Smad5 (SMAD family member 5) - Rat Genome Database

Name: Smad5
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Smad5 (SMAD family member 5) Rattus norvegicus

Analyze

Symbol:

Smad5

Name:

SMAD family member 5

RGD ID:

620158

Description:

Predicted to enable several functions, including DNA-binding transcription repressor activity, RNA polymerase II-specific; I-SMAD binding activity; and enzyme binding activity. Involved in Mullerian duct regression and ossification. Predicted to be located in cytosol and nucleoplasm. Predicted to be part of heteromeric SMAD protein complex. Orthologous to human SMAD5 (SMAD family member 5); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; transforming growth factor-beta superfamily mediated signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; ammonium chloride.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

MAD homolog 5; MAD homolog 5 (Drosophila); Madh5; mothers against decapentaplegic homolog 5; mothers against DPP homolog 5; SMAD 5; SMAD, mothers against DPP homolog 5; SMAD, mothers against DPP homolog 5 (Drosophila)

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SMAD5 (SMAD family member 5)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Smad5 (SMAD family member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Smad5 (SMAD family member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SMAD5 (SMAD family member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SMAD5 (SMAD family member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Smad5 (SMAD family member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SMAD5 (SMAD family member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SMAD5 (SMAD family member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Smad5 (SMAD family member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SMAD5 (SMAD family member 5)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Smad5 (SMAD family member 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	smad5 (SMAD family member 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	sma-2	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Mad	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	7,867,640 - 7,896,983 (-)	NCBI		GRCr8
mRatBN7.2	17	7,862,332 - 7,891,678 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	7,864,720 - 7,891,634 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	7,885,190 - 7,895,389 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	9,416,674 - 9,426,832 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	7,881,573 - 7,891,768 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	8,307,448 - 8,336,996 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	8,311,796 - 8,331,032 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	10,484,309 - 10,513,839 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	13,814,164 - 13,824,358 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	13,814,163 - 13,824,358 (-)	NCBI
Celera	17	7,961,603 - 7,971,797 (-)	NCBI		Celera
Cytogenetic Map	17	p14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Cocaine-Related Disorders (ISO)

familial adenomatous polyposis 1 (ISO)

genetic disease (ISO)

granulosa cell tumor (ISO)

Hereditary Neoplastic Syndromes (ISO)

Neurodevelopmental Disorders (ISO)

Testicular Neoplasms (ISO)

type 2 diabetes mellitus (ISO)

withdrawal disorder (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (ISO)

5-methoxypsoralen (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

amphetamine (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (EXP,ISO)

arsenic atom (EXP,ISO)

aucubin (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bexarotene (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

cocaine (EXP)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

deguelin (ISO)

dexamethasone (EXP,ISO)

dimethylselenide (ISO)

dorsomorphin (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

formaldehyde (ISO)

gentamycin (EXP)

glycerol 2-phosphate (ISO)

hydrogen peroxide (ISO)

hydroxyl (ISO)

imperatorin (ISO)

ivermectin (ISO)

L-ascorbic acid (ISO)

lead diacetate (EXP,ISO)

leflunomide (ISO)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

phencyclidine (ISO)

phenobarbital (ISO)

picoxystrobin (ISO)

pirinixic acid (ISO)

quercetin (ISO)

resveratrol (EXP,ISO)

rotenone (ISO)

Salidroside (ISO)

simvastatin (ISO)

sirtinol (ISO)

sodium arsenite (ISO)

tert-butyl hydroperoxide (ISO)

testosterone enanthate (ISO)

theophylline (ISO)

thioacetamide (EXP)

trichloroethene (EXP)

triptonide (ISO)

valproic acid (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

anatomical structure morphogenesis (IBA,IEA)

BMP signaling pathway (IBA,IEA,ISO,ISS)

bone development (ISO)

cardiac muscle contraction (ISO)

cartilage development (ISO)

cell differentiation (IBA,IEA)

cellular response to organic cyclic compound (ISO)

embryonic pattern specification (ISS)

erythrocyte differentiation (ISO)

germ cell development (ISO)

Mullerian duct regression (IMP)

negative regulation of apoptotic process (ISO)

negative regulation of Fas signaling pathway (ISO)

negative regulation of gene expression (ISO)

negative regulation of transcription by RNA polymerase II (ISO)

ossification (IEP)

osteoblast differentiation (ISO)

osteoblast fate commitment (ISO)

positive regulation of osteoblast differentiation (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

regulation of DNA-templated transcription (IEA)

regulation of ossification (NAS)

regulation of transcription by RNA polymerase II (IBA)

SMAD protein signal transduction (IBA,IEA,ISO)

transforming growth factor beta receptor signaling pathway (IBA,IEA,ISO)

ureteric bud development (ISO)

Cellular Component

cytoplasm (IEA,ISO)

cytosol (IEA,ISO)

heteromeric SMAD protein complex (IBA,IEA)

mitochondrion (IEA)

nucleoplasm (IEA,ISO)

nucleus (IEA,ISO)

protein-containing complex (ISO)

transcription regulator complex (IEA)

Molecular Function

DEAD/H-box RNA helicase binding (ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA,IEA)

DNA-binding transcription repressor activity, RNA polymerase II-specific (ISO)

I-SMAD binding (IBA,IEA)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA,IEA,ISO)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (ISO)

sequence-specific double-stranded DNA binding (ISO)

ubiquitin protein ligase binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

Bone morphogenetic proteins signaling pathway (IMP,ISO)

transforming growth factor-beta superfamily mediated signaling pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	The zinc transporter SLC39A13/ZIP13 is required for connective tissue development; its involvement in BMP/TGF-beta signaling pathways.	Fukada T, etal., PLoS One. 2008;3(11):e3642. doi: 10.1371/journal.pone.0003642. Epub 2008 Nov 5.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	Conditional deletion of Smad1 and Smad5 in somatic cells of male and female gonads leads to metastatic tumor development in mice.	Pangas SA, etal., Mol Cell Biol. 2008 Jan;28(1):248-57. Epub 2007 Oct 29.
7.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
8.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
9.	GOA pipeline	RGD automated data pipeline
10.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
11.	Downregulation of type II bone morphogenetic protein receptor in hypoxic pulmonary hypertension.	Takahashi H, etal., Am J Physiol Lung Cell Mol Physiol. 2006 Mar;290(3):L450-8. Epub 2005 Dec 16.
12.	TGF-beta, BMPS, and their signal transducing mediators, Smads, in rat fracture healing.	Yu Y, etal., J Biomed Mater Res 2002 Jun 5;60(3):392-7.
13.	Smad5, a tumor suppressor candidate at 5q31.1, is hemizygously lost and not mutated in the retained allele in human leukemia cell line HL60.	Zavadil J, etal., Leukemia. 1997 Aug;11(8):1187-92.
14.	Mullerian inhibiting substance regulates its receptor/SMAD signaling and causes mesenchymal transition of the coelomic epithelial cells early in Mullerian duct regression.	Zhan Y, etal., Development. 2006 Jun;133(12):2359-69. Epub 2006 May 10.

Additional References at PubMed

PMID:11278251	PMID:11376112	PMID:11404080	PMID:11729207	PMID:12151307	PMID:12477932	PMID:14656760	PMID:15150273	PMID:15557274	PMID:15591122	PMID:17347486	PMID:17456754
PMID:18548003	PMID:18590716	PMID:18692037	PMID:18776146	PMID:19103752	PMID:19224984	PMID:19252488	PMID:19793887	PMID:20079400	PMID:20522807	PMID:20843790	PMID:21515935
PMID:22500633	PMID:22964636	PMID:23610558	PMID:25725805	PMID:26687945	PMID:27035233	PMID:28202235	PMID:28369590	PMID:35170385

Genomics

Comparative Map Data

Smad5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	7,867,640 - 7,896,983 (-)	NCBI		GRCr8
mRatBN7.2	17	7,862,332 - 7,891,678 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	7,864,720 - 7,891,634 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	7,885,190 - 7,895,389 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	9,416,674 - 9,426,832 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	7,881,573 - 7,891,768 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	8,307,448 - 8,336,996 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	8,311,796 - 8,331,032 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	10,484,309 - 10,513,839 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	13,814,164 - 13,824,358 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	13,814,163 - 13,824,358 (-)	NCBI
Celera	17	7,961,603 - 7,971,797 (-)	NCBI		Celera
Cytogenetic Map	17	p14	NCBI

SMAD5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	136,132,845 - 136,182,733 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	136,132,845 - 136,188,747 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	135,468,534 - 135,518,421 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	135,496,435 - 135,546,321 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	135,496,434 - 135,546,321	NCBI
Celera	5	131,593,276 - 131,643,157 (+)	NCBI		Celera
Cytogenetic Map	5	q31.1	NCBI
HuRef	5	130,657,006 - 130,706,874 (+)	NCBI		HuRef
CHM1_1	5	134,901,165 - 134,951,034 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	136,655,373 - 136,705,263 (+)	NCBI		T2T-CHM13v2.0

Smad5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	56,850,804 - 56,890,191 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	56,850,823 - 56,890,190 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	56,703,010 - 56,742,378 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	56,703,010 - 56,742,377 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	56,804,371 - 56,843,739 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	56,733,051 - 56,751,999 (+)	NCBI		MGSCv36	mm8
Celera	13	57,765,382 - 57,797,308 (+)	NCBI		Celera
Cytogenetic Map	13	B1	NCBI
cM Map	13	30.12	NCBI

Smad5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	31,183,659 - 31,229,384 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955408	31,183,727 - 31,228,355 (+)	NCBI	ChiLan1.0	ChiLan1.0

SMAD5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	131,419,826 - 131,469,837 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	129,559,444 - 129,609,397 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	131,524,229 - 131,574,119 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	137,663,558 - 137,713,130 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	137,664,067 - 137,712,635 (+)	Ensembl	panpan1.1		panPan2

SMAD5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	24,027,603 - 24,082,673 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	24,028,126 - 24,078,169 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	22,774,580 - 22,829,238 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	24,843,618 - 24,898,398 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	24,843,660 - 24,898,392 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	23,530,270 - 23,584,907 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	23,397,527 - 23,452,566 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	24,046,574 - 24,101,311 (+)	NCBI		UU_Cfam_GSD_1.0

Smad5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	124,200,433 - 124,242,080 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936597	3,225,374 - 3,264,604 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936597	3,225,374 - 3,264,604 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SMAD5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	138,287,710 - 138,344,762 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	138,287,635 - 138,344,092 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

SMAD5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	38,877,294 - 38,926,208 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	38,877,315 - 38,921,202 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666034	38,986,583 - 39,035,567 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Smad5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624733	10,931,061 - 10,983,669 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624733	10,927,264 - 10,983,049 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Smad5
97 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	347
Count of miRNA genes:	208
Interacting mature miRNAs:	245
Transcripts:	ENSRNOT00000016704
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
9590316	Scort21	Serum corticosterone level QTL 21	4.75	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	1	22871563	Rat
10401807	Kidm52	Kidney mass QTL 52			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	17	1	31701463	Rat
70184	BpQTLcluster14	Blood pressure QTL cluster 14	3.38		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	1	31990913	Rat
631207	Niddm41	Non-insulin dependent diabetes mellitus QTL 41			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	17	1	37830672	Rat
1354658	Spl8	Serum phospholipid level QTL 8	3.8		blood VLDL phospholipid amount (VT:0010507)	blood very low density lipoprotein phospholipid level (CMO:0001571)	17	1	60781592	Rat
1354581	Bp247	Blood pressure QTL 247	4.5		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	17	1	69599340	Rat
1354662	Rf49	Renal function QTL 49	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	17	1	69599340	Rat
1641902	Colcr7	Colorectal carcinoma resistance QTL 7	3.35	0.0044	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	17	2115149	21881669	Rat
1300123	Bp194	Blood pressure QTL 194	2.82		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	2115149	34551001	Rat
631499	Stl1	Serum triglyceride level QTL 1	3.6		blood triglyceride amount (VT:0002644)	blood triglyceride level (CMO:0000118)	17	3271398	27389946	Rat
2324619	Coatc4	Coat color QTL 4		0.001	coat/hair pigmentation trait (VT:0010463)	pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)	17	4299130	21293263	Rat
2324619	Coatc4	Coat color QTL 4		0.001	coat/hair pigmentation trait (VT:0010463)	pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811)	17	4299130	21293263	Rat
1354613	Kidm14	Kidney mass QTL 14	6.2		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	17	4299130	35837242	Rat
1354596	Bw32	Body weight QTL 32	4.5		body mass (VT:0001259)	body weight (CMO:0000012)	17	4299130	60781592	Rat
1354630	Cm34	Cardiac mass QTL 34	8.7		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	17	4299130	69599340	Rat
1354638	Insul1	Insulin level QTL 1	4.8		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	17	4299130	69599340	Rat
1354651	Lmblg2	Limb length QTL 2	6		tibia length (VT:0004357)	tibia length (CMO:0000450)	17	4299130	69599340	Rat
2293648	Bmd31	Bone mineral density QTL 31	4.5	0.0001	femur size trait (VT:1000369)	femoral neck cortical cross-sectional area (CMO:0001702)	17	4354487	27028127	Rat
2293664	Bmd28	Bone mineral density QTL 28	5.1	0.0001	femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	17	4354487	27028127	Rat
2303627	Vencon8	Ventilatory control QTL 8		0.001	respiration trait (VT:0001943)	tidal volume (CMO:0000222)	17	4528038	49528038	Rat
10054088	Scort28	Serum corticosterone level QTL 28	2.04	0.0102	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	4528038	49528038	Rat

Markers in Region

RH94764

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	7,867,086 - 7,867,256 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	8,312,205 - 8,312,374	NCBI	Rnor6.0
Rnor_5.0	17	10,489,061 - 10,489,230	UniSTS	Rnor5.0
RGSC_v3.4	17	13,814,143 - 13,814,312	UniSTS	RGSC3.4
Celera	17	7,961,582 - 7,961,751	UniSTS
Cytogenetic Map	17	p14	UniSTS

RH136684

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	7,866,784 - 7,866,967 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	8,311,903 - 8,312,085	NCBI	Rnor6.0
Rnor_5.0	17	10,488,759 - 10,488,941	UniSTS	Rnor5.0
RGSC_v3.4	17	13,813,841 - 13,814,023	UniSTS	RGSC3.4
Celera	17	7,961,280 - 7,961,462	UniSTS
RH 3.4 Map	17	73.9	UniSTS
Cytogenetic Map	17	p14	UniSTS

Smad5

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	7,873,943 - 7,874,094 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	8,319,062 - 8,319,212	NCBI	Rnor6.0
Rnor_5.0	17	10,495,918 - 10,496,068	UniSTS	Rnor5.0
RGSC_v3.4	17	13,821,000 - 13,821,150	UniSTS	RGSC3.4
Celera	17	7,968,439 - 7,968,589	UniSTS
Cytogenetic Map	17	p14	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	40	40	24	19	24	8	8	74	35	39	11	8
Low		3	17	17		17		3			2
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_021692	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253586	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253587	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253588	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771447	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771448	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600658	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600659	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB010955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC070905	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC161849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474032	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000016704 ⟹ ENSRNOP00000016704

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	7,866,696 - 7,890,987 (-)	Ensembl
Rnor_6.0 Ensembl	17	8,311,796 - 8,331,032 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000099544 ⟹ ENSRNOP00000091448

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	7,864,720 - 7,890,987 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000102907 ⟹ ENSRNOP00000077054

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	7,866,696 - 7,891,634 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000105138 ⟹ ENSRNOP00000093149

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	7,866,678 - 7,878,169 (-)	Ensembl

RefSeq Acc Id:

NM_021692 ⟹ NP_067724

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	7,872,414 - 7,882,608 (-)	NCBI
mRatBN7.2	17	7,867,108 - 7,877,302 (-)	NCBI
Rnor_6.0	17	8,312,226 - 8,322,420 (-)	NCBI
Rnor_5.0	17	10,484,309 - 10,513,839 (-)	NCBI
RGSC_v3.4	17	13,814,164 - 13,824,358 (-)	RGD
Celera	17	7,961,603 - 7,971,797 (-)	RGD

Sequence:

show sequence

ACTCTTCTCCTGTGATTCTGCTTTTCGTGTCTACTGACTTTGATTACAGGAAAGGCTCTGACGA
TTCGTATCAAATGACGTCAATGGCCAGCCTGTTTTCTTTCACTAGTCCAGCCGTGAAGCGATTG
TTGGGCTGGAAACAAGGTGATGAGGAAGAGAAATGGGCAGAAAAGGCCGTGGATGCTTTAGTGA
AAAAGCTGAAGAAGAAGAAGGGCGCCATGGAGGAGTTGGAGAAAGCCTTGAGCAGCCCAGGACA
GCCAAGCAAGTGTGTCACTATCCCCAGGTCCTTGGACGGCCGTTTGCAAGTCTCTCACAGGAAA
GGCTTGCCCCACGTTATATATTGCCGTGTTTGGCGCTGGCCAGATTTGCAGAGCCATCATGAGC
TAAAGCCTTTGGATATTTGTGAGTTTCCTTTTGGATCGAAGCAAAAAGAAGTTTGTATCAATCC
ATACCACTATAAGAGAGTGGAGAGTCCAGTCTTACCTCCAGTGTTAGTGCCTCGTCACAACGAA
TTCAATCCCCAGCACAGCCTTCTGGTTCAGTTCAGGAACCTGAGCCACAATGAGCCGCACATGC
CCCAGAATGCCACGTTTCCTGATTCCTTCCACCAGCCCAACAGCACTCCTTTCCCCTTATCTCC
TAACAGCCCCTATCCTCCTTCCCCTGCTAGCAGCACATATCCCAACTCCCCTGCAAGCTCCGGA
CCAGGAAGTCCATTTCAACTCCCAGCTGATACCCCTCCCCCTGCCTATATGCCACCTGACGATC
AGATGGGTCAGGATAACTCCCAGCCTATGGACACAAGCAACAACATGATTCCTCAGATCATGCC
CAGCATATCTAGCAGAGATGTTCAGCCTGTTGCCTATGAAGAGCCCAAACACTGGTGTTCGATT
GTGTACTATGAACTGAACAACCGTGTCGGGGAAGCTTTCCATGCGTCTTCCACCAGTGTGTTAG
TAGACGGGTTTACAGACCCTGCCAATAACAAGAGCCGCTTCTGCTTGGGGCTGCTGTCCAACGT
TAATCGCAACTCAACCATCGAGAACACCAGGCGGCACATCGGGAAAGGTGTCCATCTATACTAC
GTTGGTGGGGAGGTGTATGCCGAGTGTCTTAGTGACAGCAGCATCTTTGTTCAGAGTAGGAACT
GCAACTTTCACCATGGCTTCCACCCCACCACCGTCTGTAAGATTCCCAGCAGCTGCAGCCTCAA
AATTTTTAACAATCAGGAGTTTGCTCAGCTTCTGGCTCAGTCAGTCAACCATGGGTTTGAGGCT
GTGTATGAGCTCACCAAGATGTGTACCATTCGAATGAGTTTTGTCAAGGGCTGGGGAGCAGAGT
ACCACCGACAGGATGTAACCAGTACTCCATGCTGGATTGAGATTCACCTCCATGGGCCTCTGCA
GTGGCTGGATAAAGTCCTGACCCAGATGGGCTCTCCGCTGAACCCCATTTCTTCTGTTTCATAG
TGCAGAAGTATTCTTTTCAACTATATTTTTAGTGGACTTGTTTTAATTTTAGAGGAATTTCCAG
CACAGATACTGTGAGCTGACATGGAAAAACAGATATTATGGCTTATTTTTTCTACGTAATTGTG
ACCAACACATTTGTATTTTATGATATTACATTTGTTTGTATTCGTGTTCATTGTGATTAACTTT
CAAAAGTATTGTAAACGACAT

hide sequence

RefSeq Acc Id:

XM_006253586 ⟹ XP_006253648

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	7,867,640 - 7,896,954 (-)	NCBI
mRatBN7.2	17	7,862,332 - 7,891,660 (-)	NCBI
Rnor_6.0	17	8,307,448 - 8,336,996 (-)	NCBI
Rnor_5.0	17	10,484,309 - 10,513,839 (-)	NCBI

Sequence:

show sequence

TCCGGGTCCCCGGCGAGCGGGCGCCGAGCGCTTGTCCGGCAGCCGAGCTGCTAATAAAGTTGCG
GCGCGTGCACAGCGCGGCGACGGCGTGAGGAGAGCGCGCCCGGGCGGCTGGGAGAGTTGTGTGA
AGAGTTAGATCTGTGACTCTAGAGGAGCTGTGGGCACCTGCTCTGTTGGAGCTTTCCTGCCGAC
AGTCCTAGGTGCCTGTGGAGGAGGACAGAGACGTCTGCCATATCTTCAGGAGCTGGAGGAGTTT
GTGACCCATCTGATTTGGGTGTCGGAATCCTGGGCAAGGGCACCTTCGAGTCATCTTTTTTAAC
CTCTGAGCTGTCATTCCCATCCTAAGATGCCTGTGAAGAATTTTGGAGAAAAAATGGACTTGTC
CTAATGAAGAAGCATATGGGATCCTTAAAGTTAAATGTCACTCCCCCTCCACTGGGACCTTGTG
CTTGAGGCCTGCATGTGACTCTTCTCCTGTGATTCTGCTTTTCGTGTCTACTGACTTTGATTAC
AGGAAAGGCTCTGACGATTCGTATCAAATGACGTCAATGGCCAGCCTGTTTTCTTTCACTAGTC
CAGCCGTGAAGCGATTGTTGGGCTGGAAACAAGGTGATGAGGAAGAGAAATGGGCAGAAAAGGC
CGTGGATGCTTTAGTGAAAAAGCTGAAGAAGAAGAAGGGCGCCATGGAGGAGTTGGAGAAAGCC
TTGAGCAGCCCAGGACAGCCAAGCAAGTGTGTCACTATCCCCAGGTCCTTGGACGGCCGTTTGC
AAGTCTCTCACAGGAAAGGCTTGCCCCACGTTATATATTGCCGTGTTTGGCGCTGGCCGGATTT
GCAGAGCCATCATGAGCTAAAGCCTTTGGATATTTGTGAGTTTCCTTTTGGATCGAAGCAAAAA
GAAGTTTGTATCAATCCATACCACTATAAGAGAGTGGAGAGTCCAGTCTTACCTCCAGTGTTAG
TGCCTCGTCACAACGAATTCAATCCCCAGCACAGCCTTCTGGTTCAGTTCAGGAACCTGAGCCA
CAATGAGCCGCACATGCCCCAGAATGCCACGTTTCCTGATTCCTTCCACCAGCCCAACAGCACT
CCTTTCCCCTTATCTCCTAACAGCCCCTATCCTCCTTCCCCTGCTAGCAGCACATATCCCAACT
CCCCTGCAAGCTCCGGACCAGGAAGTCCATTTCAACTCCCAGCTGATACCCCTCCCCCTGCCTA
TATGCCACCTGACGATCAGATGGGTCAGGATAACTCCCAGCCTATGGACACAAGCAACAACATG
ATTCCTCAGATCATGCCCAGCATATCTAGCAGAGATGTTCAGCCTGTTGCCTATGAAGAGCCCA
AACACTGGTGTTCGATTGTGTACTATGAACTGAACAACCGTGTCGGGGAAGCTTTCCATGCGTC
TTCCACCAGTGTGTTAGTAGACGGGTTTACAGACCCTGCCAATAACAAGAGCCGCTTCTGCTTG
GGGCTGCTGTCCAACGTTAATCGCAACTCAACCATCGAGAACACCAGGCGGCACATCGGGAAAG
GTGTCCATCTATACTACGTTGGTGGGGAGGTGTATGCCGAGTGTCTTAGTGACAGCAGCATCTT
TGTTCAGAGTAGGAACTGCAACTTTCACCATGGCTTCCACCCCACCACCGTCTGTAAGATTCCC
AGCAGCTGCAGCCTCAAAATTTTTAACAATCAGGAGTTTGCTCAGCTTCTGGCTCAGTCAGTCA
ACCATGGGTTTGAGGCTGTGTATGAGCTCACCAAGATGTGTACCATTCGAATGAGTTTTGTCAA
GGGCTGGGGAGCAGAGTACCACCGACAGGATGTAACCAGTACTCCATGCTGGATTGAGATTCAC
CTCCATGGGCCTCTGCAGTGGCTGGATAAAGTCCTGACCCAGATGGGCTCTCCGCTGAACCCCA
TTTCTTCTGTTTCATAGTGCAGAAGTATTCTTTTCAATTATATTTTTAGTGGACTTGTTTTAAT
TTTAGAGGAATTTCCAGCACAGATACTGTGAGCTGACATGGAAAAACAGATATTATGGCTTATT
TTTTCTACGTAATTGTGACCAACACATTTGTATTTTATGATATTACATTTGTTTGTATTCGTGT
TCATTGTGATTAACTTTCAAAAGTATTGTAAACGACATAGAGTGTTTTGCCCCTGTTGAAAAGT
TCAGCAATGATCTTAAACTGGAGAGTGGTTCCTGTCCCAACAGTGTGTAACTTGTTAACTTTTA
CACGGTAGTGCCTCACAGAATGGAGTCGTATCCTTTAGAGAGCATGTATTGTGGGAAGGAGTAG
ACGACGTTGCTCTGGTAATCTCTTTACCCTACCACCTTTGAAAAAGCATATGTTGTTTTACAAA
AACTTAAAGTAGGGACTTACAGGAAACTATTGAATCTTATTTGAAGGACACTGCAGTCCTAACA
TGGTGTTCAGTGAAAGCAAGGTGGTAGATTTCTGGACGTCATACATTTACATTTAATATTGCTA
AGTGTTCGTCAGTGTAATGTGACTTCATGCTATATATCTTTTGTAAAACATTTCCTTTTAAAAA
AATCTCCAGTATTTGTCTTTACTCAAATTTGTCATAAGTTCCACGTAACATGAGTCACCGTGGC
TCTGCGGCCTTGTTCAGCTTCGTCTGCTGCTTTGGGCCGGTGTTTCAAGAGCTCCACTGTGCAC
CAGCCTTTTCACTTTGCACTTTTGTGGGTGACTGACTGTCTTAGTGTAACCATGGGTGACTGAC
TGTCTTAATGTAAAAGACTGTCGGGTGGCCTGGTCTTCCTTCCCCTTTGCTTCCTAGGCTCTCC
TTTGTACCATACTACCATTCAGAGTTGGCAGCTGTAGGTGGTGCTGCCTTCTCAAGCTGTAGTT
ATAATCTAGTTAGAATGCTGTCACTCTGTAGTTATAATCTAGTTAGAATGCTGTCACTCTGTAG
TTATAATCTAGTTAGAATGCTGTCACTCTGTAGTTACAATCTAGTTAGAATGCTGTCACTCTGT
AGTTACAATCTAGTTAGAATGCTGTCACTCTGTAGCTCCAGCTGAGGTGCCTGTTAACTCCCTA
GTGGTATGGGTGTTGTTGCTATTGAAAGATGGTGTGTGGACACCTTTGCTCTCTACCAAGCTTG
TCATACAAGGGCCGGCAACATAGCCATCAGAGCTCTTCAGTGGGCCCAGGAGTCAGGCTGTTGG
TGTAAATGAGTCACAGCAGGGCTGGGACGGTTTGTGTCACATGTCAGAGAGCAGAGTGTCTCTG
CGTCAGCGCTCTGCCTCTTTCTTTTATCCTTTTAGAACTACATGGGTGCTAATCTCCAGAACAC
TGTCAGGCGTGAACACTCTTAAGACACCCATTTAGTTCACTGTGCCTTGGCCATAGGACTTGTA
ACCACTTTCTAGGGAGCGGTTGGATGAACAGTTATGGCCTGAGAACGGAGACACTACTTTGACA
AAGAAAAGGGCCTACCTTGCCCATCAGAGTGAGAGAATTTATTTCCTGGTGCCTTTTGAAGATA
TGCAGAAGATATTCTCACTCTGCTGAGAATGCTATCTTGGCTTGACTTTCATAGTGCCCTTCCT
GCCTCTGTGAGGAAAACAGCTTCTTTGGAGGGTGGGGGTTCCTTTTGTTTTCTGTGTCATTATG
TATTGACTTTCAGAGTGTAGCCGTGGGGCGGCTTTGCTCCTTCCGAGGGGTGCCTTGCTGGCCT
TCAGTAGCTTGGGCTGTAAGCATAACTCTTCCACAGTGTGAGTGTGTCAGCCCCAGGAAAGAGA
TGGCCACTTCACACTGGAGCACAGAGGCTGTTCCTTGTTCCTGTACTTTGCAGGCTCTTGGCAG
CCTTTAAGAACAAGCTGGTAGGAATGTGTCTTGTTGAATGGCAGGGGATCCTTGTCTGTGATTT
CTGCTGAGGTCTGGAAACAGGTGCCTTGCTTGTTCCTTTGCCAACAGTGGGCTACATGTCGCTT
CTGCACAGTCATCACATCACAGGCCTCAGGCTTGCAGATCCTGTGTGATTGGCCGTCTGTGCAA
GTGGCAGGACTGAAGCTCTTAGCTGTTCTGAGTTTCATGGAGAAACCCCAGCCTGTTCTGCGGT
CTGTAAATGGGAGACTGTAGTGCCTGCTCCTGTACTGTCTAAGGATATACAGACGTCTGTGGGT
AGGAGAGTGTTGGGGAGAGAAAGACAGCAAGTGCGGATTCTTCCGCAGAGCAGAGAACAGGGAG
TAGGACCTCTGAAGAAGCTTCCCACCACACCAGACCCAGTGCTGGTTCAGTCTCTGTCCTGAGA
TGGCTCTCGTGGAGCCCAGGCTGGCCCTGAGCATGCTGAGTTGCAGATGGCGGCCATCAGTTCC
CCACCTCTGAAGTGCTAGGGTGACGGCCATGCACCATCATAGCCAGCTCCTGTGGTGCTGAGAC
CCAGCCTCAGACTTCGTGTGTGCTGGGCAAGTACTCTGCCAGCCCACCGACGTCCCTAGGTCAG
CACTCACACTTTTAGCAGACAAAATAAATTAATACCTGCCAGGGAAAAAGATAGGTTTGCAAAT
AATAATAAAGTTTGCCCTCAGTTGGATAAATGGAAGAAACAAATCTCAGCCATGAATTACAGCA
ACAAGGTGCTGCCTAGAGAGAGCAGAACCAAGAGGTGCGTTTGCTGATGTCACCAAACTGGATT
TAAGGGCTGTAAGTAGGCATGCTGTGGGCCTCCCAGAATTAGAGAAAATTGGAGGAGGAAATCA
GTTTTAAACAAGCAAAACCTGGGTAATGGTGGCGCCTGCCTTCAGTTCAGCACTCTGGAGGCAG
AGGCAGGCAGGTTTCTGAGGGCGACCTGGTCTGCAGAGCGACTTCTACACAGAGGAACTCTGTC
TTGGAGGAAAAAAAGAAAAGCAAAACAGTAAACAAACAGAACAGGATATGAATCGCACACACAA
TAACTTTCTATGTTCCATGGTTGCTGGTAAGAAGTAGTCAGGCGTGGCTGAGTCGCTAAGGTGA
GTCCAGGAGTAAGGTTGCTTAGGAGAACACTCGACAGTCCACACCAATGGTGCAGGGAGGAAGT
GTGCTGTTCTCGGGACGTTTGGCAGGTTAGACACCCTTCGGGGACGAGAATGGCAGTAACATTG
CAATGGGAAGTGAACTGTAAAAGTTGGGGGTTACCTCAGTCTCCCTGTTGCCTGAGAGGACTGT
GGGAAGCGTTTCCATCCCTGCCCATGGTGCCCATCGGAAGAGAGAGTGGATGAAGAAGTGAAGT
CTGGTTCAGGATACGCCTGTCAACGGTGTCATTTGTGCTCCTGCTGCGGAGAGCACCGAGTGGC
TCAGCTCTGTATCCTCCCATCTTGTTTGGTCACTTCCCTGGCAGCACTTGAGTCCCTGTCACTG
GTCTCTCTTAAAGTCCTGTCTCTTTGCTTCGAAGACTCTTAAAAGTTACTATTCTTTATTTCTT
TTTAAAAGTTGGTTGTTGTCTGGAGACACGGTCTCTCTGTACAGTCCTGGCTGGCCTGGAAGTT
ACTGTGTAGGCTAGCCTTGAGCTTGAAGTGATTCTCTTGCCGCTGCCTCTGGGTTCTGGGATCA
CAGGCGTACACCACCACGTACAGTGCCCTCTCATGACTTTTAGAATCCAGCCCCTGGTGACGGT
TTGGTTTTAGATCTGTTAGCTTTGTCTGAATTCCTCTTTGTCCTGCCGAGTAAATCCTCTGCTC
TCCTCAGCAGAAATGCGTGTTCTCGATACACACACAGCTAAATAGTGATGGTTTATAGGTGGCC
TCTGCTATTATGTAGAGCATCTTTTTTGAAAGTAATCTCCAGTTAGGTGGGCATTTCCCTCACA
GCAGTAGGATTTTCCCCTTTGGGAGAAACCAGTTATTAGAAGTTTTTCTTGTTAAAATAATGCT
CTTATGAGAAGAAAAATTAAGGCATTTGTTCTGCACTAACAGACTTCTATTTGATGGACACCTT
GGACAGGTCTGTGGACTTGGGTGGGTTCCAGCGTGCTGATAAGAAGGGTAACAGGATTTAATAG
TGTCCTCAGGCCTTGCGTTCCTGGGGCACTCAAGAAAGAGTTCATCACCCTGTCTAGGGCTGTA
GGTCAGCGGTAGAGACTTAGCAGGCATGAAGTCCAGTGTGCAGTGCCCAGCACTGTACAAAACT
CGGGACACACCTACAACTGGATGGTATGCCAGACGCACAGAGGAAATGCACAGCGATGTGTTTA
AAACGCAAGAATGAATACACGTTAGAACATTGAGCTGGTGATGGTGGCTGTTTAGTAATGACCT
CTTCCCCAGCAAAGAGCGTCCAAGAGCAGAGTGTCCCCAGCAGAGAGAAGGCATTGGTGTACTT
GTCCAGGTAACTTAGGTTTTAAATCAGCATAAGTAGTTATTCTTTAAGGATTTGTTTGAAGTTG
CTCTTTTTGAGAAGTTGAGAGTTTTGTGTGCAGCTGGGCACATGCTTGCCCCGCCCTGCCTTAA
ACCATGACTTTCCTACTGTGAACCGGTGTCAGCCACACCAACACTCCAGGTAGGCCTGAGAGTC
CCGAGCCCTTTCGAAGAAGGAAGGTCTTGAAGAGCGGCTGTGCTCTTGCGCTACCGTTGGCTGA
GCTGCTGCTTGGCCGAGTCGTAGGCATGGCGGTTGGGCACTGTGCTCTCTACGCGGCCAGCTGC
AGTGTGCCCTCCCCGAGGACGATACTTCACATGAGGATGTGGAGCCGAGGGATGGCCGCACCGC
AAGTCTGCTCACAAGTACTGGTTCTGCTTTCTTCACGTCCTAGAAGACTAAACTAGCAGTGTGC
TTCAGCCCTGCTACCTTTTGATACATATAAAAATGTACTAGGTTTTACTATATACTGTGCTTCT
CAAAGCCATAACTCTTAAGAAACTTGTTTTTGCATATTGTTTGCTAATACTTTGTTTTAATAAA
CTTCAAAGGCTGCTCA

hide sequence

RefSeq Acc Id:

XM_006253587 ⟹ XP_006253649

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	7,867,640 - 7,896,983 (-)	NCBI
mRatBN7.2	17	7,862,332 - 7,891,678 (-)	NCBI
Rnor_6.0	17	8,307,448 - 8,336,996 (-)	NCBI
Rnor_5.0	17	10,484,309 - 10,513,839 (-)	NCBI

Sequence:

show sequence

TCCGGGTCCCCGGCGAGCGGGCGCCGAGCGCTTGTCCGGCAGCCGAGCTGCTAATAAAGTTGCG
GCGCGTGCACAGCGCGGCGACGGCGTGAGGAGAGCGCGCCCGGGCGGCTGGGAGGTGCCTGTGG
AGGAGGACAGAGACGTCTGCCATATCTTCAGGAGCTGGAGGAGTTTGTGACCCATCTGATTTGG
GTGTCGGAATCCTGGGCAAGGGCACCTTCGAGTCATCTTTTTTAACCTCTGAGCTGTCATTCCC
ATCCTAAGATGCCTGTGAAGAATTTTGGAGAAAAAATGGACTTGTCCTAATGAAGAAGCATATG
GGATCCTTAAAGTTAAATGTCACTCCCCCTCCACTGGGACCTTGTGCTTGAGGCCTGCATGTGA
CTCTTCTCCTGTGATTCTGCTTTTCGTGTCTACTGACTTTGATTACAGGAAAGGCTCTGACGAT
TCGTATCAAATGACGTCAATGGCCAGCCTGTTTTCTTTCACTAGTCCAGCCGTGAAGCGATTGT
TGGGCTGGAAACAAGGTGATGAGGAAGAGAAATGGGCAGAAAAGGCCGTGGATGCTTTAGTGAA
AAAGCTGAAGAAGAAGAAGGGCGCCATGGAGGAGTTGGAGAAAGCCTTGAGCAGCCCAGGACAG
CCAAGCAAGTGTGTCACTATCCCCAGGTCCTTGGACGGCCGTTTGCAAGTCTCTCACAGGAAAG
GCTTGCCCCACGTTATATATTGCCGTGTTTGGCGCTGGCCGGATTTGCAGAGCCATCATGAGCT
AAAGCCTTTGGATATTTGTGAGTTTCCTTTTGGATCGAAGCAAAAAGAAGTTTGTATCAATCCA
TACCACTATAAGAGAGTGGAGAGTCCAGTCTTACCTCCAGTGTTAGTGCCTCGTCACAACGAAT
TCAATCCCCAGCACAGCCTTCTGGTTCAGTTCAGGAACCTGAGCCACAATGAGCCGCACATGCC
CCAGAATGCCACGTTTCCTGATTCCTTCCACCAGCCCAACAGCACTCCTTTCCCCTTATCTCCT
AACAGCCCCTATCCTCCTTCCCCTGCTAGCAGCACATATCCCAACTCCCCTGCAAGCTCCGGAC
CAGGAAGTCCATTTCAACTCCCAGCTGATACCCCTCCCCCTGCCTATATGCCACCTGACGATCA
GATGGGTCAGGATAACTCCCAGCCTATGGACACAAGCAACAACATGATTCCTCAGATCATGCCC
AGCATATCTAGCAGAGATGTTCAGCCTGTTGCCTATGAAGAGCCCAAACACTGGTGTTCGATTG
TGTACTATGAACTGAACAACCGTGTCGGGGAAGCTTTCCATGCGTCTTCCACCAGTGTGTTAGT
AGACGGGTTTACAGACCCTGCCAATAACAAGAGCCGCTTCTGCTTGGGGCTGCTGTCCAACGTT
AATCGCAACTCAACCATCGAGAACACCAGGCGGCACATCGGGAAAGGTGTCCATCTATACTACG
TTGGTGGGGAGGTGTATGCCGAGTGTCTTAGTGACAGCAGCATCTTTGTTCAGAGTAGGAACTG
CAACTTTCACCATGGCTTCCACCCCACCACCGTCTGTAAGATTCCCAGCAGCTGCAGCCTCAAA
ATTTTTAACAATCAGGAGTTTGCTCAGCTTCTGGCTCAGTCAGTCAACCATGGGTTTGAGGCTG
TGTATGAGCTCACCAAGATGTGTACCATTCGAATGAGTTTTGTCAAGGGCTGGGGAGCAGAGTA
CCACCGACAGGATGTAACCAGTACTCCATGCTGGATTGAGATTCACCTCCATGGGCCTCTGCAG
TGGCTGGATAAAGTCCTGACCCAGATGGGCTCTCCGCTGAACCCCATTTCTTCTGTTTCATAGT
GCAGAAGTATTCTTTTCAATTATATTTTTAGTGGACTTGTTTTAATTTTAGAGGAATTTCCAGC
ACAGATACTGTGAGCTGACATGGAAAAACAGATATTATGGCTTATTTTTTCTACGTAATTGTGA
CCAACACATTTGTATTTTATGATATTACATTTGTTTGTATTCGTGTTCATTGTGATTAACTTTC
AAAAGTATTGTAAACGACATAGAGTGTTTTGCCCCTGTTGAAAAGTTCAGCAATGATCTTAAAC
TGGAGAGTGGTTCCTGTCCCAACAGTGTGTAACTTGTTAACTTTTACACGGTAGTGCCTCACAG
AATGGAGTCGTATCCTTTAGAGAGCATGTATTGTGGGAAGGAGTAGACGACGTTGCTCTGGTAA
TCTCTTTACCCTACCACCTTTGAAAAAGCATATGTTGTTTTACAAAAACTTAAAGTAGGGACTT
ACAGGAAACTATTGAATCTTATTTGAAGGACACTGCAGTCCTAACATGGTGTTCAGTGAAAGCA
AGGTGGTAGATTTCTGGACGTCATACATTTACATTTAATATTGCTAAGTGTTCGTCAGTGTAAT
GTGACTTCATGCTATATATCTTTTGTAAAACATTTCCTTTTAAAAAAATCTCCAGTATTTGTCT
TTACTCAAATTTGTCATAAGTTCCACGTAACATGAGTCACCGTGGCTCTGCGGCCTTGTTCAGC
TTCGTCTGCTGCTTTGGGCCGGTGTTTCAAGAGCTCCACTGTGCACCAGCCTTTTCACTTTGCA
CTTTTGTGGGTGACTGACTGTCTTAGTGTAACCATGGGTGACTGACTGTCTTAATGTAAAAGAC
TGTCGGGTGGCCTGGTCTTCCTTCCCCTTTGCTTCCTAGGCTCTCCTTTGTACCATACTACCAT
TCAGAGTTGGCAGCTGTAGGTGGTGCTGCCTTCTCAAGCTGTAGTTATAATCTAGTTAGAATGC
TGTCACTCTGTAGTTATAATCTAGTTAGAATGCTGTCACTCTGTAGTTATAATCTAGTTAGAAT
GCTGTCACTCTGTAGTTACAATCTAGTTAGAATGCTGTCACTCTGTAGTTACAATCTAGTTAGA
ATGCTGTCACTCTGTAGCTCCAGCTGAGGTGCCTGTTAACTCCCTAGTGGTATGGGTGTTGTTG
CTATTGAAAGATGGTGTGTGGACACCTTTGCTCTCTACCAAGCTTGTCATACAAGGGCCGGCAA
CATAGCCATCAGAGCTCTTCAGTGGGCCCAGGAGTCAGGCTGTTGGTGTAAATGAGTCACAGCA
GGGCTGGGACGGTTTGTGTCACATGTCAGAGAGCAGAGTGTCTCTGCGTCAGCGCTCTGCCTCT
TTCTTTTATCCTTTTAGAACTACATGGGTGCTAATCTCCAGAACACTGTCAGGCGTGAACACTC
TTAAGACACCCATTTAGTTCACTGTGCCTTGGCCATAGGACTTGTAACCACTTTCTAGGGAGCG
GTTGGATGAACAGTTATGGCCTGAGAACGGAGACACTACTTTGACAAAGAAAAGGGCCTACCTT
GCCCATCAGAGTGAGAGAATTTATTTCCTGGTGCCTTTTGAAGATATGCAGAAGATATTCTCAC
TCTGCTGAGAATGCTATCTTGGCTTGACTTTCATAGTGCCCTTCCTGCCTCTGTGAGGAAAACA
GCTTCTTTGGAGGGTGGGGGTTCCTTTTGTTTTCTGTGTCATTATGTATTGACTTTCAGAGTGT
AGCCGTGGGGCGGCTTTGCTCCTTCCGAGGGGTGCCTTGCTGGCCTTCAGTAGCTTGGGCTGTA
AGCATAACTCTTCCACAGTGTGAGTGTGTCAGCCCCAGGAAAGAGATGGCCACTTCACACTGGA
GCACAGAGGCTGTTCCTTGTTCCTGTACTTTGCAGGCTCTTGGCAGCCTTTAAGAACAAGCTGG
TAGGAATGTGTCTTGTTGAATGGCAGGGGATCCTTGTCTGTGATTTCTGCTGAGGTCTGGAAAC
AGGTGCCTTGCTTGTTCCTTTGCCAACAGTGGGCTACATGTCGCTTCTGCACAGTCATCACATC
ACAGGCCTCAGGCTTGCAGATCCTGTGTGATTGGCCGTCTGTGCAAGTGGCAGGACTGAAGCTC
TTAGCTGTTCTGAGTTTCATGGAGAAACCCCAGCCTGTTCTGCGGTCTGTAAATGGGAGACTGT
AGTGCCTGCTCCTGTACTGTCTAAGGATATACAGACGTCTGTGGGTAGGAGAGTGTTGGGGAGA
GAAAGACAGCAAGTGCGGATTCTTCCGCAGAGCAGAGAACAGGGAGTAGGACCTCTGAAGAAGC
TTCCCACCACACCAGACCCAGTGCTGGTTCAGTCTCTGTCCTGAGATGGCTCTCGTGGAGCCCA
GGCTGGCCCTGAGCATGCTGAGTTGCAGATGGCGGCCATCAGTTCCCCACCTCTGAAGTGCTAG
GGTGACGGCCATGCACCATCATAGCCAGCTCCTGTGGTGCTGAGACCCAGCCTCAGACTTCGTG
TGTGCTGGGCAAGTACTCTGCCAGCCCACCGACGTCCCTAGGTCAGCACTCACACTTTTAGCAG
ACAAAATAAATTAATACCTGCCAGGGAAAAAGATAGGTTTGCAAATAATAATAAAGTTTGCCCT
CAGTTGGATAAATGGAAGAAACAAATCTCAGCCATGAATTACAGCAACAAGGTGCTGCCTAGAG
AGAGCAGAACCAAGAGGTGCGTTTGCTGATGTCACCAAACTGGATTTAAGGGCTGTAAGTAGGC
ATGCTGTGGGCCTCCCAGAATTAGAGAAAATTGGAGGAGGAAATCAGTTTTAAACAAGCAAAAC
CTGGGTAATGGTGGCGCCTGCCTTCAGTTCAGCACTCTGGAGGCAGAGGCAGGCAGGTTTCTGA
GGGCGACCTGGTCTGCAGAGCGACTTCTACACAGAGGAACTCTGTCTTGGAGGAAAAAAAGAAA
AGCAAAACAGTAAACAAACAGAACAGGATATGAATCGCACACACAATAACTTTCTATGTTCCAT
GGTTGCTGGTAAGAAGTAGTCAGGCGTGGCTGAGTCGCTAAGGTGAGTCCAGGAGTAAGGTTGC
TTAGGAGAACACTCGACAGTCCACACCAATGGTGCAGGGAGGAAGTGTGCTGTTCTCGGGACGT
TTGGCAGGTTAGACACCCTTCGGGGACGAGAATGGCAGTAACATTGCAATGGGAAGTGAACTGT
AAAAGTTGGGGGTTACCTCAGTCTCCCTGTTGCCTGAGAGGACTGTGGGAAGCGTTTCCATCCC
TGCCCATGGTGCCCATCGGAAGAGAGAGTGGATGAAGAAGTGAAGTCTGGTTCAGGATACGCCT
GTCAACGGTGTCATTTGTGCTCCTGCTGCGGAGAGCACCGAGTGGCTCAGCTCTGTATCCTCCC
ATCTTGTTTGGTCACTTCCCTGGCAGCACTTGAGTCCCTGTCACTGGTCTCTCTTAAAGTCCTG
TCTCTTTGCTTCGAAGACTCTTAAAAGTTACTATTCTTTATTTCTTTTTAAAAGTTGGTTGTTG
TCTGGAGACACGGTCTCTCTGTACAGTCCTGGCTGGCCTGGAAGTTACTGTGTAGGCTAGCCTT
GAGCTTGAAGTGATTCTCTTGCCGCTGCCTCTGGGTTCTGGGATCACAGGCGTACACCACCACG
TACAGTGCCCTCTCATGACTTTTAGAATCCAGCCCCTGGTGACGGTTTGGTTTTAGATCTGTTA
GCTTTGTCTGAATTCCTCTTTGTCCTGCCGAGTAAATCCTCTGCTCTCCTCAGCAGAAATGCGT
GTTCTCGATACACACACAGCTAAATAGTGATGGTTTATAGGTGGCCTCTGCTATTATGTAGAGC
ATCTTTTTTGAAAGTAATCTCCAGTTAGGTGGGCATTTCCCTCACAGCAGTAGGATTTTCCCCT
TTGGGAGAAACCAGTTATTAGAAGTTTTTCTTGTTAAAATAATGCTCTTATGAGAAGAAAAATT
AAGGCATTTGTTCTGCACTAACAGACTTCTATTTGATGGACACCTTGGACAGGTCTGTGGACTT
GGGTGGGTTCCAGCGTGCTGATAAGAAGGGTAACAGGATTTAATAGTGTCCTCAGGCCTTGCGT
TCCTGGGGCACTCAAGAAAGAGTTCATCACCCTGTCTAGGGCTGTAGGTCAGCGGTAGAGACTT
AGCAGGCATGAAGTCCAGTGTGCAGTGCCCAGCACTGTACAAAACTCGGGACACACCTACAACT
GGATGGTATGCCAGACGCACAGAGGAAATGCACAGCGATGTGTTTAAAACGCAAGAATGAATAC
ACGTTAGAACATTGAGCTGGTGATGGTGGCTGTTTAGTAATGACCTCTTCCCCAGCAAAGAGCG
TCCAAGAGCAGAGTGTCCCCAGCAGAGAGAAGGCATTGGTGTACTTGTCCAGGTAACTTAGGTT
TTAAATCAGCATAAGTAGTTATTCTTTAAGGATTTGTTTGAAGTTGCTCTTTTTGAGAAGTTGA
GAGTTTTGTGTGCAGCTGGGCACATGCTTGCCCCGCCCTGCCTTAAACCATGACTTTCCTACTG
TGAACCGGTGTCAGCCACACCAACACTCCAGGTAGGCCTGAGAGTCCCGAGCCCTTTCGAAGAA
GGAAGGTCTTGAAGAGCGGCTGTGCTCTTGCGCTACCGTTGGCTGAGCTGCTGCTTGGCCGAGT
CGTAGGCATGGCGGTTGGGCACTGTGCTCTCTACGCGGCCAGCTGCAGTGTGCCCTCCCCGAGG
ACGATACTTCACATGAGGATGTGGAGCCGAGGGATGGCCGCACCGCAAGTCTGCTCACAAGTAC
TGGTTCTGCTTTCTTCACGTCCTAGAAGACTAAACTAGCAGTGTGCTTCAGCCCTGCTACCTTT
TGATACATATAAAAATGTACTAGGTTTTACTATATACTGTGCTTCTCAAAGCCATAACTCTTAA
GAAACTTGTTTTTGCATATTGTTTGCTAATACTTTGTTTTAATAAACTTCAAAGGCTGCTCA

hide sequence

RefSeq Acc Id:

XM_006253588 ⟹ XP_006253650

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	7,867,640 - 7,896,812 (-)	NCBI
mRatBN7.2	17	7,862,333 - 7,891,288 (-)	NCBI
Rnor_6.0	17	8,307,448 - 8,336,851 (-)	NCBI
Rnor_5.0	17	10,484,309 - 10,513,839 (-)	NCBI

Sequence:

show sequence

TCCGGGCCGGGCGGAGGGACACGCGCGGCTGAAGCGGCCGGCGTGCGGGCGGAGGCCTACGGGT
CCCCGCGCGGGACGGGACGGGGCGCCGGCGAGGCCCGGGTGCTGAGGAGGCCCCGCGAGGCGGA
CGAGGCCGCTGCCACCTCGGCGCGCCACCGACGCCCCAGCCCACGGAGCCGCGCAGGCGGCCTA
GGCCGAGTGCGCGCCCCGCCGCTTTGTGTCTGCGAGATAAGGATCGGCGCTTATCGGTGGGAAT
TACACTCCGGCCCGCGGCGACCCGCCCCTGCGCCCGCCGGTCCGACCCACCGCCGTTCTGGGGA
CGCCGCCGAGGCTCTGGCGCTGCGCTAAACTTAGTAGTTGTGTGAAGAGTTAGATCTGTGACTC
TAGAGGAGCTGTGGGCACCTGCTCTGTTGGAGCTTTCCTGCCGACAGTCCTAGGTGCCTGTGGA
GGAGGACAGAGACGTCTGCCATATCTTCAGGAGCTGGAGGAGTTTGTGACCCATCTGATTTGGG
TGTCGGAATCCTGGGCAAGGGCACCTTCGAGTCATCTTTTTTAACCTCTGAGCTGTCATTCCCA
TCCTAAGATGCCTGTGAAGAATTTTGGAGAAAAAATGGACTTGTCCTAATGAAGAAGCATATGG
GATCCTTAAAGTTAAATGTCACTCCCCCTCCACTGGGACCTTGTGCTTGAGGCCTGCATGTGAC
TCTTCTCCTGTGATTCTGCTTTTCGTGTCTACTGACTTTGATTACAGGAAAGGCTCTGACGATT
CGTATCAAATGACGTCAATGGCCAGCCTGTTTTCTTTCACTAGTCCAGCCGTGAAGCGATTGTT
GGGCTGGAAACAAGGTGATGAGGAAGAGAAATGGGCAGAAAAGGCCGTGGATGCTTTAGTGAAA
AAGCTGAAGAAGAAGAAGGGCGCCATGGAGGAGTTGGAGAAAGCCTTGAGCAGCCCAGGACAGC
CAAGCAAGTGTGTCACTATCCCCAGGTCCTTGGACGGCCGTTTGCAAGTCTCTCACAGGAAAGG
CTTGCCCCACGTTATATATTGCCGTGTTTGGCGCTGGCCGGATTTGCAGAGCCATCATGAGCTA
AAGCCTTTGGATATTTGTGAGTTTCCTTTTGGATCGAAGCAAAAAGAAGTTTGTATCAATCCAT
ACCACTATAAGAGAGTGGAGAGTCCAGTCTTACCTCCAGTGTTAGTGCCTCGTCACAACGAATT
CAATCCCCAGCACAGCCTTCTGGTTCAGTTCAGGAACCTGAGCCACAATGAGCCGCACATGCCC
CAGAATGCCACGTTTCCTGATTCCTTCCACCAGCCCAACAGCACTCCTTTCCCCTTATCTCCTA
ACAGCCCCTATCCTCCTTCCCCTGCTAGCAGCACATATCCCAACTCCCCTGCAAGCTCCGGACC
AGGAAGTCCATTTCAACTCCCAGCTGATACCCCTCCCCCTGCCTATATGCCACCTGACGATCAG
ATGGGTCAGGATAACTCCCAGCCTATGGACACAAGCAACAACATGATTCCTCAGATCATGCCCA
GCATATCTAGCAGAGATGTTCAGCCTGTTGCCTATGAAGAGCCCAAACACTGGTGTTCGATTGT
GTACTATGAACTGAACAACCGTGTCGGGGAAGCTTTCCATGCGTCTTCCACCAGTGTGTTAGTA
GACGGGTTTACAGACCCTGCCAATAACAAGAGCCGCTTCTGCTTGGGGCTGCTGTCCAACGTTA
ATCGCAACTCAACCATCGAGAACACCAGGCGGCACATCGGGAAAGGTGTCCATCTATACTACGT
TGGTGGGGAGGTGTATGCCGAGTGTCTTAGTGACAGCAGCATCTTTGTTCAGAGTAGGAACTGC
AACTTTCACCATGGCTTCCACCCCACCACCGTCTGTAAGATTCCCAGCAGCTGCAGCCTCAAAA
TTTTTAACAATCAGGAGTTTGCTCAGCTTCTGGCTCAGTCAGTCAACCATGGGTTTGAGGCTGT
GTATGAGCTCACCAAGATGTGTACCATTCGAATGAGTTTTGTCAAGGGCTGGGGAGCAGAGTAC
CACCGACAGGATGTAACCAGTACTCCATGCTGGATTGAGATTCACCTCCATGGGCCTCTGCAGT
GGCTGGATAAAGTCCTGACCCAGATGGGCTCTCCGCTGAACCCCATTTCTTCTGTTTCATAGTG
CAGAAGTATTCTTTTCAATTATATTTTTAGTGGACTTGTTTTAATTTTAGAGGAATTTCCAGCA
CAGATACTGTGAGCTGACATGGAAAAACAGATATTATGGCTTATTTTTTCTACGTAATTGTGAC
CAACACATTTGTATTTTATGATATTACATTTGTTTGTATTCGTGTTCATTGTGATTAACTTTCA
AAAGTATTGTAAACGACATAGAGTGTTTTGCCCCTGTTGAAAAGTTCAGCAATGATCTTAAACT
GGAGAGTGGTTCCTGTCCCAACAGTGTGTAACTTGTTAACTTTTACACGGTAGTGCCTCACAGA
ATGGAGTCGTATCCTTTAGAGAGCATGTATTGTGGGAAGGAGTAGACGACGTTGCTCTGGTAAT
CTCTTTACCCTACCACCTTTGAAAAAGCATATGTTGTTTTACAAAAACTTAAAGTAGGGACTTA
CAGGAAACTATTGAATCTTATTTGAAGGACACTGCAGTCCTAACATGGTGTTCAGTGAAAGCAA
GGTGGTAGATTTCTGGACGTCATACATTTACATTTAATATTGCTAAGTGTTCGTCAGTGTAATG
TGACTTCATGCTATATATCTTTTGTAAAACATTTCCTTTTAAAAAAATCTCCAGTATTTGTCTT
TACTCAAATTTGTCATAAGTTCCACGTAACATGAGTCACCGTGGCTCTGCGGCCTTGTTCAGCT
TCGTCTGCTGCTTTGGGCCGGTGTTTCAAGAGCTCCACTGTGCACCAGCCTTTTCACTTTGCAC
TTTTGTGGGTGACTGACTGTCTTAGTGTAACCATGGGTGACTGACTGTCTTAATGTAAAAGACT
GTCGGGTGGCCTGGTCTTCCTTCCCCTTTGCTTCCTAGGCTCTCCTTTGTACCATACTACCATT
CAGAGTTGGCAGCTGTAGGTGGTGCTGCCTTCTCAAGCTGTAGTTATAATCTAGTTAGAATGCT
GTCACTCTGTAGTTATAATCTAGTTAGAATGCTGTCACTCTGTAGTTATAATCTAGTTAGAATG
CTGTCACTCTGTAGTTACAATCTAGTTAGAATGCTGTCACTCTGTAGTTACAATCTAGTTAGAA
TGCTGTCACTCTGTAGCTCCAGCTGAGGTGCCTGTTAACTCCCTAGTGGTATGGGTGTTGTTGC
TATTGAAAGATGGTGTGTGGACACCTTTGCTCTCTACCAAGCTTGTCATACAAGGGCCGGCAAC
ATAGCCATCAGAGCTCTTCAGTGGGCCCAGGAGTCAGGCTGTTGGTGTAAATGAGTCACAGCAG
GGCTGGGACGGTTTGTGTCACATGTCAGAGAGCAGAGTGTCTCTGCGTCAGCGCTCTGCCTCTT
TCTTTTATCCTTTTAGAACTACATGGGTGCTAATCTCCAGAACACTGTCAGGCGTGAACACTCT
TAAGACACCCATTTAGTTCACTGTGCCTTGGCCATAGGACTTGTAACCACTTTCTAGGGAGCGG
TTGGATGAACAGTTATGGCCTGAGAACGGAGACACTACTTTGACAAAGAAAAGGGCCTACCTTG
CCCATCAGAGTGAGAGAATTTATTTCCTGGTGCCTTTTGAAGATATGCAGAAGATATTCTCACT
CTGCTGAGAATGCTATCTTGGCTTGACTTTCATAGTGCCCTTCCTGCCTCTGTGAGGAAAACAG
CTTCTTTGGAGGGTGGGGGTTCCTTTTGTTTTCTGTGTCATTATGTATTGACTTTCAGAGTGTA
GCCGTGGGGCGGCTTTGCTCCTTCCGAGGGGTGCCTTGCTGGCCTTCAGTAGCTTGGGCTGTAA
GCATAACTCTTCCACAGTGTGAGTGTGTCAGCCCCAGGAAAGAGATGGCCACTTCACACTGGAG
CACAGAGGCTGTTCCTTGTTCCTGTACTTTGCAGGCTCTTGGCAGCCTTTAAGAACAAGCTGGT
AGGAATGTGTCTTGTTGAATGGCAGGGGATCCTTGTCTGTGATTTCTGCTGAGGTCTGGAAACA
GGTGCCTTGCTTGTTCCTTTGCCAACAGTGGGCTACATGTCGCTTCTGCACAGTCATCACATCA
CAGGCCTCAGGCTTGCAGATCCTGTGTGATTGGCCGTCTGTGCAAGTGGCAGGACTGAAGCTCT
TAGCTGTTCTGAGTTTCATGGAGAAACCCCAGCCTGTTCTGCGGTCTGTAAATGGGAGACTGTA
GTGCCTGCTCCTGTACTGTCTAAGGATATACAGACGTCTGTGGGTAGGAGAGTGTTGGGGAGAG
AAAGACAGCAAGTGCGGATTCTTCCGCAGAGCAGAGAACAGGGAGTAGGACCTCTGAAGAAGCT
TCCCACCACACCAGACCCAGTGCTGGTTCAGTCTCTGTCCTGAGATGGCTCTCGTGGAGCCCAG
GCTGGCCCTGAGCATGCTGAGTTGCAGATGGCGGCCATCAGTTCCCCACCTCTGAAGTGCTAGG
GTGACGGCCATGCACCATCATAGCCAGCTCCTGTGGTGCTGAGACCCAGCCTCAGACTTCGTGT
GTGCTGGGCAAGTACTCTGCCAGCCCACCGACGTCCCTAGGTCAGCACTCACACTTTTAGCAGA
CAAAATAAATTAATACCTGCCAGGGAAAAAGATAGGTTTGCAAATAATAATAAAGTTTGCCCTC
AGTTGGATAAATGGAAGAAACAAATCTCAGCCATGAATTACAGCAACAAGGTGCTGCCTAGAGA
GAGCAGAACCAAGAGGTGCGTTTGCTGATGTCACCAAACTGGATTTAAGGGCTGTAAGTAGGCA
TGCTGTGGGCCTCCCAGAATTAGAGAAAATTGGAGGAGGAAATCAGTTTTAAACAAGCAAAACC
TGGGTAATGGTGGCGCCTGCCTTCAGTTCAGCACTCTGGAGGCAGAGGCAGGCAGGTTTCTGAG
GGCGACCTGGTCTGCAGAGCGACTTCTACACAGAGGAACTCTGTCTTGGAGGAAAAAAAGAAAA
GCAAAACAGTAAACAAACAGAACAGGATATGAATCGCACACACAATAACTTTCTATGTTCCATG
GTTGCTGGTAAGAAGTAGTCAGGCGTGGCTGAGTCGCTAAGGTGAGTCCAGGAGTAAGGTTGCT
TAGGAGAACACTCGACAGTCCACACCAATGGTGCAGGGAGGAAGTGTGCTGTTCTCGGGACGTT
TGGCAGGTTAGACACCCTTCGGGGACGAGAATGGCAGTAACATTGCAATGGGAAGTGAACTGTA
AAAGTTGGGGGTTACCTCAGTCTCCCTGTTGCCTGAGAGGACTGTGGGAAGCGTTTCCATCCCT
GCCCATGGTGCCCATCGGAAGAGAGAGTGGATGAAGAAGTGAAGTCTGGTTCAGGATACGCCTG
TCAACGGTGTCATTTGTGCTCCTGCTGCGGAGAGCACCGAGTGGCTCAGCTCTGTATCCTCCCA
TCTTGTTTGGTCACTTCCCTGGCAGCACTTGAGTCCCTGTCACTGGTCTCTCTTAAAGTCCTGT
CTCTTTGCTTCGAAGACTCTTAAAAGTTACTATTCTTTATTTCTTTTTAAAAGTTGGTTGTTGT
CTGGAGACACGGTCTCTCTGTACAGTCCTGGCTGGCCTGGAAGTTACTGTGTAGGCTAGCCTTG
AGCTTGAAGTGATTCTCTTGCCGCTGCCTCTGGGTTCTGGGATCACAGGCGTACACCACCACGT
ACAGTGCCCTCTCATGACTTTTAGAATCCAGCCCCTGGTGACGGTTTGGTTTTAGATCTGTTAG
CTTTGTCTGAATTCCTCTTTGTCCTGCCGAGTAAATCCTCTGCTCTCCTCAGCAGAAATGCGTG
TTCTCGATACACACACAGCTAAATAGTGATGGTTTATAGGTGGCCTCTGCTATTATGTAGAGCA
TCTTTTTTGAAAGTAATCTCCAGTTAGGTGGGCATTTCCCTCACAGCAGTAGGATTTTCCCCTT
TGGGAGAAACCAGTTATTAGAAGTTTTTCTTGTTAAAATAATGCTCTTATGAGAAGAAAAATTA
AGGCATTTGTTCTGCACTAACAGACTTCTATTTGATGGACACCTTGGACAGGTCTGTGGACTTG
GGTGGGTTCCAGCGTGCTGATAAGAAGGGTAACAGGATTTAATAGTGTCCTCAGGCCTTGCGTT
CCTGGGGCACTCAAGAAAGAGTTCATCACCCTGTCTAGGGCTGTAGGTCAGCGGTAGAGACTTA
GCAGGCATGAAGTCCAGTGTGCAGTGCCCAGCACTGTACAAAACTCGGGACACACCTACAACTG
GATGGTATGCCAGACGCACAGAGGAAATGCACAGCGATGTGTTTAAAACGCAAGAATGAATACA
CGTTAGAACATTGAGCTGGTGATGGTGGCTGTTTAGTAATGACCTCTTCCCCAGCAAAGAGCGT
CCAAGAGCAGAGTGTCCCCAGCAGAGAGAAGGCATTGGTGTACTTGTCCAGGTAACTTAGGTTT
TAAATCAGCATAAGTAGTTATTCTTTAAGGATTTGTTTGAAGTTGCTCTTTTTGAGAAGTTGAG
AGTTTTGTGTGCAGCTGGGCACATGCTTGCCCCGCCCTGCCTTAAACCATGACTTTCCTACTGT
GAACCGGTGTCAGCCACACCAACACTCCAGGTAGGCCTGAGAGTCCCGAGCCCTTTCGAAGAAG
GAAGGTCTTGAAGAGCGGCTGTGCTCTTGCGCTACCGTTGGCTGAGCTGCTGCTTGGCCGAGTC
GTAGGCATGGCGGTTGGGCACTGTGCTCTCTACGCGGCCAGCTGCAGTGTGCCCTCCCCGAGGA
CGATACTTCACATGAGGATGTGGAGCCGAGGGATGGCCGCACCGCAAGTCTGCTCACAAGTACT
GGTTCTGCTTTCTTCACGTCCTAGAAGACTAAACTAGCAGTGTGCTTCAGCCCTGCTACCTTTT
GATACATATAAAAATGTACTAGGTTTTACTATATACTGTGCTTCTCAAAGCCATAACTCTTAAG
AAACTTGTTTTTGCATATTGTTTGCTAATACTTTGTTTTAATAAACTTCAAAGGCTGCTCA

hide sequence

RefSeq Acc Id:

XM_017600658 ⟹ XP_017456147

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	7,867,640 - 7,896,812 (-)	NCBI
mRatBN7.2	17	7,862,333 - 7,891,286 (-)	NCBI
Rnor_6.0	17	8,307,448 - 8,336,851 (-)	NCBI

Sequence:

show sequence

TCCGGGCCGGGCGGAGGGACACGCGCGGCTGAAGCGGCCGGCGTGCGGGCGGAGGCCTACGGGT
CCCCGCGCGGGACGGGACGGGGCGCCGGCGAGGCCCGGGTGCTGAGGAGGCCCCGCGAGGCGGA
CGAGGCCGCTGCCACCTCGGCGCGCCACCGACGCCCCAGCCCACGGAGCCGCGCAGGCGGCCTA
GGCCGAGTGCGCGCCCCGCCGCTTTGTGTCTGCGAGATAAGGATCGGCGCTTATCGGTGGGAAT
TACACTCCGGCCCGCGGCGACCCGCCCCTGCGCCCGCCGGTCCGACCCACCGCCGTTCTGGGGA
CGCCGCCGAGGCTCTGGCGCTGCGCTAAACTTAGTGTGCCTGTGGAGGAGGACAGAGACGTCTG
CCATATCTTCAGGAGCTGGAGGAGTTTGTGACCCATCTGATTTGGGTGTCGGAATCCTGGGCAA
GGGCACCTTCGAGTCATCTTTTTTAACCTCTGAGCTGTCATTCCCATCCTAAGATGCCTGTGAA
GAATTTTGGAGAAAAAATGGACTTGTCCTAATGAAGAAGCATATGGGATCCTTAAAGTTAAATG
TCACTCCCCCTCCACTGGGACCTTGTGCTTGAGGCCTGCATGTGACTCTTCTCCTGTGATTCTG
CTTTTCGTGTCTACTGACTTTGATTACAGGAAAGGCTCTGACGATTCGTATCAAATGACGTCAA
TGGCCAGCCTGTTTTCTTTCACTAGTCCAGCCGTGAAGCGATTGTTGGGCTGGAAACAAGGTGA
TGAGGAAGAGAAATGGGCAGAAAAGGCCGTGGATGCTTTAGTGAAAAAGCTGAAGAAGAAGAAG
GGCGCCATGGAGGAGTTGGAGAAAGCCTTGAGCAGCCCAGGACAGCCAAGCAAGTGTGTCACTA
TCCCCAGGTCCTTGGACGGCCGTTTGCAAGTCTCTCACAGGAAAGGCTTGCCCCACGTTATATA
TTGCCGTGTTTGGCGCTGGCCGGATTTGCAGAGCCATCATGAGCTAAAGCCTTTGGATATTTGT
GAGTTTCCTTTTGGATCGAAGCAAAAAGAAGTTTGTATCAATCCATACCACTATAAGAGAGTGG
AGAGTCCAGTCTTACCTCCAGTGTTAGTGCCTCGTCACAACGAATTCAATCCCCAGCACAGCCT
TCTGGTTCAGTTCAGGAACCTGAGCCACAATGAGCCGCACATGCCCCAGAATGCCACGTTTCCT
GATTCCTTCCACCAGCCCAACAGCACTCCTTTCCCCTTATCTCCTAACAGCCCCTATCCTCCTT
CCCCTGCTAGCAGCACATATCCCAACTCCCCTGCAAGCTCCGGACCAGGAAGTCCATTTCAACT
CCCAGCTGATACCCCTCCCCCTGCCTATATGCCACCTGACGATCAGATGGGTCAGGATAACTCC
CAGCCTATGGACACAAGCAACAACATGATTCCTCAGATCATGCCCAGCATATCTAGCAGAGATG
TTCAGCCTGTTGCCTATGAAGAGCCCAAACACTGGTGTTCGATTGTGTACTATGAACTGAACAA
CCGTGTCGGGGAAGCTTTCCATGCGTCTTCCACCAGTGTGTTAGTAGACGGGTTTACAGACCCT
GCCAATAACAAGAGCCGCTTCTGCTTGGGGCTGCTGTCCAACGTTAATCGCAACTCAACCATCG
AGAACACCAGGCGGCACATCGGGAAAGGTGTCCATCTATACTACGTTGGTGGGGAGGTGTATGC
CGAGTGTCTTAGTGACAGCAGCATCTTTGTTCAGAGTAGGAACTGCAACTTTCACCATGGCTTC
CACCCCACCACCGTCTGTAAGATTCCCAGCAGCTGCAGCCTCAAAATTTTTAACAATCAGGAGT
TTGCTCAGCTTCTGGCTCAGTCAGTCAACCATGGGTTTGAGGCTGTGTATGAGCTCACCAAGAT
GTGTACCATTCGAATGAGTTTTGTCAAGGGCTGGGGAGCAGAGTACCACCGACAGGATGTAACC
AGTACTCCATGCTGGATTGAGATTCACCTCCATGGGCCTCTGCAGTGGCTGGATAAAGTCCTGA
CCCAGATGGGCTCTCCGCTGAACCCCATTTCTTCTGTTTCATAGTGCAGAAGTATTCTTTTCAA
TTATATTTTTAGTGGACTTGTTTTAATTTTAGAGGAATTTCCAGCACAGATACTGTGAGCTGAC
ATGGAAAAACAGATATTATGGCTTATTTTTTCTACGTAATTGTGACCAACACATTTGTATTTTA
TGATATTACATTTGTTTGTATTCGTGTTCATTGTGATTAACTTTCAAAAGTATTGTAAACGACA
TAGAGTGTTTTGCCCCTGTTGAAAAGTTCAGCAATGATCTTAAACTGGAGAGTGGTTCCTGTCC
CAACAGTGTGTAACTTGTTAACTTTTACACGGTAGTGCCTCACAGAATGGAGTCGTATCCTTTA
GAGAGCATGTATTGTGGGAAGGAGTAGACGACGTTGCTCTGGTAATCTCTTTACCCTACCACCT
TTGAAAAAGCATATGTTGTTTTACAAAAACTTAAAGTAGGGACTTACAGGAAACTATTGAATCT
TATTTGAAGGACACTGCAGTCCTAACATGGTGTTCAGTGAAAGCAAGGTGGTAGATTTCTGGAC
GTCATACATTTACATTTAATATTGCTAAGTGTTCGTCAGTGTAATGTGACTTCATGCTATATAT
CTTTTGTAAAACATTTCCTTTTAAAAAAATCTCCAGTATTTGTCTTTACTCAAATTTGTCATAA
GTTCCACGTAACATGAGTCACCGTGGCTCTGCGGCCTTGTTCAGCTTCGTCTGCTGCTTTGGGC
CGGTGTTTCAAGAGCTCCACTGTGCACCAGCCTTTTCACTTTGCACTTTTGTGGGTGACTGACT
GTCTTAGTGTAACCATGGGTGACTGACTGTCTTAATGTAAAAGACTGTCGGGTGGCCTGGTCTT
CCTTCCCCTTTGCTTCCTAGGCTCTCCTTTGTACCATACTACCATTCAGAGTTGGCAGCTGTAG
GTGGTGCTGCCTTCTCAAGCTGTAGTTATAATCTAGTTAGAATGCTGTCACTCTGTAGTTATAA
TCTAGTTAGAATGCTGTCACTCTGTAGTTATAATCTAGTTAGAATGCTGTCACTCTGTAGTTAC
AATCTAGTTAGAATGCTGTCACTCTGTAGTTACAATCTAGTTAGAATGCTGTCACTCTGTAGCT
CCAGCTGAGGTGCCTGTTAACTCCCTAGTGGTATGGGTGTTGTTGCTATTGAAAGATGGTGTGT
GGACACCTTTGCTCTCTACCAAGCTTGTCATACAAGGGCCGGCAACATAGCCATCAGAGCTCTT
CAGTGGGCCCAGGAGTCAGGCTGTTGGTGTAAATGAGTCACAGCAGGGCTGGGACGGTTTGTGT
CACATGTCAGAGAGCAGAGTGTCTCTGCGTCAGCGCTCTGCCTCTTTCTTTTATCCTTTTAGAA
CTACATGGGTGCTAATCTCCAGAACACTGTCAGGCGTGAACACTCTTAAGACACCCATTTAGTT
CACTGTGCCTTGGCCATAGGACTTGTAACCACTTTCTAGGGAGCGGTTGGATGAACAGTTATGG
CCTGAGAACGGAGACACTACTTTGACAAAGAAAAGGGCCTACCTTGCCCATCAGAGTGAGAGAA
TTTATTTCCTGGTGCCTTTTGAAGATATGCAGAAGATATTCTCACTCTGCTGAGAATGCTATCT
TGGCTTGACTTTCATAGTGCCCTTCCTGCCTCTGTGAGGAAAACAGCTTCTTTGGAGGGTGGGG
GTTCCTTTTGTTTTCTGTGTCATTATGTATTGACTTTCAGAGTGTAGCCGTGGGGCGGCTTTGC
TCCTTCCGAGGGGTGCCTTGCTGGCCTTCAGTAGCTTGGGCTGTAAGCATAACTCTTCCACAGT
GTGAGTGTGTCAGCCCCAGGAAAGAGATGGCCACTTCACACTGGAGCACAGAGGCTGTTCCTTG
TTCCTGTACTTTGCAGGCTCTTGGCAGCCTTTAAGAACAAGCTGGTAGGAATGTGTCTTGTTGA
ATGGCAGGGGATCCTTGTCTGTGATTTCTGCTGAGGTCTGGAAACAGGTGCCTTGCTTGTTCCT
TTGCCAACAGTGGGCTACATGTCGCTTCTGCACAGTCATCACATCACAGGCCTCAGGCTTGCAG
ATCCTGTGTGATTGGCCGTCTGTGCAAGTGGCAGGACTGAAGCTCTTAGCTGTTCTGAGTTTCA
TGGAGAAACCCCAGCCTGTTCTGCGGTCTGTAAATGGGAGACTGTAGTGCCTGCTCCTGTACTG
TCTAAGGATATACAGACGTCTGTGGGTAGGAGAGTGTTGGGGAGAGAAAGACAGCAAGTGCGGA
TTCTTCCGCAGAGCAGAGAACAGGGAGTAGGACCTCTGAAGAAGCTTCCCACCACACCAGACCC
AGTGCTGGTTCAGTCTCTGTCCTGAGATGGCTCTCGTGGAGCCCAGGCTGGCCCTGAGCATGCT
GAGTTGCAGATGGCGGCCATCAGTTCCCCACCTCTGAAGTGCTAGGGTGACGGCCATGCACCAT
CATAGCCAGCTCCTGTGGTGCTGAGACCCAGCCTCAGACTTCGTGTGTGCTGGGCAAGTACTCT
GCCAGCCCACCGACGTCCCTAGGTCAGCACTCACACTTTTAGCAGACAAAATAAATTAATACCT
GCCAGGGAAAAAGATAGGTTTGCAAATAATAATAAAGTTTGCCCTCAGTTGGATAAATGGAAGA
AACAAATCTCAGCCATGAATTACAGCAACAAGGTGCTGCCTAGAGAGAGCAGAACCAAGAGGTG
CGTTTGCTGATGTCACCAAACTGGATTTAAGGGCTGTAAGTAGGCATGCTGTGGGCCTCCCAGA
ATTAGAGAAAATTGGAGGAGGAAATCAGTTTTAAACAAGCAAAACCTGGGTAATGGTGGCGCCT
GCCTTCAGTTCAGCACTCTGGAGGCAGAGGCAGGCAGGTTTCTGAGGGCGACCTGGTCTGCAGA
GCGACTTCTACACAGAGGAACTCTGTCTTGGAGGAAAAAAAGAAAAGCAAAACAGTAAACAAAC
AGAACAGGATATGAATCGCACACACAATAACTTTCTATGTTCCATGGTTGCTGGTAAGAAGTAG
TCAGGCGTGGCTGAGTCGCTAAGGTGAGTCCAGGAGTAAGGTTGCTTAGGAGAACACTCGACAG
TCCACACCAATGGTGCAGGGAGGAAGTGTGCTGTTCTCGGGACGTTTGGCAGGTTAGACACCCT
TCGGGGACGAGAATGGCAGTAACATTGCAATGGGAAGTGAACTGTAAAAGTTGGGGGTTACCTC
AGTCTCCCTGTTGCCTGAGAGGACTGTGGGAAGCGTTTCCATCCCTGCCCATGGTGCCCATCGG
AAGAGAGAGTGGATGAAGAAGTGAAGTCTGGTTCAGGATACGCCTGTCAACGGTGTCATTTGTG
CTCCTGCTGCGGAGAGCACCGAGTGGCTCAGCTCTGTATCCTCCCATCTTGTTTGGTCACTTCC
CTGGCAGCACTTGAGTCCCTGTCACTGGTCTCTCTTAAAGTCCTGTCTCTTTGCTTCGAAGACT
CTTAAAAGTTACTATTCTTTATTTCTTTTTAAAAGTTGGTTGTTGTCTGGAGACACGGTCTCTC
TGTACAGTCCTGGCTGGCCTGGAAGTTACTGTGTAGGCTAGCCTTGAGCTTGAAGTGATTCTCT
TGCCGCTGCCTCTGGGTTCTGGGATCACAGGCGTACACCACCACGTACAGTGCCCTCTCATGAC
TTTTAGAATCCAGCCCCTGGTGACGGTTTGGTTTTAGATCTGTTAGCTTTGTCTGAATTCCTCT
TTGTCCTGCCGAGTAAATCCTCTGCTCTCCTCAGCAGAAATGCGTGTTCTCGATACACACACAG
CTAAATAGTGATGGTTTATAGGTGGCCTCTGCTATTATGTAGAGCATCTTTTTTGAAAGTAATC
TCCAGTTAGGTGGGCATTTCCCTCACAGCAGTAGGATTTTCCCCTTTGGGAGAAACCAGTTATT
AGAAGTTTTTCTTGTTAAAATAATGCTCTTATGAGAAGAAAAATTAAGGCATTTGTTCTGCACT
AACAGACTTCTATTTGATGGACACCTTGGACAGGTCTGTGGACTTGGGTGGGTTCCAGCGTGCT
GATAAGAAGGGTAACAGGATTTAATAGTGTCCTCAGGCCTTGCGTTCCTGGGGCACTCAAGAAA
GAGTTCATCACCCTGTCTAGGGCTGTAGGTCAGCGGTAGAGACTTAGCAGGCATGAAGTCCAGT
GTGCAGTGCCCAGCACTGTACAAAACTCGGGACACACCTACAACTGGATGGTATGCCAGACGCA
CAGAGGAAATGCACAGCGATGTGTTTAAAACGCAAGAATGAATACACGTTAGAACATTGAGCTG
GTGATGGTGGCTGTTTAGTAATGACCTCTTCCCCAGCAAAGAGCGTCCAAGAGCAGAGTGTCCC
CAGCAGAGAGAAGGCATTGGTGTACTTGTCCAGGTAACTTAGGTTTTAAATCAGCATAAGTAGT
TATTCTTTAAGGATTTGTTTGAAGTTGCTCTTTTTGAGAAGTTGAGAGTTTTGTGTGCAGCTGG
GCACATGCTTGCCCCGCCCTGCCTTAAACCATGACTTTCCTACTGTGAACCGGTGTCAGCCACA
CCAACACTCCAGGTAGGCCTGAGAGTCCCGAGCCCTTTCGAAGAAGGAAGGTCTTGAAGAGCGG
CTGTGCTCTTGCGCTACCGTTGGCTGAGCTGCTGCTTGGCCGAGTCGTAGGCATGGCGGTTGGG
CACTGTGCTCTCTACGCGGCCAGCTGCAGTGTGCCCTCCCCGAGGACGATACTTCACATGAGGA
TGTGGAGCCGAGGGATGGCCGCACCGCAAGTCTGCTCACAAGTACTGGTTCTGCTTTCTTCACG
TCCTAGAAGACTAAACTAGCAGTGTGCTTCAGCCCTGCTACCTTTTGATACATATAAAAATGTA
CTAGGTTTTACTATATACTGTGCTTCTCAAAGCCATAACTCTTAAGAAACTTGTTTTTGCATAT
TGTTTGCTAATACTTTGTTTTAATAAACTTCAAAGGCTGCTCA

hide sequence

RefSeq Acc Id:

XM_039096035 ⟹ XP_038951963

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	7,867,640 - 7,896,811 (-)	NCBI
mRatBN7.2	17	7,862,333 - 7,891,284 (-)	NCBI

RefSeq Acc Id:

XM_039096036 ⟹ XP_038951964

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	7,867,640 - 7,896,950 (-)	NCBI
mRatBN7.2	17	7,862,332 - 7,891,658 (-)	NCBI

RefSeq Acc Id:

XM_063276717 ⟹ XP_063132787

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	7,867,640 - 7,896,947 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_067724	(Get FASTA)	NCBI Sequence Viewer
	XP_006253648	(Get FASTA)	NCBI Sequence Viewer
	XP_006253649	(Get FASTA)	NCBI Sequence Viewer
	XP_006253650	(Get FASTA)	NCBI Sequence Viewer
	XP_017456147	(Get FASTA)	NCBI Sequence Viewer
	XP_038951963	(Get FASTA)	NCBI Sequence Viewer
	XP_038951964	(Get FASTA)	NCBI Sequence Viewer
	XP_063132787	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH70905	(Get FASTA)	NCBI Sequence Viewer
	AAI61849	(Get FASTA)	NCBI Sequence Viewer
	BAA83093	(Get FASTA)	NCBI Sequence Viewer
	EDL93930	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000016704
	ENSRNOP00000016704.3
	ENSRNOP00000077054
	ENSRNOP00000077054.1
	ENSRNOP00000091448.1
	ENSRNOP00000093149
	ENSRNOP00000093149.1
	ENSRNOP00055034721
	ENSRNOP00060028141
	ENSRNOP00065034538
GenBank Protein	Q9R1V3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_067724 ⟸ NM_021692

- UniProtKB:

Q9R1V3 (UniProtKB/Swiss-Prot), B1WBR0 (UniProtKB/TrEMBL), A0A8I5Y0N4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTSMASLFSFTSPAVKRLLGWKQGDEEEKWAEKAVDALVKKLKKKKGAMEELEKALSSPGQPSK
CVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLDICEFPFGSKQKEVCINPYHY
KRVESPVLPPVLVPRHNEFNPQHSLLVQFRNLSHNEPHMPQNATFPDSFHQPNSTPFPLSPNSP
YPPSPASSTYPNSPASSGPGSPFQLPADTPPPAYMPPDDQMGQDNSQPMDTSNNMIPQIMPSIS
SRDVQPVAYEEPKHWCSIVYYELNNRVGEAFHASSTSVLVDGFTDPANNKSRFCLGLLSNVNRN
STIENTRRHIGKGVHLYYVGGEVYAECLSDSSIFVQSRNCNFHHGFHPTTVCKIPSSCSLKIFN
NQEFAQLLAQSVNHGFEAVYELTKMCTIRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLD
KVLTQMGSPLNPISSVS

hide sequence

RefSeq Acc Id:	XP_006253649 ⟸ XM_006253587
- Peptide Label:	isoform X1
- UniProtKB:	Q9R1V3 (UniProtKB/Swiss-Prot), B1WBR0 (UniProtKB/TrEMBL), A0A8I5Y0N4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSMASLFSFTSPAVKRLLGWKQGDEEEKWAEKAVDALVKKLKKKKGAMEELEKALSSPGQPSK CVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLDICEFPFGSKQKEVCINPYHY KRVESPVLPPVLVPRHNEFNPQHSLLVQFRNLSHNEPHMPQNATFPDSFHQPNSTPFPLSPNSP YPPSPASSTYPNSPASSGPGSPFQLPADTPPPAYMPPDDQMGQDNSQPMDTSNNMIPQIMPSIS SRDVQPVAYEEPKHWCSIVYYELNNRVGEAFHASSTSVLVDGFTDPANNKSRFCLGLLSNVNRN STIENTRRHIGKGVHLYYVGGEVYAECLSDSSIFVQSRNCNFHHGFHPTTVCKIPSSCSLKIFN NQEFAQLLAQSVNHGFEAVYELTKMCTIRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLD KVLTQMGSPLNPISSVS hide sequence

RefSeq Acc Id:	XP_006253648 ⟸ XM_006253586
- Peptide Label:	isoform X1
- UniProtKB:	Q9R1V3 (UniProtKB/Swiss-Prot), B1WBR0 (UniProtKB/TrEMBL), A0A8I5Y0N4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSMASLFSFTSPAVKRLLGWKQGDEEEKWAEKAVDALVKKLKKKKGAMEELEKALSSPGQPSK CVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLDICEFPFGSKQKEVCINPYHY KRVESPVLPPVLVPRHNEFNPQHSLLVQFRNLSHNEPHMPQNATFPDSFHQPNSTPFPLSPNSP YPPSPASSTYPNSPASSGPGSPFQLPADTPPPAYMPPDDQMGQDNSQPMDTSNNMIPQIMPSIS SRDVQPVAYEEPKHWCSIVYYELNNRVGEAFHASSTSVLVDGFTDPANNKSRFCLGLLSNVNRN STIENTRRHIGKGVHLYYVGGEVYAECLSDSSIFVQSRNCNFHHGFHPTTVCKIPSSCSLKIFN NQEFAQLLAQSVNHGFEAVYELTKMCTIRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLD KVLTQMGSPLNPISSVS hide sequence

RefSeq Acc Id:	XP_006253650 ⟸ XM_006253588
- Peptide Label:	isoform X1
- UniProtKB:	Q9R1V3 (UniProtKB/Swiss-Prot), B1WBR0 (UniProtKB/TrEMBL), A0A8I5Y0N4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSMASLFSFTSPAVKRLLGWKQGDEEEKWAEKAVDALVKKLKKKKGAMEELEKALSSPGQPSK CVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLDICEFPFGSKQKEVCINPYHY KRVESPVLPPVLVPRHNEFNPQHSLLVQFRNLSHNEPHMPQNATFPDSFHQPNSTPFPLSPNSP YPPSPASSTYPNSPASSGPGSPFQLPADTPPPAYMPPDDQMGQDNSQPMDTSNNMIPQIMPSIS SRDVQPVAYEEPKHWCSIVYYELNNRVGEAFHASSTSVLVDGFTDPANNKSRFCLGLLSNVNRN STIENTRRHIGKGVHLYYVGGEVYAECLSDSSIFVQSRNCNFHHGFHPTTVCKIPSSCSLKIFN NQEFAQLLAQSVNHGFEAVYELTKMCTIRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLD KVLTQMGSPLNPISSVS hide sequence

RefSeq Acc Id:	XP_017456147 ⟸ XM_017600658
- Peptide Label:	isoform X1
- UniProtKB:	Q9R1V3 (UniProtKB/Swiss-Prot), B1WBR0 (UniProtKB/TrEMBL), A0A8I5Y0N4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSMASLFSFTSPAVKRLLGWKQGDEEEKWAEKAVDALVKKLKKKKGAMEELEKALSSPGQPSK CVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLDICEFPFGSKQKEVCINPYHY KRVESPVLPPVLVPRHNEFNPQHSLLVQFRNLSHNEPHMPQNATFPDSFHQPNSTPFPLSPNSP YPPSPASSTYPNSPASSGPGSPFQLPADTPPPAYMPPDDQMGQDNSQPMDTSNNMIPQIMPSIS SRDVQPVAYEEPKHWCSIVYYELNNRVGEAFHASSTSVLVDGFTDPANNKSRFCLGLLSNVNRN STIENTRRHIGKGVHLYYVGGEVYAECLSDSSIFVQSRNCNFHHGFHPTTVCKIPSSCSLKIFN NQEFAQLLAQSVNHGFEAVYELTKMCTIRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLD KVLTQMGSPLNPISSVS hide sequence

RefSeq Acc Id:

ENSRNOP00000016704 ⟸ ENSRNOT00000016704

RefSeq Acc Id:	XP_038951964 ⟸ XM_039096036
- Peptide Label:	isoform X1
- UniProtKB:	Q9R1V3 (UniProtKB/Swiss-Prot), B1WBR0 (UniProtKB/TrEMBL), A0A8I5Y0N4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951963 ⟸ XM_039096035
- Peptide Label:	isoform X1
- UniProtKB:	Q9R1V3 (UniProtKB/Swiss-Prot), B1WBR0 (UniProtKB/TrEMBL), A0A8I5Y0N4 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000077054 ⟸ ENSRNOT00000102907

RefSeq Acc Id:

ENSRNOP00000091448 ⟸ ENSRNOT00000099544

RefSeq Acc Id:

ENSRNOP00000093149 ⟸ ENSRNOT00000105138

RefSeq Acc Id:	XP_063132787 ⟸ XM_063276717
- Peptide Label:	isoform X1
- UniProtKB:	Q9R1V3 (UniProtKB/Swiss-Prot), B1WBR0 (UniProtKB/TrEMBL)

Protein Domains

MH1 MH2

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9R1V3-F1-model_v2	AlphaFold	Q9R1V3	1-465	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620158	AgrOrtholog
BioCyc Gene	G2FUF-10278	BioCyc
Ensembl Genes	ENSRNOG00000022870	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055024650	UniProtKB/Swiss-Prot
	ENSRNOG00060019755	UniProtKB/Swiss-Prot
	ENSRNOG00065024555	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000016704.5	UniProtKB/Swiss-Prot
	ENSRNOT00000099544.1	UniProtKB/TrEMBL
	ENSRNOT00000102907.1	UniProtKB/TrEMBL
	ENSRNOT00000105138	ENTREZGENE
	ENSRNOT00000105138.1	UniProtKB/TrEMBL
	ENSRNOT00055042516	UniProtKB/Swiss-Prot
	ENSRNOT00060034308	UniProtKB/Swiss-Prot
	ENSRNOT00065042234	UniProtKB/Swiss-Prot
Gene3D-CATH	2.60.200.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	3.90.520.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7103141	IMAGE-MGC_LOAD
	IMAGE:9099068	IMAGE-MGC_LOAD
InterPro	Dwarfin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MAD_homology1_Dwarfin-type	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MAD_homology_MH1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SMAD-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SMAD_dom_Dwarfin-type	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SMAD_FHA_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SMAD_MH1_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:59328	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:187371	IMAGE-MGC_LOAD
	MGC:91705	IMAGE-MGC_LOAD
NCBI Gene	59328	ENTREZGENE
PANTHER	MOTHERS AGAINST DECAPENTAPLEGIC HOMOLOG 5	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PROTEIN MOTHERS AGAINST DPP	UniProtKB/TrEMBL
	PTHR13703	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	MH1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MH2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Smad5	PhenoGen
PROSITE	MH1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MH2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000022870	RatGTEx
	ENSRNOG00055024650	RatGTEx
	ENSRNOG00060019755	RatGTEx
	ENSRNOG00065024555	RatGTEx
SMART	DWA	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	DWB	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF49879	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF56366	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I5Y0N4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AEH5_RAT	UniProtKB/TrEMBL
	A0A8I6AJ12_RAT	UniProtKB/TrEMBL
	A6KAM2_RAT	UniProtKB/TrEMBL
	B1WBR0	ENTREZGENE, UniProtKB/TrEMBL
	Q6IRI8_RAT	UniProtKB/TrEMBL
	Q9R1V3	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-10-23	Smad5	SMAD family member 5	Smad5	MAD homolog 5 (Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-11-17	Smad5	MAD homolog 5 (Drosophila)		SMAD, mothers against DPP homolog 5 (Drosophila)	Name updated	1299863	APPROVED
2005-01-20	Smad5	SMAD, mothers against DPP homolog 5 (Drosophila)	Madh5	Smad5	Symbol and Name updated	1299863	APPROVED
2002-08-07	Madh5	Smad5			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)