Gene: Sox9 (SRY box 9) Rattus norvegicus
Analyze
Symbol: Sox9
Name: SRY box 9
Description: ENCODES a protein that exhibits bHLH transcription factor binding; enhancer binding; transcription factor activity, sequence-specific DNA binding; INVOLVED IN cAMP-mediated signaling; cartilage development; positive regulation of gene expression; ASSOCIATED WITH Fractures, Bone; 46 XX gonadal dysgenesis (ortholog); 46, XX Testicular Disorders of Sex Development (ortholog); FOUND IN transcription factor complex; nuclear transcription factor complex (ortholog); nucleoplasm (ortholog); INTERACTS WITH all-trans-retinoic acid; ammonium chloride; bis(2-ethylhexyl) phthalate
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LOC100361122; LOC363699; SRY; SRY (sex determining region Y)-box 9; SRY (sex determining region Y)-box 9 (campomelic dysplasia, autosomal sex-reversal); SRY-box containing gene 9; transcription factor SOX-9
Orthologs:
Homo sapiens (human) : SOX9 (SRY-box 9)  HGNC
Mus musculus (house mouse) : Sox9 (SRY (sex determining region Y)-box 9)  MGI
Chinchilla lanigera (long-tailed chinchilla) : Sox9 (SRY-box 9)
Pan paniscus (bonobo/pygmy chimpanzee) : SOX9 (SRY-box 9)
Canis lupus familiaris (dog) : SOX9 (SRY-box 9)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Sox9 (SRY-box 9)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.010101,288,528 - 101,294,030 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.010100,964,754 - 100,970,581 (+)NCBIRnor5.0rn5Rnor5.0
RGSC_v3.410102,392,187 - 102,394,256 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.110102,408,236 - 102,408,622 (+)NCBI
Celera1096,424,278 - 96,429,703 (+)NCBI
Cytogenetic Map10q32.1NCBImapview
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Sox9
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Map Viewer
Vista
Vista + UCSC

RGD Object Information
RGD ID: 620474
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2017-09-05
Status: ACTIVE