Rps15 (ribosomal protein S15) - Rat Genome Database

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Gene: Rps15 (ribosomal protein S15) Rattus norvegicus
Analyze
Symbol: Rps15
Name: ribosomal protein S15
RGD ID: 62026
Description: A structural constituent of ribosome. Involved in liver regeneration and ribosomal small subunit assembly. Located in nucleoplasm. Part of cytosolic small ribosomal subunit. Is active in synapse. Biomarker of insulinoma. Orthologous to human RPS15 (ribosomal protein S15); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 40S ribosomal protein S15; insulinoma; rat insulinoma gene; RIG protein; small ribosomal subunit protein uS19
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Rps15-ps1   Rps15-ps2  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8710,066,572 - 10,068,167 (-)NCBIGRCr8
mRatBN7.279,416,003 - 9,417,442 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl79,416,004 - 9,417,450 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx712,292,692 - 12,294,132 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0714,168,034 - 14,169,474 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0712,035,497 - 12,036,936 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0712,282,134 - 12,283,573 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl712,282,109 - 12,283,608 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0712,451,929 - 12,453,368 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4710,927,341 - 10,928,780 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1710,927,341 - 10,928,780 (-)NCBI
Celera77,592,789 - 7,594,228 (-)NCBICelera
Cytogenetic Map7q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,4-dinitrotoluene  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
Allylamine  (EXP)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenic trichloride  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
C60 fullerene  (EXP)
cadmium dichloride  (EXP)
carbon nanotube  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
clofibric acid  (EXP)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
decabromodiphenyl ether  (ISO)
dextran sulfate  (ISO)
dibutyl phthalate  (ISO)
disodium selenite  (ISO)
disulfiram  (ISO)
dorsomorphin  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fenthion  (ISO)
flavonoids  (EXP)
folic acid  (ISO)
gamma-hexachlorocyclohexane  (EXP)
indometacin  (EXP)
inulin  (ISO)
iron(III) nitrilotriacetate  (EXP)
ivermectin  (ISO)
L-methionine  (ISO)
maneb  (ISO)
Mesaconitine  (EXP)
methylmercury chloride  (ISO)
N-nitrosodiethylamine  (EXP)
nefazodone  (EXP)
nimesulide  (EXP)
nitric oxide  (ISO)
ochratoxin A  (ISO)
ozone  (EXP)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
PhIP  (EXP)
rimonabant  (ISO)
rotenone  (EXP)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
tamoxifen  (ISO)
tetrachloromethane  (ISO)
thalidomide  (ISO)
theophylline  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, etal., Genome Res 1996 Sep;6(9):791-806.
3. Isolation of eukaryotic ribosomal proteins. Purification and characterization of the 40 S ribosomal subunit proteins Sa, Sc, S3a, S3b, S5', S9, S10, S11, S12, S14, S15, S15', S16, S17, S18, S19, S20, S21, S26, S27', and S29. Collatz E, etal., J Biol Chem. 1977 Dec 25;252(24):9071-80.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Expression of the insulinoma gene rig during liver regeneration and in primary cultured hepatocytes. Inoue C, etal., Biochem Biophys Res Commun. 1988 Feb 15;150(3):1302-8.
6. Ribosomal proteins S2, S6, S10, S14, S15 and S25 are localized on the surface of mammalian 40 S subunits and stabilize their conformation. A study with immobilized trypsin. Marion MJ and Marion C, FEBS Lett. 1988 May 23;232(2):281-5.
7. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
8. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
9. Functional dichotomy of ribosomal proteins during the synthesis of mammalian 40S ribosomal subunits. O'Donohue MF, etal., J Cell Biol. 2010 Sep 6;190(5):853-66. doi: 10.1083/jcb.201005117.
10. Semiquantitative proteomic analysis of rat forebrain postsynaptic density fractions by mass spectrometry. Peng J, etal., J Biol Chem. 2004 May 14;279(20):21003-11. doi: 10.1074/jbc.M400103200. Epub 2004 Mar 12.
11. GOA pipeline RGD automated data pipeline
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. The primary structure of rat rig/ribosomal protein S15 gene. Takasawa S, etal., Biochim Biophys Acta 1992 Sep 24;1132(2):228-30.
14. Novel gene activated in rat insulinomas. Takasawa S, etal., Diabetes 1986 Oct;35(10):1178-80.
15. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:2044758   PMID:8706699   PMID:14643017   PMID:15883184   PMID:16037817   PMID:16210410   PMID:18697920   PMID:19946888   PMID:21423176   PMID:22658674   PMID:22681889   PMID:24625528  
PMID:24930395   PMID:30053369   PMID:35352799  


Genomics

Comparative Map Data
Rps15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8710,066,572 - 10,068,167 (-)NCBIGRCr8
mRatBN7.279,416,003 - 9,417,442 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl79,416,004 - 9,417,450 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx712,292,692 - 12,294,132 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0714,168,034 - 14,169,474 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0712,035,497 - 12,036,936 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0712,282,134 - 12,283,573 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl712,282,109 - 12,283,608 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0712,451,929 - 12,453,368 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4710,927,341 - 10,928,780 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1710,927,341 - 10,928,780 (-)NCBI
Celera77,592,789 - 7,594,228 (-)NCBICelera
Cytogenetic Map7q11NCBI
RPS15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38191,438,396 - 1,440,495 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl191,438,358 - 1,440,495 (+)EnsemblGRCh38hg38GRCh38
GRCh37191,438,395 - 1,440,494 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36191,389,363 - 1,391,492 (+)NCBINCBI36Build 36hg18NCBI36
Build 34191,389,378 - 1,391,492NCBI
Celera191,372,361 - 1,374,490 (+)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef191,212,788 - 1,214,917 (+)NCBIHuRef
CHM1_1191,438,358 - 1,440,487 (+)NCBICHM1_1
T2T-CHM13v2.0191,408,393 - 1,410,492 (+)NCBIT2T-CHM13v2.0
Rps15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391080,128,265 - 80,129,948 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1080,128,287 - 80,129,948 (+)EnsemblGRCm39 Ensembl
GRCm381080,292,431 - 80,294,114 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1080,292,453 - 80,294,114 (+)EnsemblGRCm38mm10GRCm38
MGSCv371079,755,176 - 79,756,859 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361079,695,586 - 79,697,241 (+)NCBIMGSCv36mm8
Celera1081,307,304 - 81,308,987 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
Rps15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554956,492,968 - 6,495,435 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554956,492,968 - 6,495,435 (-)NCBIChiLan1.0ChiLan1.0
LOC100979953
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2205,647,875 - 5,652,448 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1194,884,658 - 4,889,535 (-)NCBINHGRI_mPanPan1
RPS15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12057,406,544 - 57,407,015 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2057,406,545 - 57,413,421 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2057,198,050 - 57,199,151 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02058,137,324 - 58,138,425 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12057,193,315 - 57,194,416 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02057,672,974 - 57,674,075 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02057,874,995 - 57,876,096 (-)NCBIUU_Cfam_GSD_1.0
Rps15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118217,071,378 - 217,072,674 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936588761,924 - 764,742 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936588762,153 - 763,405 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl277,043,329 - 77,046,747 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1277,043,329 - 77,044,749 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2277,935,614 - 77,937,034 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPS15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.161,211,716 - 1,213,896 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl61,211,713 - 1,214,044 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660817,639,665 - 7,641,840 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248287,252,123 - 7,254,441 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248287,252,123 - 7,254,537 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rps15
16 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:175
Count of miRNA genes:139
Interacting mature miRNAs:154
Transcripts:ENSRNOT00000029791
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 2 16 14 14 4 14 22 18 31 1
Medium 1 27 43 27 15 27 8 11 52 17 10 10 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_017151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA892895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC141331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI603168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY390387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D11388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M19393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000029791   ⟹   ENSRNOP00000035156
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl79,416,005 - 9,417,450 (-)Ensembl
Rnor_6.0 Ensembl712,282,109 - 12,283,608 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000113730   ⟹   ENSRNOP00000092210
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl79,416,004 - 9,417,291 (-)Ensembl
RefSeq Acc Id: NM_017151   ⟹   NP_058847
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8710,066,676 - 10,068,115 (-)NCBI
mRatBN7.279,416,003 - 9,417,442 (-)NCBI
Rnor_6.0712,282,134 - 12,283,573 (-)NCBI
Rnor_5.0712,451,929 - 12,453,368 (-)NCBI
RGSC_v3.4710,927,341 - 10,928,780 (-)RGD
Celera77,592,789 - 7,594,228 (-)RGD
Sequence:
RefSeq Acc Id: XM_063263114   ⟹   XP_063119184
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8710,066,572 - 10,068,094 (-)NCBI
RefSeq Acc Id: XM_063263115   ⟹   XP_063119185
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8710,066,572 - 10,068,167 (-)NCBI
RefSeq Acc Id: XM_063263116   ⟹   XP_063119186
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8710,066,678 - 10,068,094 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_058847   ⟸   NM_017151
- UniProtKB: P62845 (UniProtKB/Swiss-Prot),   A6K8N0 (UniProtKB/TrEMBL),   D3ZAK6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000035156   ⟸   ENSRNOT00000029791
RefSeq Acc Id: ENSRNOP00000092210   ⟸   ENSRNOT00000113730
RefSeq Acc Id: XP_063119185   ⟸   XM_063263115
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063119184   ⟸   XM_063263114
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063119186   ⟸   XM_063263116
- Peptide Label: isoform X3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62845-F1-model_v2 AlphaFold P62845 1-145 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695026
Promoter ID:EPDNEW_R5550
Type:initiation region
Name:Rps15_1
Description:ribosomal protein S15
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0712,283,573 - 12,283,633EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:62026 AgrOrtholog
BioCyc Gene G2FUF-34929 BioCyc
Ensembl Genes ENSRNOG00000024603 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00000043026 UniProtKB/TrEMBL
  ENSRNOG00055032536 UniProtKB/Swiss-Prot
  ENSRNOG00060032337 UniProtKB/Swiss-Prot
  ENSRNOG00065018923 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000029791 ENTREZGENE
  ENSRNOT00000029791.5 UniProtKB/Swiss-Prot
  ENSRNOT00000067441.3 UniProtKB/TrEMBL
  ENSRNOT00000113730.1 UniProtKB/Swiss-Prot
  ENSRNOT00055056232 UniProtKB/Swiss-Prot
  ENSRNOT00060056019 UniProtKB/Swiss-Prot
  ENSRNOT00065031779 UniProtKB/Swiss-Prot
InterPro Ribosomal_S15/S19_CS UniProtKB/TrEMBL
  Ribosomal_S19 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S19_CS UniProtKB/Swiss-Prot
  Ribosomal_S19_S15_SF UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
  Ribosomal_S19A/S15e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:29285 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 29285 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S15 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11880 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribosomal_S19 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rps15 PhenoGen
PIRSF Ribosomal_S19 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS RIBOSOMALS19 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE RIBOSOMAL_S19 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000024603 RatGTEx
  ENSRNOG00000043026 RatGTEx
  ENSRNOG00055032536 RatGTEx
  ENSRNOG00060032337 RatGTEx
  ENSRNOG00065018923 RatGTEx
Superfamily-SCOP Ribosomal protein S19 UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
TIGR TC204025
UniProt A6K8N0 ENTREZGENE, UniProtKB/TrEMBL
  D3ZAK6 ENTREZGENE, UniProtKB/TrEMBL
  P62845 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary P11174 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Rps15  ribosomal protein S15      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_transcript consists of four exons and three introns spanning 2 kbp 633910