Rps9 (ribosomal protein S9) - Rat Genome Database

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Gene: Rps9 (ribosomal protein S9) Rattus norvegicus
Analyze
Symbol: Rps9
Name: ribosomal protein S9
RGD ID: 619889
Description: Enables 5.8S rRNA binding activity. Predicted to be involved in positive regulation of cell population proliferation; ribosomal small subunit biogenesis; and translation. Part of cytosolic small ribosomal subunit. Orthologous to human RPS9 (ribosomal protein S9); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 40S ribosomal protein S9; 40S ribosomal protein S9-like; LOC100909466; ribosomal protein S9-like 1; Rps9l1; small ribosomal subunit protein uS4
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8174,427,084 - 74,430,513 (-)NCBIGRCr8
mRatBN7.2165,511,723 - 65,515,076 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl165,511,723 - 65,515,123 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0164,018,325 - 64,021,723 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl164,018,125 - 64,090,021 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0163,010,583 - 63,013,972 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4163,824,657 - 63,828,046 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1163,901,399 - 63,904,417 (-)NCBI
Celera163,236,829 - 63,240,227 (-)NCBICelera
Cytogenetic Map1q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
ammonium chloride  (EXP)
amphetamine  (EXP)
aristolochic acid A  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenic trichloride  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Brodifacoum  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
CGP 52608  (ISO)
chloropicrin  (ISO)
chromium(6+)  (ISO)
clofibric acid  (EXP)
cocaine  (ISO)
coumarin  (ISO)
Cuprizon  (ISO)
diarsenic trioxide  (ISO)
dihydroartemisinin  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
ethanol  (EXP)
flavonoids  (EXP)
flutamide  (EXP)
genistein  (EXP)
glafenine  (EXP)
haloperidol  (ISO)
hydralazine  (ISO)
hydrogen peroxide  (ISO)
indometacin  (EXP)
ivermectin  (ISO)
lead(0)  (ISO)
leflunomide  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP)
nefazodone  (EXP)
nimesulide  (EXP)
p-menthan-3-ol  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenethyl caffeate  (EXP)
pregnenolone 16alpha-carbonitrile  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
tetrachloromethane  (ISO)
tungsten  (ISO)
valproic acid  (EXP,ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. The primary structure of rat ribosomal protein S9. Chan YL, etal., Biochem Biophys Res Commun 1993 May 28;193(1):106-12.
2. The isolation of eukaryotic ribosomal proteins. The purification and characterization of the 40 S ribosomal subunit proteins S2, S3, S4, S5, S6, S7, S8, S9, S13, S23/S24, S27, and S28. Collatz E, etal., J Biol Chem. 1976 Aug 10;251(15):4666-72.
3. Isolation of eukaryotic ribosomal proteins. Purification and characterization of the 40 S ribosomal subunit proteins Sa, Sc, S3a, S3b, S5', S9, S10, S11, S12, S14, S15, S15', S16, S17, S18, S19, S20, S21, S26, S27', and S29. Collatz E, etal., J Biol Chem. 1977 Dec 25;252(24):9071-80.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
6. Two-dimensional electrophoretic analysis of ribosomal proteins from chronically injured liver. Gressner AM J Clin Chem Clin Biochem. 1979 Aug;17(8):541-5.
7. Electron microscopic investigations on the location of rat liver ribosomal proteins S3a, S5, S6, S7 and S9 by means of antibody labeling. Lutsch G, etal., Biomed Biochim Acta. 1983;42(6):705-23.
8. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
9. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
10. GOA pipeline RGD automated data pipeline
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Comprehensive gene review and curation RGD comprehensive gene curation
13. Characterization of the binding of rat liver ribosomal proteins L6, L8, L19, S9, and S13 to 5.8 S ribosomal ribonucleic acid. Todokoro K, etal., J Biol Chem. 1981 Jul 25;256(14):7207-12.
Additional References at PubMed
PMID:8706699   PMID:8889548   PMID:12477932   PMID:12718447   PMID:15277470   PMID:15489334   PMID:15632090   PMID:15883184   PMID:16452087   PMID:17289661   PMID:18420587   PMID:19946888  
PMID:20458337   PMID:21423176   PMID:21630459   PMID:21700703   PMID:22658674   PMID:23376485   PMID:24625528   PMID:26316108   PMID:30053369  


Genomics

Comparative Map Data
Rps9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8174,427,084 - 74,430,513 (-)NCBIGRCr8
mRatBN7.2165,511,723 - 65,515,076 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl165,511,723 - 65,515,123 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0164,018,325 - 64,021,723 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl164,018,125 - 64,090,021 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0163,010,583 - 63,013,972 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4163,824,657 - 63,828,046 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1163,901,399 - 63,904,417 (-)NCBI
Celera163,236,829 - 63,240,227 (-)NCBICelera
Cytogenetic Map1q12NCBI
RPS9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381954,200,858 - 54,207,647 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1954,200,809 - 54,249,003 (+)EnsemblGRCh38hg38GRCh38
GRCh371954,704,726 - 54,711,515 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361959,396,538 - 59,403,327 (+)NCBINCBI36Build 36hg18NCBI36
Build 341959,396,830 - 59,403,323NCBI
Celera1951,746,402 - 51,753,191 (+)NCBICelera
Cytogenetic Map19q13.42NCBI
HuRef1951,020,531 - 51,027,322 (+)NCBIHuRef
CHM1_11954,705,877 - 54,712,666 (+)NCBICHM1_1
T2T-CHM13v2.01957,281,246 - 57,288,035 (+)NCBIT2T-CHM13v2.0
Rps9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3973,707,035 - 3,709,896 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl73,706,992 - 3,709,896 (+)EnsemblGRCm39 Ensembl
GRCm3873,703,954 - 3,706,897 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl73,703,993 - 3,706,897 (+)EnsemblGRCm38mm10GRCm38
MGSCv3773,655,643 - 3,658,499 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3673,307,128 - 3,309,984 (+)NCBIMGSCv36mm8
Celera73,617,631 - 3,620,489 (+)NCBICelera
Cytogenetic Map7A1NCBI
cM Map72.13NCBI
Rps9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495560473,593 - 76,414 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495560473,593 - 76,414 (-)NCBIChiLan1.0ChiLan1.0
RPS9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22060,204,984 - 60,212,219 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11962,126,323 - 62,133,553 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01951,132,900 - 51,139,713 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11959,974,377 - 59,981,236 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1959,974,377 - 59,981,236 (+)Ensemblpanpan1.1panPan2
RPS9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11102,989,338 - 102,995,755 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1102,989,360 - 103,098,573 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1103,051,249 - 103,057,599 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01103,634,684 - 103,640,864 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1103,634,715 - 103,640,864 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11103,277,288 - 103,283,423 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01103,033,101 - 103,039,442 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01103,747,981 - 103,754,162 (+)NCBIUU_Cfam_GSD_1.0
Rps9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093492,628,946 - 2,633,256 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936994304,094 - 308,893 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936994304,617 - 308,855 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl655,920,934 - 55,927,280 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1655,920,930 - 55,927,280 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2653,292,175 - 53,298,312 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPS9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1646,865,339 - 46,882,947 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607326,965,181 - 26,972,287 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248322,389,974 - 2,394,196 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248322,391,268 - 2,394,317 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rps9
35 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:138
Count of miRNA genes:122
Interacting mature miRNAs:131
Transcripts:ENSRNOT00000015234
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11148131275088344Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
724520Bp145Blood pressure QTL 1452.10.0024arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12078482865784828Rat
1357400Bw62Body weight QTL624.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)12234064767340647Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)12887978078430678Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)13344984878449848Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)13344984878449848Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)13483685879836858Rat
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)13523959878430678Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)13523959878430678Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14580314078430678Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14936146582174945Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)15386304190532583Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)15389511782174945Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15389511782174945Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)15673266898773277Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)156949932101949932Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat

Markers in Region
RH143335  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 11 32 19 19 19 1 4 41 24 37 11 1
Low 32 25 22 22 7 7 33 11 4 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000086622   ⟹   ENSRNOP00000074779
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl165,511,723 - 65,515,121 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000090819   ⟹   ENSRNOP00000075462
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl165,511,727 - 65,515,074 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000091654   ⟹   ENSRNOP00000072986
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl165,511,954 - 65,515,123 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000115378   ⟹   ENSRNOP00000079205
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl165,511,723 - 65,514,609 (-)Ensembl
RefSeq Acc Id: NM_001313935   ⟹   NP_001300864
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8174,427,084 - 74,430,437 (-)NCBI
mRatBN7.2165,511,723 - 65,515,076 (-)NCBI
RefSeq Acc Id: NR_132729
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8174,427,084 - 74,430,437 (-)NCBI
mRatBN7.2165,511,723 - 65,515,076 (-)NCBI
RefSeq Acc Id: XM_063286977   ⟹   XP_063143047
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8174,427,088 - 74,430,513 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000072986   ⟸   ENSRNOT00000091654
RefSeq Acc Id: ENSRNOP00000079205   ⟸   ENSRNOT00000115378
RefSeq Acc Id: ENSRNOP00000074779   ⟸   ENSRNOT00000086622
RefSeq Acc Id: ENSRNOP00000075462   ⟸   ENSRNOT00000090819
RefSeq Acc Id: NP_001300864   ⟸   NM_001313935
- UniProtKB: Q6P9W7 (UniProtKB/Swiss-Prot),   P29314 (UniProtKB/Swiss-Prot),   A0A8I5ZM91 (UniProtKB/TrEMBL),   A6KS18 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_063143047   ⟸   XM_063286977
- Peptide Label: isoform X1
Protein Domains
RNA-binding S4   S4 RNA-binding   Small ribosomal subunit protein uS4 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P29314-F1-model_v2 AlphaFold P29314 1-194 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:619889 AgrOrtholog
Ensembl Genes ENSRNOG00000058909 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055030817 UniProtKB/Swiss-Prot
  ENSRNOG00060029140 UniProtKB/Swiss-Prot
  ENSRNOG00065031035 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000086622 ENTREZGENE
  ENSRNOT00000086622.2 UniProtKB/Swiss-Prot
  ENSRNOT00000090819 ENTREZGENE
  ENSRNOT00000090819.2 UniProtKB/TrEMBL
  ENSRNOT00000091654.2 UniProtKB/TrEMBL
  ENSRNOT00000115378.1 UniProtKB/TrEMBL
  ENSRNOT00055053497 UniProtKB/Swiss-Prot
  ENSRNOT00060050638 UniProtKB/Swiss-Prot
  ENSRNOT00065053530 UniProtKB/Swiss-Prot
Gene3D-CATH 3.10.290.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6922405 IMAGE-MGC_LOAD
InterPro Ribosomal_S4/S9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S4/S9_euk/arc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S4/S9_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S4_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S4_RNA-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S4_RNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:103689992 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:72792 IMAGE-MGC_LOAD
NCBI Gene Rps9 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  40S RIBOSOMAL PROTEIN S9 UniProtKB/TrEMBL
  PTHR11831 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF01479 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rps9 PhenoGen
PROSITE PS50889 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RIBOSOMAL_S4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000058909 RatGTEx
  ENSRNOG00055030817 RatGTEx
  ENSRNOG00060029140 RatGTEx
  ENSRNOG00065031035 RatGTEx
SMART Ribosomal_S4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00363 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Alpha-L RNA-binding motif UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K4C4_RAT UniProtKB/TrEMBL
  A0A8I5ZM91 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2RAR7_RAT UniProtKB/TrEMBL
  A6KS18 ENTREZGENE, UniProtKB/TrEMBL
  P29314 ENTREZGENE
  Q6P9W7 ENTREZGENE
  RS9_RAT UniProtKB/Swiss-Prot
UniProt Secondary Q6P9W7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-03-01 Rps9  ribosomal protein S9  Rps9l1  ribosomal protein S9-like 1  Data merged from RGD:9089855 737654 PROVISIONAL
2016-01-26 Rps9l1  ribosomal protein S9-like 1  LOC103689992  40S ribosomal protein S9  Name and Symbol changed 629549 APPROVED
2015-07-29 Rps9  ribosomal protein S9  LOC100909466  40S ribosomal protein S9-like  Data merged from RGD:6503712 737654 PROVISIONAL
2014-08-25 LOC103689992  40S ribosomal protein S9      Symbol and Name status set to provisional 70820 PROVISIONAL
2012-07-05 LOC100909466  40S ribosomal protein S9-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-20 Rps9  ribosomal protein S9      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Rps9  ribosomal protein S9      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_protein 193 amino acids and a molecular weight of 22,360 634030