NCBIT2T-CHM13v2.0
Nfasc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391132,492,428 - 132,669,567 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1132,492,428 - 132,669,535 (-)EnsemblGRCm39 Ensembl
GRCm381132,564,690 - 132,741,848 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1132,564,690 - 132,741,797 (-)EnsemblGRCm38mm10GRCm38
MGSCv371134,461,267 - 134,638,374 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361134,397,532 - 134,569,311 (-)NCBIMGSCv36mm8
Celera1135,173,259 - 135,350,595 (-)NCBICelera
Cytogenetic Map1E4NCBI
cM Map157.42NCBI
Nfasc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540640,743,872 - 40,808,962 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540640,632,971 - 40,814,930 (+)NCBIChiLan1.0ChiLan1.0
NFASC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2144,353,873 - 44,548,361 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1144,319,117 - 44,513,623 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01180,430,523 - 180,624,953 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11184,760,032 - 184,911,633 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1184,759,115 - 184,905,467 (+)Ensemblpanpan1.1panPan2
NFASC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1381,367,128 - 1,546,909 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl381,366,251 - 1,543,630 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha381,461,694 - 1,641,383 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0381,364,188 - 1,541,272 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl381,364,084 - 1,543,725 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1381,360,848 - 1,540,002 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0381,751,583 - 1,931,202 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0381,951,355 - 2,128,798 (+)NCBIUU_Cfam_GSD_1.0
Nfasc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934470,105,531 - 70,244,171 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365577,350,114 - 7,437,722 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365577,345,813 - 7,437,654 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NFASC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl965,502,259 - 65,713,518 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1965,502,565 - 65,715,612 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2971,839,754 - 71,915,485 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NFASC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12524,315,877 - 24,516,524 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2524,321,574 - 24,474,635 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605525,072,883 - 25,274,060 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nfasc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248076,103,524 - 6,226,583 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248076,097,507 - 6,260,880 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nfasc
778 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2664
Count of miRNA genes:335
Interacting mature miRNAs:467
Transcripts:ENSRNOT00000044972, ENSRNOT00000051512, ENSRNOT00000060871
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
61339Bp24Blood pressure QTL 240.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13599466844807491Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)13931346554313465Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)13931346554313465Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
1300163Cardf1Cardiac cell morphology QTL 14.18aorta morphology trait (VT:0000272)artery lesion measurement (CMO:0000975)131192944945417941Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131192944946193066Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131491565559915655Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131515872260158722Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131769443653050594Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132230187567301875Rat
70170Eae14Experimental allergic encephalomyelitis QTL 140.0024nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)132320344868203448Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132369296968692969Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132369296968692969Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
2301962Cm72Cardiac mass QTL 724.12heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)133124133158363171Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133228447177284471Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133453521879535218Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133726209282262092Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133741558480753406Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133741558482415584Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)133843340883433408Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133975454484754544Rat
2303032Bp328Blood pressure QTL 328arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134118402245417941Rat
4145117Mcs27Mammary carcinoma susceptibility QTL 270.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)134343790447841255Rat
6893344Cm79Cardiac mass QTL 791.50.04heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)134372077062022792Rat

Markers in Region
D13Rat105  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21344,139,595 - 44,139,796 (+)MAPPERmRatBN7.2
Rnor_6.01349,478,067 - 49,478,267NCBIRnor6.0
Rnor_5.01354,552,997 - 54,553,197UniSTSRnor5.0
RGSC_v3.41345,592,985 - 45,593,186RGDRGSC3.4
RGSC_v3.41345,592,986 - 45,593,186UniSTSRGSC3.4
RGSC_v3.11345,607,028 - 45,607,229RGD
Celera1344,473,240 - 44,473,440UniSTS
FHH x ACI Map1318.27RGD
FHH x ACI Map1318.27UniSTS
Cytogenetic Map13q13UniSTS
RH132614  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21343,997,321 - 43,997,508 (+)MAPPERmRatBN7.2
Rnor_6.01349,335,506 - 49,335,692NCBIRnor6.0
Rnor_5.01354,410,895 - 54,411,081UniSTSRnor5.0
RGSC_v3.41345,450,649 - 45,450,835UniSTSRGSC3.4
Celera1344,330,973 - 44,331,159UniSTS
RH 3.4 Map13113.4UniSTS
Cytogenetic Map13q13UniSTS
RH144666  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21344,001,867 - 44,002,030 (+)MAPPERmRatBN7.2
Rnor_6.01349,340,052 - 49,340,214NCBIRnor6.0
Rnor_5.01354,415,441 - 54,415,603UniSTSRnor5.0
RGSC_v3.41345,455,195 - 45,455,357UniSTSRGSC3.4
Celera1344,335,519 - 44,335,681UniSTS
RH 3.4 Map13199.5UniSTS
Cytogenetic Map13q13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 74
Low 3 7 12 2 18 2 8 11 2 32 4 8
Below cutoff 28 23 17 1 17 28 9 7

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001160313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001160314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001160315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_053909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC105703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC134289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY061639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF410020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L11002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U81035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U81036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000044972   ⟹   ENSRNOP00000044067
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1343,997,224 - 44,149,036 (-)Ensembl
Rnor_6.0 Ensembl1349,335,408 - 49,487,892 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000051512   ⟹   ENSRNOP00000049964
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1343,997,224 - 44,183,811 (-)Ensembl
Rnor_6.0 Ensembl1349,335,408 - 49,522,415 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000060871   ⟹   ENSRNOP00000057594
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1343,997,224 - 44,183,880 (-)Ensembl
Rnor_6.0 Ensembl1349,335,408 - 49,522,415 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000103161   ⟹   ENSRNOP00000095471
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1343,997,224 - 44,183,880 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000110535   ⟹   ENSRNOP00000091013
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1343,997,224 - 44,149,036 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000110633   ⟹   ENSRNOP00000089830
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1344,032,405 - 44,183,811 (-)Ensembl
RefSeq Acc Id: NM_001160313   ⟹   NP_001153785
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81346,549,369 - 46,627,848 (-)NCBI
mRatBN7.21343,997,223 - 44,075,710 (-)NCBI
Rnor_6.01349,335,407 - 49,413,885 (-)NCBI
Rnor_5.01354,410,796 - 54,597,394 (-)NCBI
RGSC_v3.41345,450,550 - 45,637,877 (-)RGD
Celera1344,330,874 - 44,409,363 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001160314   ⟹   NP_001153786
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81346,549,369 - 46,735,933 (-)NCBI
mRatBN7.21343,997,223 - 44,183,811 (-)NCBI
Rnor_6.01349,335,407 - 49,522,415 (-)NCBI
Rnor_5.01354,410,796 - 54,597,394 (-)NCBI
RGSC_v3.41345,450,550 - 45,637,877 (-)RGD
Celera1344,330,874 - 44,517,354 (-)RGD
Sequence:
RefSeq Acc Id: NM_001160315   ⟹   NP_001153787
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81346,549,369 - 46,701,164 (-)NCBI
mRatBN7.21343,997,223 - 44,149,036 (-)NCBI
Rnor_6.01349,335,407 - 49,487,892 (-)NCBI
Rnor_5.01354,410,796 - 54,597,394 (-)NCBI
RGSC_v3.41345,450,550 - 45,637,877 (-)RGD
Celera1344,330,874 - 44,482,669 (-)NCBI
Sequence:
RefSeq Acc Id: NM_053909   ⟹   NP_446361
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81346,549,369 - 46,735,933 (-)NCBI
mRatBN7.21343,997,223 - 44,183,811 (-)NCBI
Rnor_6.01349,335,407 - 49,522,415 (-)NCBI
Rnor_5.01354,410,796 - 54,597,394 (-)NCBI
RGSC_v3.41345,450,550 - 45,637,877 (-)RGD
Celera1344,330,874 - 44,517,354 (-)RGD
Sequence:
RefSeq Acc Id: XM_006249727   ⟹   XP_006249789
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81346,549,369 - 46,735,989 (-)NCBI
mRatBN7.21343,997,223 - 44,183,863 (-)NCBI
Rnor_6.01349,335,407 - 49,522,474 (-)NCBI
Rnor_5.01354,410,796 - 54,597,394 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598641   ⟹   XP_017454130
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81346,549,369 - 46,735,989 (-)NCBI
mRatBN7.21343,997,223 - 44,183,863 (-)NCBI
Rnor_6.01349,335,407 - 49,522,473 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598645   ⟹   XP_017454134
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81346,549,369 - 46,735,989 (-)NCBI
mRatBN7.21343,997,223 - 44,183,863 (-)NCBI
Rnor_6.01349,335,407 - 49,522,472 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598647   ⟹   XP_017454136
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81346,549,369 - 46,735,989 (-)NCBI
mRatBN7.21343,997,223 - 44,183,863 (-)NCBI
Rnor_6.01349,335,407 - 49,522,471 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598648   ⟹   XP_017454137
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81346,549,369 - 46,735,989 (-)NCBI
mRatBN7.21343,997,223 - 44,183,863 (-)NCBI
Rnor_6.01349,335,407 - 49,522,472 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598649   ⟹   XP_017454138
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81346,549,369 - 46,735,989 (-)NCBI
mRatBN7.21343,997,223 - 44,183,863 (-)NCBI
Rnor_6.01349,335,407 - 49,522,471 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598650   ⟹   XP_017454139
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81346,549,369 - 46,735,989 (-)NCBI
mRatBN7.21343,997,223 - 44,183,863 (-)NCBI
Rnor_6.01349,335,407 - 49,522,470 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039090275   ⟹   XP_038946203
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81346,549,369 - 46,735,989 (-)NCBI
mRatBN7.21343,997,223 - 44,183,863 (-)NCBI
RefSeq Acc Id: XM_039090280   ⟹   XP_038946208
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81346,549,369 - 46,735,989 (-)NCBI
mRatBN7.21343,997,223 - 44,183,863 (-)NCBI
RefSeq Acc Id: XM_039090281   ⟹   XP_038946209
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81346,581,318 - 46,735,989 (-)NCBI
mRatBN7.21344,029,179 - 44,183,863 (-)NCBI
RefSeq Acc Id: XM_063271964   ⟹   XP_063128034
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81346,549,369 - 46,735,989 (-)NCBI
RefSeq Acc Id: XM_063271965   ⟹   XP_063128035
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81346,549,369 - 46,735,989 (-)NCBI
RefSeq Acc Id: XM_063271966   ⟹   XP_063128036
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81346,549,369 - 46,735,989 (-)NCBI
RefSeq Acc Id: XM_063271967   ⟹   XP_063128037
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81346,549,369 - 46,735,989 (-)NCBI
RefSeq Acc Id: XM_063271968   ⟹   XP_063128038
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81346,549,369 - 46,735,972 (-)NCBI
RefSeq Acc Id: XM_063271969   ⟹   XP_063128039
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81346,549,369 - 46,701,216 (-)NCBI
RefSeq Acc Id: XM_063271971   ⟹   XP_063128041
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81346,549,369 - 46,735,989 (-)NCBI
RefSeq Acc Id: XM_063271972   ⟹   XP_063128042
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81346,549,369 - 46,735,989 (-)NCBI
RefSeq Acc Id: XM_063271973   ⟹   XP_063128043
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81346,549,369 - 46,735,989 (-)NCBI
RefSeq Acc Id: XM_063271974   ⟹   XP_063128044
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81346,549,369 - 46,735,989 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001153785 (Get FASTA)   NCBI Sequence Viewer  
  NP_001153786 (Get FASTA)   NCBI Sequence Viewer  
  NP_001153787 (Get FASTA)   NCBI Sequence Viewer  
  NP_446361 (Get FASTA)   NCBI Sequence Viewer  
  XP_006249789 (Get FASTA)   NCBI Sequence Viewer  
  XP_017454130 (Get FASTA)   NCBI Sequence Viewer  
  XP_017454134 (Get FASTA)   NCBI Sequence Viewer  
  XP_017454136 (Get FASTA)   NCBI Sequence Viewer  
  XP_017454137 (Get FASTA)   NCBI Sequence Viewer  
  XP_017454138 (Get FASTA)   NCBI Sequence Viewer  
  XP_017454139 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946203 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946208 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946209 (Get FASTA)   NCBI Sequence Viewer  
  XP_063128034 (Get FASTA)   NCBI Sequence Viewer  
  XP_063128035 (Get FASTA)   NCBI Sequence Viewer  
  XP_063128036 (Get FASTA)   NCBI Sequence Viewer  
  XP_063128037 (Get FASTA)   NCBI Sequence Viewer  
  XP_063128038 (Get FASTA)   NCBI Sequence Viewer  
  XP_063128039 (Get FASTA)   NCBI Sequence Viewer  
  XP_063128041 (Get FASTA)   NCBI Sequence Viewer  
  XP_063128042 (Get FASTA)   NCBI Sequence Viewer  
  XP_063128043 (Get FASTA)   NCBI Sequence Viewer  
  XP_063128044 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB47753 (Get FASTA)   NCBI Sequence Viewer  
  AAB47754 (Get FASTA)   NCBI Sequence Viewer  
  AAL27854 (Get FASTA)   NCBI Sequence Viewer  
  EDM09785 (Get FASTA)   NCBI Sequence Viewer  
  EDM09786 (Get FASTA)   NCBI Sequence Viewer  
  EDM09787 (Get FASTA)   NCBI Sequence Viewer  
  EDM09788 (Get FASTA)   NCBI Sequence Viewer  
  EDM09789 (Get FASTA)   NCBI Sequence Viewer  
  EDM09790 (Get FASTA)   NCBI Sequence Viewer  
  EDM09791 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000044067.6
  ENSRNOP00000049964
  ENSRNOP00000049964.5
  ENSRNOP00000057594
  ENSRNOP00000057594.4
  ENSRNOP00000089830.1
  ENSRNOP00000091013
  ENSRNOP00000091013.1
  ENSRNOP00000095471.1
GenBank Protein P97685 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_446361   ⟸   NM_053909
- Peptide Label: isoform 3 precursor
- UniProtKB: D3ZNW5 (UniProtKB/TrEMBL),   A6IC60 (UniProtKB/TrEMBL),   D3ZW56 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001153786   ⟸   NM_001160314
- Peptide Label: isoform 1 precursor
- UniProtKB: P97684 (UniProtKB/Swiss-Prot),   Q91Z60 (UniProtKB/Swiss-Prot),   P97685 (UniProtKB/Swiss-Prot),   A6IC58 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001153787   ⟸   NM_001160315
- Peptide Label: isoform 4 precursor
- UniProtKB: D3ZW56 (UniProtKB/TrEMBL),   A0A8I6GIP5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001153785   ⟸   NM_001160313
- Peptide Label: isoform 2 precursor
- UniProtKB: A6IC61 (UniProtKB/TrEMBL),   D3ZW56 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249789   ⟸   XM_006249727
- Peptide Label: isoform X1
- UniProtKB: A0A8L2QSS8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454130   ⟸   XM_017598641
- Peptide Label: isoform X5
- UniProtKB: A0A8L2QSS8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454137   ⟸   XM_017598648
- Peptide Label: isoform X12
- UniProtKB: A6IC57 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454134   ⟸   XM_017598645
- Peptide Label: isoform X10
- UniProtKB: A6IC57 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454138   ⟸   XM_017598649
- Peptide Label: isoform X13
- UniProtKB: A6IC56 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454136   ⟸   XM_017598647
- Peptide Label: isoform X11
- UniProtKB: A6IC56 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454139   ⟸   XM_017598650
- Peptide Label: isoform X14
- UniProtKB: D3ZW56 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000057594   ⟸   ENSRNOT00000060871
RefSeq Acc Id: ENSRNOP00000049964   ⟸   ENSRNOT00000051512
RefSeq Acc Id: ENSRNOP00000044067   ⟸   ENSRNOT00000044972
RefSeq Acc Id: XP_038946208   ⟸   XM_039090280
- Peptide Label: isoform X17
- UniProtKB: A0A8I6AN44 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038946203   ⟸   XM_039090275
- Peptide Label: isoform X2
- UniProtKB: A6IC59 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038946209   ⟸   XM_039090281
- Peptide Label: isoform X19
- UniProtKB: A0A8I6GIE9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000091013   ⟸   ENSRNOT00000110535
RefSeq Acc Id: ENSRNOP00000095471   ⟸   ENSRNOT00000103161
RefSeq Acc Id: ENSRNOP00000089830   ⟸   ENSRNOT00000110633
RefSeq Acc Id: XP_063128044   ⟸   XM_063271974
- Peptide Label: isoform X18
RefSeq Acc Id: XP_063128036   ⟸   XM_063271966
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063128034   ⟸   XM_063271964
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063128043   ⟸   XM_063271973
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063128035   ⟸   XM_063271965
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063128042   ⟸   XM_063271972
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063128041   ⟸   XM_063271971
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063128037   ⟸   XM_063271967
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063128038   ⟸   XM_063271968
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063128039   ⟸   XM_063271969
- Peptide Label: isoform X8
Protein Domains
Fibronectin type-III   Ig-like   Ig-like C2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P97685-F1-model_v2 AlphaFold P97685 1-1240 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698815
Promoter ID:EPDNEW_R9340
Type:single initiation site
Name:Nfasc_1
Description:neurofascin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01349,522,428 - 49,522,488EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620911 AgrOrtholog
BioCyc Gene G2FUF-18310 BioCyc
Ensembl Genes ENSRNOG00000030515 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000044972.7 UniProtKB/TrEMBL
  ENSRNOT00000051512 ENTREZGENE
  ENSRNOT00000051512.6 UniProtKB/TrEMBL
  ENSRNOT00000060871 ENTREZGENE
  ENSRNOT00000060871.5 UniProtKB/TrEMBL
  ENSRNOT00000103161.1 UniProtKB/TrEMBL
  ENSRNOT00000110535 ENTREZGENE
  ENSRNOT00000110535.1 UniProtKB/TrEMBL
  ENSRNOT00000110633.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_I-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Immunoglobulin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neurofascin/L1/NrCAM_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NFASC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:116690 UniProtKB/Swiss-Prot
NCBI Gene 116690 ENTREZGENE
PANTHER NEUROFASCIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN SIDEKICK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Bravo_FIGEY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  fn3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  I-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00047 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nfasc PhenoGen
PROSITE FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000030515 RatGTEx
SMART FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IGc2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49265 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6AN44 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GIE9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GIP5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QSS8 ENTREZGENE, UniProtKB/TrEMBL
  A6IC55_RAT UniProtKB/TrEMBL
  A6IC56 ENTREZGENE, UniProtKB/TrEMBL
  A6IC57 ENTREZGENE, UniProtKB/TrEMBL
  A6IC58 ENTREZGENE, UniProtKB/TrEMBL
  A6IC59 ENTREZGENE, UniProtKB/TrEMBL
  A6IC60 ENTREZGENE, UniProtKB/TrEMBL
  A6IC61 ENTREZGENE, UniProtKB/TrEMBL
  D3ZNW5 ENTREZGENE, UniProtKB/TrEMBL
  D3ZW56 ENTREZGENE, UniProtKB/TrEMBL
  NFASC_RAT UniProtKB/Swiss-Prot
  P97684 ENTREZGENE
  P97685 ENTREZGENE
  Q91Z60 ENTREZGENE
UniProt Secondary P97684 UniProtKB/Swiss-Prot
  Q91Z60 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-02-26 Nfasc  neurofascin      Symbol and Name status set to approved 625702 APPROVED
2002-08-07 Nfasc  neurofascin      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression up-regulated in oligodendrocytes at the onset of myelinogenesis 633391