Selenbp1 (selenium binding protein 1) - Rat Genome Database

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Gene: Selenbp1 (selenium binding protein 1) Rattus norvegicus
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Symbol: Selenbp1
Name: selenium binding protein 1
RGD ID: 620571
Description: Predicted to enable methanethiol oxidase activity. Predicted to be involved in protein transport. Predicted to act upstream of or within brown fat cell differentiation. Predicted to be located in fibrillar center. Orthologous to human SELENBP1 (selenium binding protein 1); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 56 kDa selenium-binding protein; methanethiol oxidase; MTO; rSBP; SBP56; Selenbp2; selenium binding protein 2; selenium-binding protein 1; selenium-binding protein 2; SP56
RGD Orthologs
Human
Mouse
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
NCBI Annotation Information: Note: LOC103689947 appears to be a duplicate placement of Selenbp1 on Rnor_6.0 (Annot. Release 105) that is present on Rn_Celera but is absent from the previous reference assembly (Rnor_5.0) and not supported by syntenic regions in mouse and human. It appears that Selenbp1 was annotated on Rn_Celera as LOC103689947. Selenbp1 annotation on Rnor_6.0 is thus supported by annotation on Rn_Celera (as LOC103689947) and additionally, synteny with mouse and human. BLAST analysis of the LOC103689947 underlying component AABR07012460.1 shows 99% identity with a ~60 kb region of NC_005101.4 including where Selenbp1 is annotated. Annotation of Selenbp1 at this location on Rnor_6.0 is supported by annotation of LOC103689947 on Rn_Celera. This apparent duplication could be explained by misassembly of several underlying components on Rnor_6.0. [17 Mar 2015]
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82185,183,022 - 185,193,612 (+)NCBIGRCr8
mRatBN7.22182,494,004 - 182,504,594 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2182,493,978 - 182,504,594 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2190,158,745 - 190,169,478 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02187,954,452 - 187,965,170 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02182,791,220 - 182,801,953 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02195,416,472 - 195,423,665 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2195,416,469 - 195,423,787 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl2196,105,569 - 196,113,149 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02214,896,716 - 214,903,904 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02215,588,465 - 215,598,473 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42189,840,450 - 189,881,332 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12189,785,972 - 189,796,482 (+)NCBI
Celera2175,037,375 - 175,046,988 (+)NCBICelera
Cytogenetic Map2q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-alpha-phellandrene  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrotoluene  (EXP)
2,4-dinitrotoluene  (EXP)
2-amino-2-deoxy-D-glucopyranose  (EXP)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
4-hydroxynon-2-enal  (ISO)
4-nitrophenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
acrylamide  (EXP,ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucosamine  (EXP)
all-trans-retinoic acid  (EXP)
alpha-phellandrene  (ISO)
alpha-pinene  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
amphetamine  (EXP)
aniline  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
benzo[a]pyrene  (ISO)
Benzo[k]fluoranthene  (ISO)
beta-D-glucosamine  (EXP)
bilirubin IXalpha  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
bleomycin A2  (EXP)
bromobenzene  (EXP)
buta-1,3-diene  (ISO)
C60 fullerene  (EXP)
cadmium atom  (EXP,ISO)
cadmium dichloride  (ISO)
cadmium sulfate  (ISO)
carbon nanotube  (ISO)
chlordecone  (ISO)
chlorohydrocarbon  (EXP)
chloroprene  (ISO)
ciguatoxin CTX1B  (ISO)
clobetasol  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumestrol  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
D-penicillamine  (EXP)
dexamethasone  (ISO)
dibenzofurans  (ISO)
dibutyl phthalate  (EXP,ISO)
diethylstilbestrol  (ISO)
dimethyl sulfoxide  (ISO)
dimethylarsinic acid  (EXP)
dioxygen  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
erlotinib hydrochloride  (ISO)
estriol  (ISO)
estrone  (ISO)
flutamide  (EXP)
folic acid  (ISO)
genistein  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
glycerol  (ISO)
glyphosate  (ISO)
indometacin  (ISO)
inulin  (ISO)
isoflavones  (ISO)
ivermectin  (ISO)
leflunomide  (EXP)
lipopolysaccharide  (ISO)
manganese(II) chloride  (EXP)
methanethiol  (ISO)
methapyrilene  (EXP)
methimazole  (EXP)
methoxychlor  (ISO)
methylmercury chloride  (EXP,ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-Nitrosopyrrolidine  (ISO)
naphthalene  (ISO)
nefazodone  (EXP)
nickel atom  (ISO)
nitrofen  (EXP)
Nonylphenol  (ISO)
O-methyleugenol  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
p-toluidine  (EXP)
paracetamol  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenethyl isothiocyanate  (EXP)
phenylephrine  (EXP)
phenylmercury acetate  (ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
propane-1,2-diol  (ISO)
propiconazole  (ISO)
quercetin  (EXP,ISO)
resveratrol  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (EXP,ISO)
Soman  (EXP)
succimer  (ISO)
sulfadimethoxine  (EXP)
sulforaphane  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
tanespimycin  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
topotecan  (EXP)
trichloroethene  (EXP)
trimellitic anhydride  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vinclozolin  (EXP)
zinc atom  (EXP)
zinc(0)  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA)
fibrillar center  (IEA,ISO)
membrane  (IEA)
nucleolus  (ISO)
nucleus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
2. Different patterns of regulation of the genes encoding the closely related 56 kDa selenium- and acetaminophen-binding proteins in normal tissues and during carcinogenesis. Lanfear J, etal., Carcinogenesis 1993 Mar;14(3):335-40.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
8. Integrated microarray analysis provided novel insights to the pathogenesis of glaucoma. Wang J, etal., Mol Med Rep. 2017 Dec;16(6):8735-8746. doi: 10.3892/mmr.2017.7711. Epub 2017 Oct 4.
Additional References at PubMed
PMID:15632090   PMID:16502470   PMID:18492766   PMID:19056867   PMID:23376485   PMID:23533145   PMID:25931508   PMID:27578022  


Genomics

Comparative Map Data
Selenbp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82185,183,022 - 185,193,612 (+)NCBIGRCr8
mRatBN7.22182,494,004 - 182,504,594 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2182,493,978 - 182,504,594 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2190,158,745 - 190,169,478 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02187,954,452 - 187,965,170 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02182,791,220 - 182,801,953 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02195,416,472 - 195,423,665 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2195,416,469 - 195,423,787 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl2196,105,569 - 196,113,149 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02214,896,716 - 214,903,904 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02215,588,465 - 215,598,473 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42189,840,450 - 189,881,332 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12189,785,972 - 189,796,482 (+)NCBI
Celera2175,037,375 - 175,046,988 (+)NCBICelera
Cytogenetic Map2q34NCBI
SELENBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381151,364,304 - 151,372,705 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1151,364,304 - 151,372,707 (-)EnsemblGRCh38hg38GRCh38
GRCh371151,336,780 - 151,345,181 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361149,603,404 - 149,611,788 (-)NCBINCBI36Build 36hg18NCBI36
Build 341148,149,853 - 148,158,237NCBI
Celera1124,452,070 - 124,460,453 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1122,714,749 - 122,723,196 (-)NCBIHuRef
CHM1_11152,732,433 - 152,740,866 (-)NCBICHM1_1
T2T-CHM13v2.01150,487,989 - 150,496,432 (-)NCBIT2T-CHM13v2.0
Selenbp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39394,840,394 - 94,852,069 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl394,840,367 - 94,852,069 (+)EnsemblGRCm39 Ensembl
GRCm38394,933,083 - 94,944,758 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl394,933,056 - 94,944,758 (+)EnsemblGRCm38mm10GRCm38
MGSCv37394,737,005 - 94,748,680 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36395,018,487 - 95,030,162 (+)NCBIMGSCv36mm8
Celera396,364,442 - 96,376,009 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map340.74NCBI

Variants

.
Variants in Selenbp1
59 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:174
Count of miRNA genes:136
Interacting mature miRNAs:143
Transcripts:ENSRNOT00000028510
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)243154682202446871Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)276539322202447032Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2112456140212696837Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2112456140212696837Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2114837527185876470Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2114837527185876470Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2114837675212549332Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2133914684202447032Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2135552573202446871Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2136445150202447032Rat
1581502Esta3Estrogen-induced thymic atrophy QTL 3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2136916935189599348Rat
1359022Ppulsi1Prepulse inhibition QTL 13.63prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)2136916935213594495Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2141194931223265385Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2141194931223265385Rat
71113Cari2Carrageenan-induced inflammation QTL 22.70.009hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)2141596551202447032Rat
724568Uae13Urinary albumin excretion QTL 134.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)2143157029210020885Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2143657411190602963Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2143657411190602963Rat
6903312Bw112Body weight QTL 1123.20.0013body mass (VT:0001259)body weight (CMO:0000012)2143657569184114274Rat
61401Niddm2Non-insulin dependent diabetes mellitus QTL 24.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2144599348189599348Rat
1598833Bp295Blood pressure QTL 2953.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2147798556192798556Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561221167075Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
1598805Memor8Memory QTL 83exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2150341585189039377Rat
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150341684202446871Rat
2301966Bp322Blood pressure QTL 3223.58arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150540301202447032Rat
1354609Niddm62Non-insulin dependent diabetes mellitus QTL 624.720.000006insulin secretion trait (VT:0003564)plasma insulin level (CMO:0000342)2150540301202447032Rat
12879836Kidm61Kidney mass QTL 610.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2152413072185122374Rat
12879837Am2Aortic mass QTL 20.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2152413072185122374Rat
12879838Cm86Cardiac mass QTL 860.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2152413072185122374Rat
12879839Cm85Cardiac mass QTL 850.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2152413072185122374Rat
12879840Bw179Body weight QTL 1790.005body mass (VT:0001259)body weight (CMO:0000012)2152413072185122374Rat
1359032Hrtrt18Heart rate QTL 18heart pumping trait (VT:2000009)heart rate (CMO:0000002)2157142078192625452Rat
1358900Bw48Body weight QTL 484.88body mass (VT:0001259)body weight (CMO:0000012)2157142078211086598Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2157142078226277316Rat
1302793Bw16Body weight QTL 1650.0001body mass (VT:0001259)body weight (CMO:0000012)2157142209202446871Rat
7488925Bp364Blood pressure QTL 3640.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2160564068205564068Rat
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2161699179222436696Rat
7488927Bp365Blood pressure QTL 3650.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2162765032207765032Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2164073756227146641Rat
1598838Bp290Blood pressure QTL 2901.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2166539266211539266Rat
1549833Bp257Blood pressure QTL 2570.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168354880185122374Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168358098223265385Rat
2307174Activ3Activity QTL 34.830.000058locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2168594495213594495Rat
61469Bp16Blood pressure QTL 165.64arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)2169745596214745596Rat
70162Bp63Blood pressure QTL 635.64arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)2169745596214745596Rat
631522Bp74Blood pressure QTL 740.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2172710921184114403Rat
2293084Iddm26Insulin dependent diabetes mellitus QTL 262.9blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2174930955213594495Rat
2300189Bmd48Bone mineral density QTL 485.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)2179335906224335906Rat
61417Cia10Collagen induced arthritis QTL 103.4joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)2179946951224946951Rat
8694435Bw166Body weight QTL 16614.080.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)2182171407227171407Rat
9589044Scfw1Subcutaneous fat weight QTL 15.80.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)2182171407227171407Rat
8694383Bw158Body weight QTL 1587.690.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)2182171407227171407Rat
8694194Abfw1Abdominal fat weight QTL 111.70.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)2182171407227171407Rat

Markers in Region
D2Rat126  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22182,534,917 - 182,535,150 (+)MAPPERmRatBN7.2
Rnor_6.02196,134,296 - 196,134,528NCBIRnor6.0
Rnor_5.02215,628,982 - 215,629,214UniSTSRnor5.0
RGSC_v3.42189,869,153 - 189,869,386RGDRGSC3.4
RGSC_v3.42189,869,154 - 189,869,386UniSTSRGSC3.4
RGSC_v3.12189,828,562 - 189,828,794RGD
Celera2175,076,961 - 175,077,193UniSTS
RH 3.4 Map21212.1RGD
RH 3.4 Map21212.1UniSTS
RH 2.0 Map2884.4RGD
SHRSP x BN Map270.0098RGD
Cytogenetic Map2q34UniSTS
RH144445  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22182,540,402 - 182,540,529 (+)MAPPERmRatBN7.2
Rnor_6.02196,139,781 - 196,139,907NCBIRnor6.0
Rnor_5.02215,634,467 - 215,634,593UniSTSRnor5.0
RGSC_v3.42189,874,639 - 189,874,765UniSTSRGSC3.4
Celera2175,082,442 - 175,082,568UniSTS
RH 3.4 Map21199.1UniSTS
Cytogenetic Map2q34UniSTS
AI072618  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22182,528,466 - 182,528,601 (+)MAPPERmRatBN7.2
Rnor_6.02196,127,845 - 196,127,979NCBIRnor6.0
Rnor_5.02215,622,531 - 215,622,665UniSTSRnor5.0
RGSC_v3.42189,862,703 - 189,862,837UniSTSRGSC3.4
Celera2175,070,511 - 175,070,645UniSTS
RH 3.4 Map21199.1UniSTS
Cytogenetic Map2q34UniSTS
BE115799  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22182,537,643 - 182,537,862 (+)MAPPERmRatBN7.2
Rnor_6.02196,137,022 - 196,137,240NCBIRnor6.0
Rnor_5.02215,631,708 - 215,631,926UniSTSRnor5.0
RGSC_v3.42189,871,880 - 189,872,098UniSTSRGSC3.4
Celera2175,079,683 - 175,079,901UniSTS
RH 3.4 Map21197.2UniSTS
Cytogenetic Map2q34UniSTS
RH135301  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22182,495,388 - 182,495,596 (+)MAPPERmRatBN7.2
Rnor_6.02196,096,163 - 196,096,370NCBIRnor6.0
Rnor_6.02195,407,048 - 195,407,255NCBIRnor6.0
Rnor_5.02215,589,882 - 215,590,089UniSTSRnor5.0
Rnor_5.02214,887,287 - 214,887,494UniSTSRnor5.0
RGSC_v3.42189,831,021 - 189,831,228UniSTSRGSC3.4
Celera2175,038,799 - 175,039,006UniSTS
RH 3.4 Map21200.9UniSTS
Cytogenetic Map2q34UniSTS
BI282436  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22182,504,372 - 182,504,544 (-)MAPPERmRatBN7.2
Rnor_6.02196,105,642 - 196,105,813NCBIRnor6.0
Rnor_6.02195,416,527 - 195,416,698NCBIRnor6.0
Rnor_5.02215,598,247 - 215,598,418UniSTSRnor5.0
Rnor_5.02214,896,766 - 214,896,937UniSTSRnor5.0
RGSC_v3.42189,840,500 - 189,840,671UniSTSRGSC3.4
Celera2175,046,762 - 175,046,933UniSTS
RH 3.4 Map21195.1UniSTS
Cytogenetic Map2q34UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system nervous system renal system reproductive system respiratory system
High
Medium
Low 2 2
Below cutoff 4 15 11 9 11 1 12 8 9

Sequence


RefSeq Acc Id: ENSRNOT00000071603   ⟹   ENSRNOP00000064790
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2182,497,282 - 182,504,594 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000088465   ⟹   ENSRNOP00000071154
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2182,497,535 - 182,504,594 (+)Ensembl
Rnor_6.0 Ensembl2196,105,569 - 196,113,149 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000097461   ⟹   ENSRNOP00000083317
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2182,493,978 - 182,504,594 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000101667   ⟹   ENSRNOP00000094007
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2182,493,978 - 182,504,594 (+)Ensembl
RefSeq Acc Id: NM_001329893   ⟹   NP_001316822
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82185,183,022 - 185,193,612 (+)NCBI
mRatBN7.22182,494,004 - 182,504,594 (+)NCBI
RefSeq Acc Id: ENSRNOP00000071154   ⟸   ENSRNOT00000088465
RefSeq Acc Id: ENSRNOP00000064790   ⟸   ENSRNOT00000071603
RefSeq Acc Id: ENSRNOP00000083317   ⟸   ENSRNOT00000097461
RefSeq Acc Id: ENSRNOP00000094007   ⟸   ENSRNOT00000101667
RefSeq Acc Id: NP_001316822   ⟸   NM_001329893
- UniProtKB: Q8VIF7 (UniProtKB/Swiss-Prot),   A6K2T3 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8VIF7-F1-model_v2 AlphaFold Q8VIF7 1-472 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620571 AgrOrtholog
Ensembl Genes ENSRNOG00000047158 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00000053812 Ensembl
  ENSRNOG00055032465 UniProtKB/Swiss-Prot
  ENSRNOG00060013955 UniProtKB/Swiss-Prot
  ENSRNOG00065027190 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000071603.3 UniProtKB/TrEMBL
  ENSRNOT00000088465.2 UniProtKB/TrEMBL
  ENSRNOT00000097461.1 UniProtKB/TrEMBL
  ENSRNOT00000101667 ENTREZGENE
  ENSRNOT00000101667.1 UniProtKB/Swiss-Prot
  ENSRNOT00055056083 UniProtKB/Swiss-Prot
  ENSRNOT00060023891 UniProtKB/Swiss-Prot
  ENSRNOT00065046932 UniProtKB/Swiss-Prot
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7100467 IMAGE-MGC_LOAD
InterPro Se-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:103689947 UniProtKB/Swiss-Prot
MGC_CLONE MGC:91524 IMAGE-MGC_LOAD
NCBI Gene Selenbp1 ENTREZGENE
PANTHER METHANETHIOL OXIDASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR23300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SBP56 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Selenbp1 PhenoGen
RatGTEx ENSRNOG00000047158 RatGTEx
  ENSRNOG00000053812 RatGTEx
  ENSRNOG00055032465 RatGTEx
  ENSRNOG00060013955 RatGTEx
  ENSRNOG00065027190 RatGTEx
Superfamily-SCOP 3-carboxy-cis,cis-mucoante lactonizing enzyme UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JZR8_RAT UniProtKB/TrEMBL
  A0A8I5ZWC7_RAT UniProtKB/TrEMBL
  A6K2T3 ENTREZGENE, UniProtKB/TrEMBL
  F1LRJ9_RAT UniProtKB/TrEMBL
  Q8VIF7 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-03-01 Selenbp1  selenium binding protein 1  Selenbp2  selenium binding protein 2  Data merged from RGD:9292945 737654 PROVISIONAL
2021-12-20 Selenbp2  selenium binding protein 2  LOC103689947  selenium-binding protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-08-25 LOC103689947  selenium-binding protein 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-02-22 Selenbp1  selenium binding protein 1  Selenbp1  selenium binding protein 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Selenbp1  selenium binding protein 2  Selenbp2    Symbol and Name updated 1299863 APPROVED
2002-08-07 Selenbp2  selenium binding protein 2      Symbol and Name status set to provisional 70820 PROVISIONAL