Slc33a1 (solute carrier family 33 member 1)

Gene: Slc33a1 (solute carrier family 33 member 1) Rattus norvegicus

Analyze

Symbol:

Slc33a1

Name:

solute carrier family 33 member 1

RGD ID:

620653

Description:

Predicted to enable acetyl-CoA transmembrane transporter activity and protein homodimerization activity. Predicted to be involved in acetyl-CoA transmembrane transport. Predicted to be located in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 42. Orthologous to human SLC33A1 (solute carrier family 33 member 1); PARTICIPATES IN ganglioside metabolic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; acetamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Acatn; acetyl-CoA transporter; acetyl-CoA transporter 1; acetyl-coenzyme A transporter 1; acetyl-coenzyme A transporter 1-like; AT-1; solute carrier family 33 (acetyl-CoA transporter), member 1

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLC33A1 (solute carrier family 33 member 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Slc33a1 (solute carrier family 33 (acetyl-CoA transporter), member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Slc33a1 (solute carrier family 33 member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SLC33A1 (solute carrier family 33 member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SLC33A1 (solute carrier family 33 member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Slc33a1 (solute carrier family 33 member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SLC33A1 (solute carrier family 33 member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SLC33A1 (solute carrier family 33 member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Slc33a1 (solute carrier family 33 member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	MTUS1 (microtubule associated scaffold protein 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	SLC33A1 (solute carrier family 33 member 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Slc33a1 (solute carrier family 33 (acetyl-CoA transporter), member 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	slc33a1 (solute carrier family 33 member 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	T26C5.3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG9706	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	YBR219C	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	YBR220C	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	slc33a1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	150,565,327 - 150,587,700 (-)	NCBI		GRCr8
mRatBN7.2	2	148,415,660 - 148,438,182 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	148,415,666 - 148,437,758 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	155,144,334 - 155,166,535 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	153,193,799 - 153,215,999 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	147,826,472 - 147,848,673 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	154,520,170 - 154,542,981 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	154,520,087 - 154,542,919 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	173,904,052 - 173,926,434 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	153,768,885 - 153,791,102 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	153,718,848 - 153,741,065 (-)	NCBI
Celera	2	142,691,385 - 142,713,443 (-)	NCBI		Celera
Cytogenetic Map	2	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cataract (ISO)

Congenital Cataracts, Hearing Loss, and Neurodegeneration (ISO)

Developmental Disabilities (ISO)

genetic disease (ISO)

Hearing Loss (ISO)

hereditary spastic paraplegia (ISO)

hereditary spastic paraplegia 10 (ISO)

hereditary spastic paraplegia 42 (ISO)

paraplegia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4-dinitrotoluene (EXP)

acetamide (EXP)

aconitine (EXP)

aflatoxin B1 (ISO)

ammonium chloride (EXP)

aristolochic acid A (ISO)

avobenzone (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

carbon nanotube (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

endosulfan (EXP)

flutamide (EXP)

FR900359 (ISO)

gentamycin (EXP)

ivermectin (ISO)

methapyrilene (EXP)

nefazodone (EXP)

nimesulide (EXP)

paracetamol (ISO)

perfluorooctanoic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

quercetin (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

Soman (EXP)

tetrachloroethene (ISO)

thioacetamide (EXP)

trichloroethene (EXP)

triptonide (ISO)

tungsten (ISO)

tunicamycin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

acetyl-CoA transmembrane transport (ISO,ISS)

Cellular Component

endoplasmic reticulum membrane (ISO,ISS)

Molecular Function

acetyl-CoA transmembrane transporter activity (ISO,ISS,NAS)

protein binding (ISO)

protein homodimerization activity (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

ganglioside metabolic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	cDNA cloning of putative rat acetyl-CoA transporter and its expression pattern in brain.	Bora RS, etal., Cytogenet Cell Genet 2000;89(3-4):204-8.
2.	Cloning and characterization of a putative mouse acetyl-CoA transporter cDNA.	Bora RS, etal., Gene 1999 Oct 1;238(2):455-62.
3.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
5.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
6.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
7.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
8.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
9.	GOA pipeline	RGD automated data pipeline
10.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
12.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334	PMID:19946888	PMID:25402622

Genomics

Comparative Map Data

Slc33a1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	150,565,327 - 150,587,700 (-)	NCBI		GRCr8
mRatBN7.2	2	148,415,660 - 148,438,182 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	148,415,666 - 148,437,758 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	155,144,334 - 155,166,535 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	153,193,799 - 153,215,999 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	147,826,472 - 147,848,673 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	154,520,170 - 154,542,981 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	154,520,087 - 154,542,919 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	173,904,052 - 173,926,434 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	153,768,885 - 153,791,102 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	153,718,848 - 153,741,065 (-)	NCBI
Celera	2	142,691,385 - 142,713,443 (-)	NCBI		Celera
Cytogenetic Map	2	q31	NCBI

SLC33A1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	155,821,024 - 155,854,427 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	155,821,024 - 155,854,456 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	155,538,813 - 155,572,216 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	157,028,065 - 157,054,861 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	157,028,072 - 157,054,869	NCBI
Celera	3	153,965,573 - 153,993,678 (-)	NCBI		Celera
Cytogenetic Map	3	q25.31	NCBI
HuRef	3	152,938,818 - 152,966,761 (-)	NCBI		HuRef
CHM1_1	3	155,507,626 - 155,535,526 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	158,595,660 - 158,629,057 (-)	NCBI		T2T-CHM13v2.0

Slc33a1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	63,849,744 - 63,872,154 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	63,840,928 - 63,872,189 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	63,942,323 - 63,964,733 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	63,933,507 - 63,964,768 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	63,746,258 - 63,768,655 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	64,030,265 - 64,052,662 (-)	NCBI		MGSCv36	mm8
Celera	3	63,614,271 - 63,636,637 (-)	NCBI		Celera
Cytogenetic Map	3	E1	NCBI
cM Map	3	30.08	NCBI

Slc33a1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955448	6,885,153 - 6,905,631 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955448	6,885,153 - 6,905,641 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLC33A1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	153,741,581 - 153,769,681 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	153,746,314 - 153,774,411 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	152,882,563 - 152,910,434 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	160,933,257 - 160,961,723 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	160,933,258 - 160,961,723 (-)	Ensembl	panpan1.1		panPan2

SLC33A1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	49,522,325 - 49,548,004 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	49,523,852 - 49,547,904 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	49,398,410 - 49,424,322 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	50,157,394 - 50,182,415 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	50,154,335 - 50,182,497 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	49,742,667 - 49,767,691 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	49,791,848 - 49,816,795 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	50,077,444 - 50,104,253 (-)	NCBI		UU_Cfam_GSD_1.0

Slc33a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	86,672,733 - 86,694,733 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936519	3,036,106 - 3,061,271 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936519	3,038,895 - 3,061,215 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC33A1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	95,658,530 - 95,724,156 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	95,690,453 - 95,724,239 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	103,717,661 - 103,747,366 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC33A1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	34,907,146 - 34,932,928 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	34,907,091 - 34,931,262 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	7,541,900 - 7,567,809 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc33a1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	33,420,389 - 33,443,144 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624730	33,424,654 - 33,443,249 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Slc33a1
80 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	33
Count of miRNA genes:	30
Interacting mature miRNAs:	33
Transcripts:	ENSRNOT00000013392
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	157142209	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	157142209	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	25413652	157142078	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	25413652	157142078	Rat
2293835	Kiddil5	Kidney dilation QTL 5	3.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42804607	157142209	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42804607	182042367	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	43154682	202446871	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	43154682	202446871	Rat
2293671	Bss44	Bone structure and strength QTL 44	10.97	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	2	43162366	148478373	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	43171017	184114403	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	46123260	202447032	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	56043031	202447032	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118275	202447032	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118463	226797303	Rat
1558653	Prcr1	Prostate cancer resistance QTL 1	5		prostate integrity trait (VT:0010571)	area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)	2	72532993	157142209	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	74786664	206665859	Rat
631198	Cm22	Cardiac mass QTL 22	4.3	0.0008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	76539322	150540526	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	76539322	202447032	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	78665619	219826953	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	78665619	249053267	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	81689826	221035911	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	81754530	222436696	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	81754530	227146641	Rat
8662836	Vetf8	Vascular elastic tissue fragility QTL 8	0.66		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	104559726	149559726	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	112456140	212696837	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	112456140	212696837	Rat
1354594	Despr10	Despair related QTL 10		0.00000249	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	2	114654253	159654253	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	114837527	185876470	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	114837527	185876470	Rat
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	114837527	211674221	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	114837675	212549332	Rat
5135226	Leukc2	Leukocyte quantity QTL 2			eosinophil quantity (VT:0002602)	blood eosinophil count (CMO:0000033)	2	118111229	149559726	Rat
1582257	Gluco21	Glucose level QTL 21	3.1	0.0035	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	118111229	157142209	Rat
738007	Anxrr7	Anxiety related response QTL 7	4.4		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	118189491	163189491	Rat
1358360	Sradr2	Stress Responsive Adrenal Weight QTL 2	10.24		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	2	129164097	152195315	Rat
6907363	Bp357	Blood pressure QTL 357	4.1	0.002	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	129540907	174540907	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	133914684	202447032	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	2	135552573	202446871	Rat
1298076	Bp166	Blood pressure QTL 166		0.0009	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	136445150	202447032	Rat
1581502	Esta3	Estrogen-induced thymic atrophy QTL 3			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	136916935	189599348	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	2	136916935	213594495	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	141194931	223265385	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	141194931	223265385	Rat
71113	Cari2	Carrageenan-induced inflammation QTL 2	2.7	0.009	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	2	141596551	202447032	Rat
1549828	Bp258	Blood pressure QTL 258		0.03	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	142323368	150650069	Rat
724568	Uae13	Urinary albumin excretion QTL 13	4.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	2	143157029	210020885	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	143657411	190602963	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	143657411	190602963	Rat
6903312	Bw112	Body weight QTL 112	3.2	0.0013	body mass (VT:0001259)	body weight (CMO:0000012)	2	143657569	184114274	Rat
61401	Niddm2	Non-insulin dependent diabetes mellitus QTL 2	4.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	144599348	189599348	Rat
631520	Bp73	Blood pressure QTL 73		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	147686913	168355276	Rat
1598833	Bp295	Blood pressure QTL 295	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	147798556	192798556	Rat

Markers in Region

AI788741

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	148,415,710 - 148,415,841 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	154,520,221 - 154,520,351	NCBI	Rnor6.0
Rnor_5.0	2	173,904,098 - 173,904,228	UniSTS	Rnor5.0
RGSC_v3.4	2	153,745,706 - 153,745,836	UniSTS	RGSC3.4
RGSC_v3.4	2	153,768,931 - 153,769,061	UniSTS	RGSC3.4
Celera	2	142,691,431 - 142,691,561	UniSTS
Cytogenetic Map	2	q31	UniSTS

RH128989

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	148,415,698 - 148,415,848 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	154,520,209 - 154,520,358	NCBI	Rnor6.0
Rnor_5.0	2	173,904,086 - 173,904,235	UniSTS	Rnor5.0
RGSC_v3.4	2	153,768,919 - 153,769,068	UniSTS	RGSC3.4
RGSC_v3.4	2	153,745,694 - 153,745,843	UniSTS	RGSC3.4
Celera	2	142,691,419 - 142,691,568	UniSTS
RH 3.4 Map	2	934.1	UniSTS
Cytogenetic Map	2	q31	UniSTS

AI315656

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	148,415,701 - 148,415,841 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	154,520,212 - 154,520,351	NCBI	Rnor6.0
Rnor_5.0	2	173,904,089 - 173,904,228	UniSTS	Rnor5.0
RGSC_v3.4	2	153,745,697 - 153,745,836	UniSTS	RGSC3.4
RGSC_v3.4	2	153,768,922 - 153,769,061	UniSTS	RGSC3.4
Celera	2	142,691,422 - 142,691,561	UniSTS
Cytogenetic Map	2	q31	UniSTS

BF389636

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	148,427,724 - 148,427,845 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	154,532,522 - 154,532,642	NCBI	Rnor6.0
Rnor_5.0	2	173,916,399 - 173,916,519	UniSTS	Rnor5.0
RGSC_v3.4	2	153,781,073 - 153,781,193	UniSTS	RGSC3.4
Celera	2	142,703,449 - 142,703,569	UniSTS
RH 3.4 Map	2	948.7	UniSTS
Cytogenetic Map	2	q31	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	28	57	41	19	41			74	35	41	11
Low		15					8	11					8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_022252	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761058	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282448	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB039326	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC078832	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226735	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000013392 ⟹ ENSRNOP00000013392

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	148,415,666 - 148,437,758 (-)	Ensembl
Rnor_6.0 Ensembl	2	154,520,175 - 154,542,557 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000076880 ⟹ ENSRNOP00000068212

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	2	154,520,087 - 154,542,919 (-)	Ensembl

RefSeq Acc Id:

NM_022252 ⟹ NP_071588

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	150,565,327 - 150,587,416 (-)	NCBI
mRatBN7.2	2	148,415,665 - 148,437,758 (-)	NCBI
Rnor_6.0	2	154,520,175 - 154,542,557 (-)	NCBI
Rnor_5.0	2	173,904,052 - 173,926,434 (-)	NCBI
RGSC_v3.4	2	153,768,885 - 153,791,102 (-)	RGD
Celera	2	142,691,385 - 142,713,443 (-)	RGD

Sequence:

show sequence

CTGGGCCACCGGCCGGGGATCTGGCTCCCTGCTGCAAAACATCGACTAGTCTCTCCGCGTCCGC
CCTCCCGGCGTTGAACCACCGTGACCCTGGTTCAGAGAGGCTGTCTTGGACTTGGAACTAGACA
TATCCAGCTCAGGCCTCCACACACCGGGCTCTGCGTTGTCACTGATATGTCACCGACCATCTCC
CACAAGGACAACAGTCGGCAGCGGCGGTCAGGCATGTTCGGTCACGCTCTGGATATGAAGAGTG
GCCCCCTGCCACCGGGCGGCTGGGATGACAATCACCAAGACTCGGTGGGCGGGGAAGGGGACCG
GGAAGTTCTTCTTGGGGATGTCGGCCCTGGTGACTTCCCAAAAGCCAAGAGGAGCTATAGAGCC
GAACTAAGTAGCATTTTGTTACTACTCTTTCTTTACGTGCTTCAGGGCATTCCCTTAGGCCTGG
CGGGGAGCATACCCCTCATTTTGCAGAGCAAAAATGTTAGCTATACAGATCAAGCTTTCTTCAG
TTTTGTCTTCTGGCCATTCAGTCTTAAGCTGCTCTGGGCTCCCTTGGTTGATGCCGTCTACTTT
AAGAACTTCGGTCGTCGCAAGTCCTGGCTTGTCCCTACTCAGTATATACTAGGAATCTTCATGA
TTTATTTATCCACTCAAGTGGACCGTTTGCTTGGAAATATTGATGGCAGAACACCGGATGTAGT
TGCTCTCACTGTGACTTTCTTTTTGTTTGAATTCCTGGCCGCCACACAGGACATCGCTGTGGAC
GGTTGGGCATTAACTATGTTATCCCGGGAAAACGTGGGCTATGCTTCGACATGCAATTCTGTGG
GCCAAACAGCAGGCTACTTTTTGGGCAATGTTTTGTTTTTGGCTCTTGAATCTGCTGACTTTTG
TAACAAATATTTGCGGTTTCAGCCTCAACCCAGGGGAATCGTTACCCTTTCAGATTTTCTATTT
TTCTGGGGAACTGTATTTTTAATAACAACAACATTAGTAGCCCTTCTGAAAAAAGAGACCAGAG
AAGCGTCAGTAGTAAAAGAAGAGACACAAGGGATCACAGACACATACAAGCTGCTCTTCTCAAT
TATAAAAATGCCAGCAGTTCTGGCGTTTTGCCTTCTGATTCTAACTTCAAAGATTGGCTTTTCA
GCAGCAGATGCGGTGACAGGCCTGAAACTGGTAGAAGAGGGAGTGCCTAAGGAGCACCTGGCCT
TACTGGCTGTCCCAATGGTCCCCCTGCAGATAATCCTGCCCCTCCTCATCAGCAAGTACACGGC
AGGTCCCCAGCCTCTGAATATATTTTACAAAGCCATGCCCTACAGATTGTTGCTTGGATTAGAG
TACGCCCTCCTTGTTTGGTGGACTCCTAAAGTAGAGCATCAAGGAGGATTCCCTATATATTACT
ACATCATAGTGCTGCTGAGCTATGCCTTACATCAGGTCACTCTGTACAGCATGTATGTGTCAAT
AATGGCTTTCAATGCCAAGGTCAGTGATCCTCTTATTGGAGGAACATACATGACCCTTTTAAAT
ACTGTGTCCAATCTGGGAGGAAACTGGCCTTCTACAGTGGCGCTTTGGCTAGTGGATCCCCTCA
CAGTGAAGGAGTGTGTAGGAGCTTCAAACCAGAACTGTCGGACACCTGAGGCTATCGAACTTTG
CAAAAAGCTTGGCGGCTCGTGCGTTACAGCTCTGGATGGTTATTATGTGGAATCCATTGTCTGT
GTTCTCATTGGATTTGGTTGGTGGTTCTTTCTTGGTCCAAAATTTAAAAAGTTACAGGATGAAG
GACCGTCCTCATGGAAGTGCAAAAGGACCAACTGATGCCAACATTACTGGACATTCTAGAAGGT
TTATATATGATTTTGTCACAGGTGCATCAAGGCACACAGACAACTAATGAGGGGATCAAGTTTG
TGGTGTGTATGTGATTATACCTGAGTTGTACAAATAAAGATTTAATGTCAAAAAAAAAAAAAAA
AAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_008761058 ⟹ XP_008759280

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	150,565,327 - 150,587,700 (-)	NCBI
mRatBN7.2	2	148,415,660 - 148,438,182 (-)	NCBI
Rnor_6.0	2	154,520,170 - 154,542,981 (-)	NCBI

Sequence:

show sequence

GAACCCGGGTAGTTAATGCGCTCGGTCCTGGACGCTCGGTACGCTGGCGTTATTCCTCCCTCGG
GGTCAGAATCGAGGGAATTAATAGTTCCTAGCAAACTCTGTTTGCGGTCGCCGCCACCGGAGCT
TGTTCTGATTCGCTAGCTTCGTCGGGAGGAACCCATTTTGGCAGGGAACCACTTCCCGAAGCGC
GAGGCAGGAAGTTATCCTTTACCTTTGGTGTCTGCTGAGAGTACCCGCTGCAGTATCAGCGGAG
ATCTAGTGGCAGGTGGGCAGGCGGGCGTTCGAGACTTGCCGCAGTTACGAGCCAGACTCCATCG
CAGCGCCACGGCACGCTCCGCCACCCTCGAGCCCCGCGCGGCTGCACGGGGAGCTCTTCCCGGC
TCCCTGAAATCGCTCCTGTGGGCAGCGACCCAGGCTTCGCCTGGGCCACCGGCCGGGGATCTGG
CTCCCTGCTGCAAAACATCGACTAGTCTCTCCGCGTCCGCCCTCCCGGCGTTGAACCACCGTGA
CCCTGGTTCAGAGAGGCTGTCTTGGACTTGGAACTAGACATATCCAGCTCAGGCCTCCACACAC
CGGGCTCTGCGTTGTCACTGATATGTCACCGACCATCTCCCACAAGGACAACAGTCGGCAGCGG
CGGTCAGGCATGTTCGGTCACGCTCTGGATATGAAGAGTGGCCCCCTGCCACCGGGCGGCTGGG
ATGACAATCACCAAGACTCGGTGGGCGGGGAAGGGGACCGGGAAGTTCTTCTTGGGGATGTCGG
CCCTGGTGACTTCCCAAAAGCCAAGAGGAGCTATAGAGCCGAACTAAGTAGCATTTTGTTACTA
CTCTTTCTTTACGTGCTTCAGGGCATTCCCTTAGGCCTGGCGGGGAGCATACCCCTCATTTTGC
AGAGCAAAAATGTTAGCTATACAGATCAAGCTTTCTTCAGTTTTGTCTTCTGGCCATTCAGTCT
TAAGCTGCTCTGGGCTCCCTTGGTTGATGCCGTCTACTTTAAGAACTTCGGTCGTCGCAAGTCC
TGGCTTGTCCCTACTCAGTATATACTAGGAATCTTCATGATTTATTTATCCACTCAAGTGGACC
GTTTGCTTGGAAATATTGATGGCAGAACACCGGATGTAGTTGCTCTCACTGTGACTTTCTTTTT
GTTTGAATTCCTGGCCGCCACACAGGACATCGCTGTGGACGGTTGGGCATTAACTATGTTATCC
CGGGAAAACGTGGGCTATGCTTCGACATGCAATTCTGTGGGCCAAACAGCAGGCTACTTTTTGG
GCAATGTTTTGTTTTTGGCTCTTGAATCTGCTGACTTTTGTAACAAATATTTGCGGTTTCAGCC
TCAACCCAGGGGAATCGTTACCCTTTCAGATTTTCTATTTTTCTGGGGAACTGTATTTTTAATA
ACAACAACATTAGTAGCCCTTCTGAAAAAAGAGACCAGAGAAGCGTCAGTAGTAAAAGAAGAGA
CACAAGGGATCACAGACACATACAAGCTGCTCTTCTCAATTATAAAAATGCCAGCAGTTCTGGC
GTTTTGCCTTCTGATTCTAACTTCAAAGATTGGCTTTTCAGCAGCAGATGCGGTGACAGGCCTG
AAACTGGTAGAAGAGGGAGTGCCTAAGGAGCACCTGGCCTTACTGGCTGTCCCAATGGTCCCCC
TGCAGATAATCCTGCCCCTCCTCATCAGCAAGTACACGGCAGGTCCCCAGCCTCTGAATATATT
TTACAAAGCCATGCCCTACAGATTGTTGCTTGGATTAGAGTACGCCCTCCTTGTTTGGTGGACT
CCTAAAGTAGAGCATCAAGGAGGATTCCCTATATATTACTACATCATAGTGCTGCTGAGCTATG
CCTTACATCAGGTCACTCTGTACAGCATGTATGTGTCAATAATGGCTTTCAATGCCAAGGTCAG
TGATCCTCTTATTGGAGGAACATACATGACCCTTTTAAATACTGTGTCCAATCTGGGAGGAAAC
TGGCCTTCTACAGTGGCGCTTTGGCTAGTGGATCCCCTCACAGTGAAGGAGTGTGTAGGAGCTT
CAAACCAGAACTGTCGGACACCTGAGGCTATCGAACTTTGCAAAAAGCTTGGCGGCTCGTGCGT
TACAGCTCTGGATGGTTATTATGTGGAATCCATTGTCTGTGTTCTCATTGGATTTGGTTGGTGG
TTCTTTCTTGGTCCAAAATTTAAAAAGTTACAGGATGAAGGACCGTCCTCATGGAAGTGCAAAA
GGACCAACTGATGCCAACATTACTGGACATTCTAGAAGGTAACTGTAGCTTAGTTTTACTGAGA
AAGCTATGATAATCAGTGTGTAGGCTGTAAAATATCGTTTTAAGACATTTTTAATTTAAAATGC
CAAATAGTTGAAAACCACAGATTTCTTTGTATGTTTGATTATATTTTTCCTTGCCTTGTCAATG
TATTAAAATTTACTTAAGGCTAGGAAACAACCCTTTTGGTTGTATTACTTGATTTCTGTTAATT
TACTGACCAAAGCATATTTTAAGCTGCAGTGGAATAGCCATGGTGGTCACCATGCTGTCAAGTA
TTGCGTTAGTGCCTGCCATTGAGTTGTAGTTAATGTTTTGGTACAGTGTATCAAGTGTGGCCAA
GCTTACTATCCAGGTACTAACAAGCTCGTTTAACATTATTGGAAGTTAATTCTCACTTCGAATT
GTAAATTTGTAAAAATGTATGTGGAATTAGATGCAAAGAAAATGTAGACTACTAAAACTTTGAG
TTTTTCTGACTATAACCGTATTGTACAAATGAATCTGTTAAAAAATAACTATTTTAAATGTACT
TTTTTGCTTTTGTAAGCATGAAAGATTTATAAAGATTATCCAAACTATTTTTTTATAAAATGAG
AGCTATGGTTTTTAATTTATTGATTTCCCTGTCTCTCCCTCCCTTTTGGGGAAGCTATTTTGAT
TTCTTGTTAACTCTTGCCCTAGGTTTACATATGATTTTGTCACAGGTGCATCAAGGCACACAGA
CAACTAATGAGGGGATCAAGTTTGTGGTGTGTATGTGATTATACCTGAGTTGTACAAATAAAGA
TTTAATGTCATTTCA

hide sequence

RefSeq Acc Id:

XM_039103029 ⟹ XP_038958957

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	150,565,327 - 150,577,082 (-)	NCBI
mRatBN7.2	2	148,415,660 - 148,427,528 (-)	NCBI

RefSeq Acc Id:

XM_039103030 ⟹ XP_038958958

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	150,565,327 - 150,586,608 (-)	NCBI
mRatBN7.2	2	148,415,660 - 148,436,950 (-)	NCBI

RefSeq Acc Id:

XM_063282448 ⟹ XP_063138518

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	150,565,327 - 150,577,082 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_071588	(Get FASTA)	NCBI Sequence Viewer
	XP_008759280	(Get FASTA)	NCBI Sequence Viewer
	XP_038958957	(Get FASTA)	NCBI Sequence Viewer
	XP_038958958	(Get FASTA)	NCBI Sequence Viewer
	XP_063138518	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH78832	(Get FASTA)	NCBI Sequence Viewer
	BAA95446	(Get FASTA)	NCBI Sequence Viewer
	EDM14807	(Get FASTA)	NCBI Sequence Viewer
	EDM14808	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000013392
	ENSRNOP00000013392.3
	ENSRNOP00055025311
	ENSRNOP00060005824
	ENSRNOP00065038011
GenBank Protein	Q6AYY8	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_071588 ⟸ NM_022252

- UniProtKB:

Q9JM68 (UniProtKB/Swiss-Prot), Q6AYY8 (UniProtKB/Swiss-Prot), A6JVP5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSPTISHKDNSRQRRSGMFGHALDMKSGPLPPGGWDDNHQDSVGGEGDREVLLGDVGPGDFPKA
KRSYRAELSSILLLLFLYVLQGIPLGLAGSIPLILQSKNVSYTDQAFFSFVFWPFSLKLLWAPL
VDAVYFKNFGRRKSWLVPTQYILGIFMIYLSTQVDRLLGNIDGRTPDVVALTVTFFLFEFLAAT
QDIAVDGWALTMLSRENVGYASTCNSVGQTAGYFLGNVLFLALESADFCNKYLRFQPQPRGIVT
LSDFLFFWGTVFLITTTLVALLKKETREASVVKEETQGITDTYKLLFSIIKMPAVLAFCLLILT
SKIGFSAADAVTGLKLVEEGVPKEHLALLAVPMVPLQIILPLLISKYTAGPQPLNIFYKAMPYR
LLLGLEYALLVWWTPKVEHQGGFPIYYYIIVLLSYALHQVTLYSMYVSIMAFNAKVSDPLIGGT
YMTLLNTVSNLGGNWPSTVALWLVDPLTVKECVGASNQNCRTPEAIELCKKLGGSCVTALDGYY
VESIVCVLIGFGWWFFLGPKFKKLQDEGPSSWKCKRTN

hide sequence

RefSeq Acc Id:	XP_008759280 ⟸ XM_008761058
- Peptide Label:	isoform X1
- UniProtKB:	Q9JM68 (UniProtKB/Swiss-Prot), Q6AYY8 (UniProtKB/Swiss-Prot), A6JVP5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSPTISHKDNSRQRRSGMFGHALDMKSGPLPPGGWDDNHQDSVGGEGDREVLLGDVGPGDFPKA KRSYRAELSSILLLLFLYVLQGIPLGLAGSIPLILQSKNVSYTDQAFFSFVFWPFSLKLLWAPL VDAVYFKNFGRRKSWLVPTQYILGIFMIYLSTQVDRLLGNIDGRTPDVVALTVTFFLFEFLAAT QDIAVDGWALTMLSRENVGYASTCNSVGQTAGYFLGNVLFLALESADFCNKYLRFQPQPRGIVT LSDFLFFWGTVFLITTTLVALLKKETREASVVKEETQGITDTYKLLFSIIKMPAVLAFCLLILT SKIGFSAADAVTGLKLVEEGVPKEHLALLAVPMVPLQIILPLLISKYTAGPQPLNIFYKAMPYR LLLGLEYALLVWWTPKVEHQGGFPIYYYIIVLLSYALHQVTLYSMYVSIMAFNAKVSDPLIGGT YMTLLNTVSNLGGNWPSTVALWLVDPLTVKECVGASNQNCRTPEAIELCKKLGGSCVTALDGYY VESIVCVLIGFGWWFFLGPKFKKLQDEGPSSWKCKRTN hide sequence

RefSeq Acc Id:

ENSRNOP00000068212 ⟸ ENSRNOT00000076880

RefSeq Acc Id:

ENSRNOP00000013392 ⟸ ENSRNOT00000013392

RefSeq Acc Id:	XP_038958958 ⟸ XM_039103030
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038958957 ⟸ XM_039103029
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063138518 ⟸ XM_063282448
- Peptide Label:	isoform X2

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6AYY8-F1-model_v2	AlphaFold	Q6AYY8	1-550	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691357

Promoter ID:

EPDNEW_R1881

Type:

initiation region

Name:

Slc33a1_1

Description:

solute carrier family 33 member 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	154,542,776 - 154,542,836	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620653	AgrOrtholog
BioCyc Gene	G2FUF-52924	BioCyc
Ensembl Genes	ENSRNOG00000010023	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOG00055018454	UniProtKB/Swiss-Prot
	ENSRNOG00060004644	UniProtKB/Swiss-Prot
	ENSRNOG00065026864	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000013392	ENTREZGENE
	ENSRNOT00000013392.6	UniProtKB/Swiss-Prot
	ENSRNOT00055031354	UniProtKB/Swiss-Prot
	ENSRNOT00060007761	UniProtKB/Swiss-Prot
	ENSRNOT00065046344	UniProtKB/Swiss-Prot
Gene3D-CATH	1.20.1250.20	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7132173	IMAGE-MGC_LOAD
InterPro	AcetylCoA_trans_1-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	AmpG_permease/AT-1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MFS_trans_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:64018	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:93450	IMAGE-MGC_LOAD
NCBI Gene	64018	ENTREZGENE
PANTHER	ACETYL-COENZYME A TRANSPORTER 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR12778	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Acatn	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Slc33a1	PhenoGen
RatGTEx	ENSRNOG00000010023	RatGTEx
	ENSRNOG00055018454	RatGTEx
	ENSRNOG00060004644	RatGTEx
	ENSRNOG00065026864	RatGTEx
Superfamily-SCOP	MFS general substrate transporter	UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt	A6JVP5	ENTREZGENE, UniProtKB/TrEMBL
	ACATN_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q9JM68	ENTREZGENE
UniProt Secondary	Q9JM68	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-09	Slc33a1	solute carrier family 33 member 1	Slc33a1	solute carrier family 33 (acetyl-CoA transporter), member 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-11-17	Slc33a1	solute carrier family 33 (acetyl-CoA transporter), member 1			Name updated	1299863	APPROVED
2004-09-10	Slc33a1	acetyl-CoA transporter	Acatn		Symbol and Name updated	1299863	APPROVED
2002-08-07	Acatn	acetyl-CoA transporter			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed in brain, expression is higher in fetal and neonatal brain than in the adult	631870
gene_expression	expressed in neuronal cells in various regions of the brain	631870
gene_expression	differentially expressed in the neural tube, neural crest, and dorsal root ganglia during development

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)