Pkib (cAMP-dependent protein kinase inhibitor beta) - Rat Genome Database

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Gene: Pkib (cAMP-dependent protein kinase inhibitor beta) Rattus norvegicus
Analyze
Symbol: Pkib
Name: cAMP-dependent protein kinase inhibitor beta
RGD ID: 3335
Description: Predicted to enable cAMP-dependent protein kinase inhibitor activity. Predicted to be involved in positive regulation of telomere capping and positive regulation of telomere maintenance via telomerase. Predicted to be active in cytoplasm and nucleus. Orthologous to human PKIB (cAMP-dependent protein kinase inhibitor beta); INTERACTS WITH 1,3-dinitrobenzene; 17alpha-ethynylestradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cAMP-dependent protein kinase (catalytic subunit binding) inhibtor 2; cAMP-dependent protein kinase inhibitor, testis isoform; hypothetical protein LOC100362071; LOC100362071; PKI-beta; PKINH; Prkacn2; protein kinase (cAMP dependent, catalytic) inhibitor beta; protein kinase (cAMP-dependent, catalytic) inhibitor beta; protein kinase inhibitor beta; protein kinase inhibitor beta cAMP dependent testis specific; protein kinase inhibitor beta, (cAMP-dependent, catalytic) inhibitor beta; protein kinase inhibitor beta, cAMP dependent, catalytic; protein kinase inhibitor beta, cAMP dependent, testis specific; protein kinase inhibitor, beta; RATPKINH
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82037,511,564 - 37,608,607 (+)NCBIGRCr8
mRatBN7.22036,965,172 - 37,062,190 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2036,905,340 - 37,062,187 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2037,986,335 - 38,081,670 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02037,377,047 - 37,472,376 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02038,104,092 - 38,199,428 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02040,616,868 - 40,712,598 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2040,618,128 - 40,712,592 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02042,345,684 - 42,440,594 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42036,655,506 - 36,750,474 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12036,669,342 - 36,764,483 (+)NCBI
Celera2038,280,714 - 38,375,485 (+)NCBICelera
Cytogenetic Map20q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,3-dinitrobenzene  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (EXP)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
ammonium chloride  (EXP)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bexarotene  (EXP)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
buta-1,3-diene  (ISO)
calcitriol  (ISO)
CGP 52608  (ISO)
chloroprene  (ISO)
chlorpyrifos  (EXP)
choline  (ISO)
clozapine  (EXP)
coumestrol  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
diazinon  (EXP)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
fenofibrate  (ISO)
folic acid  (ISO)
genistein  (ISO)
haloperidol  (EXP)
Indeno[1,2,3-cd]pyrene  (ISO)
indole-3-methanol  (EXP)
L-methionine  (ISO)
maneb  (ISO)
methylmercury chloride  (ISO)
N-methyl-N-nitrosourea  (EXP)
N-nitrosodiethylamine  (EXP)
ochratoxin A  (ISO)
oxaliplatin  (EXP)
ozone  (EXP)
paracetamol  (ISO)
paraquat  (EXP,ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
phenobarbital  (ISO)
picene  (ISO)
pirinixic acid  (EXP,ISO)
poly(I:C)  (EXP)
potassium dichromate  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
T-2 toxin  (EXP)
tamoxifen  (EXP,ISO)
temozolomide  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
topotecan  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
troglitazone  (ISO)
urethane  (ISO)
valproic acid  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IEA)
nucleus  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Correlation between genetic and cytogenetic maps of the rat. Andoh Y, etal., Mamm Genome 1998 Apr;9(4):287-93.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. A dual-specificity isoform of the protein kinase inhibitor PKI produced by alternate gene splicing. Kumar P and Walsh DA, Biochem J 2002 Mar 15;362(Pt 3):533-7.
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
8. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
9. Molecular cloning of a rat testis form of the inhibitor protein of cAMP-dependent protein kinase. Van Patten SM, etal., Proc Natl Acad Sci U S A 1991 Jun 15;88(12):5383-7.
Additional References at PubMed
PMID:7905001   PMID:12060780   PMID:16406266   PMID:21531765  


Genomics

Comparative Map Data
Pkib
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82037,511,564 - 37,608,607 (+)NCBIGRCr8
mRatBN7.22036,965,172 - 37,062,190 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2036,905,340 - 37,062,187 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2037,986,335 - 38,081,670 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02037,377,047 - 37,472,376 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02038,104,092 - 38,199,428 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02040,616,868 - 40,712,598 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2040,618,128 - 40,712,592 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02042,345,684 - 42,440,594 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42036,655,506 - 36,750,474 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12036,669,342 - 36,764,483 (+)NCBI
Celera2038,280,714 - 38,375,485 (+)NCBICelera
Cytogenetic Map20q12NCBI
PKIB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386122,471,921 - 122,726,373 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6122,471,917 - 122,726,373 (+)EnsemblGRCh38hg38GRCh38
GRCh376122,793,066 - 123,047,518 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366122,834,761 - 123,089,217 (+)NCBINCBI36Build 36hg18NCBI36
Build 346122,973,075 - 123,089,216NCBI
Celera6123,537,370 - 123,791,807 (+)NCBICelera
Cytogenetic Map6q22.31NCBI
HuRef6120,370,063 - 120,624,394 (+)NCBIHuRef
CHM1_16123,056,898 - 123,311,328 (+)NCBICHM1_1
T2T-CHM13v2.06123,660,238 - 123,914,654 (+)NCBIT2T-CHM13v2.0
Pkib
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391057,508,077 - 57,617,208 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1057,508,077 - 57,617,208 (+)EnsemblGRCm39 Ensembl
GRCm381057,631,981 - 57,741,112 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1057,631,981 - 57,741,112 (+)EnsemblGRCm38mm10GRCm38
MGSCv371057,351,787 - 57,460,918 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361057,320,496 - 57,429,527 (+)NCBIMGSCv36mm8
Celera1058,450,664 - 58,558,969 (+)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1029.22NCBI
Pkib
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554364,568,118 - 4,600,311 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554364,433,065 - 4,600,967 (+)NCBIChiLan1.0ChiLan1.0
PKIB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25142,466,019 - 142,722,252 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16140,375,363 - 140,621,377 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06120,373,497 - 120,517,119 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16124,496,954 - 124,640,260 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6124,612,910 - 124,640,260 (+)Ensemblpanpan1.1panPan2
PKIB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1161,960,466 - 62,049,553 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl161,967,129 - 62,088,547 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha162,770,335 - 62,859,412 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0162,164,880 - 62,254,010 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl162,171,111 - 62,314,381 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1162,099,443 - 62,188,400 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0161,887,392 - 61,976,219 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0162,535,714 - 62,624,781 (+)NCBIUU_Cfam_GSD_1.0
Pkib
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946112,839,078 - 112,945,229 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049368021,130,218 - 1,236,822 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049368021,130,341 - 1,236,715 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PKIB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl139,913,760 - 40,022,713 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1139,913,753 - 40,022,971 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PKIB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11351,080,860 - 51,198,353 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1351,078,369 - 51,198,438 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604023,381,455 - 23,496,516 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pkib
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247988,459,621 - 8,549,786 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pkib
1351 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:431
Count of miRNA genes:216
Interacting mature miRNAs:251
Transcripts:ENSRNOT00000001075, ENSRNOT00000057364
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202520973454435887Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202924438854435887Rat
70158Bp60Blood pressure QTL 603arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)203161428444396023Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202510672254435887Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)201919072154435887Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
2317880Alcrsp25Alcohol response QTL 252.3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)201769755054435887Rat
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)201761783247606836Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202510672254435887Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202510672254435887Rat

Markers in Region
D20Arb6  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22037,061,253 - 37,061,562 (+)MAPPERmRatBN7.2
Rnor_6.02040,711,662 - 40,711,970NCBIRnor6.0
Rnor_5.02042,439,658 - 42,439,966UniSTSRnor5.0
RGSC_v3.42036,749,742 - 36,750,050UniSTSRGSC3.4
RGSC_v3.42036,749,741 - 36,750,050RGDRGSC3.4
RGSC_v3.12036,763,541 - 36,763,850RGD
Celera2038,374,549 - 38,374,857UniSTS
SHRSP x BN Map2026.3899UniSTS
SHRSP x BN Map2026.3899RGD
FHH x ACI Map2024.7799RGD
Cytogenetic Map20q12-q13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 11 11 8 2
Low 2 40 27 8 27 3 3 59 28 31 9 3
Below cutoff 31 17 14 14 5 7 4 7 2 5

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001076553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_012627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF413572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC078880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG666532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG668634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M64092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000001075   ⟹   ENSRNOP00000001075
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2036,966,410 - 37,062,187 (+)Ensembl
Rnor_6.0 Ensembl2040,618,128 - 40,712,592 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000057364   ⟹   ENSRNOP00000054176
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2040,618,128 - 40,712,592 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000082043   ⟹   ENSRNOP00000072523
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2036,905,340 - 37,061,982 (+)Ensembl
Rnor_6.0 Ensembl2040,618,623 - 40,712,592 (+)Ensembl
RefSeq Acc Id: NM_001076553   ⟹   NP_001070021
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82037,512,837 - 37,608,607 (+)NCBI
mRatBN7.22036,966,410 - 37,062,190 (+)NCBI
Rnor_6.02040,618,128 - 40,712,598 (+)NCBI
Rnor_5.02042,345,684 - 42,440,594 (+)NCBI
RGSC_v3.42036,655,506 - 36,750,474 (+)RGD
Celera2038,280,714 - 38,375,485 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001271158   ⟹   NP_001258087
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82037,513,332 - 37,608,607 (+)NCBI
mRatBN7.22036,966,905 - 37,062,190 (+)NCBI
Rnor_6.02040,618,623 - 40,712,598 (+)NCBI
Rnor_5.02042,345,684 - 42,440,594 (+)NCBI
Celera2038,281,209 - 38,375,485 (+)NCBI
Sequence:
RefSeq Acc Id: NM_012627   ⟹   NP_036759
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82037,512,837 - 37,608,607 (+)NCBI
mRatBN7.22036,966,410 - 37,062,190 (+)NCBI
Rnor_6.02040,618,128 - 40,712,598 (+)NCBI
Rnor_5.02042,345,684 - 42,440,594 (+)NCBI
RGSC_v3.42036,655,506 - 36,750,474 (+)RGD
Celera2038,280,714 - 38,375,485 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006256511   ⟹   XP_006256573
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82037,527,834 - 37,608,403 (+)NCBI
mRatBN7.22036,981,423 - 37,061,986 (+)NCBI
Rnor_6.02040,632,184 - 40,712,394 (+)NCBI
Rnor_5.02042,345,684 - 42,440,594 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006256512   ⟹   XP_006256574
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82037,511,586 - 37,608,403 (+)NCBI
mRatBN7.22036,965,172 - 37,061,986 (+)NCBI
Rnor_6.02040,616,868 - 40,712,394 (+)NCBI
Rnor_5.02042,345,684 - 42,440,594 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006256513   ⟹   XP_006256575
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82037,511,564 - 37,608,403 (+)NCBI
mRatBN7.22036,965,178 - 37,061,986 (+)NCBI
Rnor_6.02040,616,868 - 40,712,394 (+)NCBI
Rnor_5.02042,345,684 - 42,440,594 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039098416   ⟹   XP_038954344
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82037,513,275 - 37,608,403 (+)NCBI
mRatBN7.22036,966,679 - 37,061,986 (+)NCBI
RefSeq Acc Id: XM_063278957   ⟹   XP_063135027
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82037,511,577 - 37,608,403 (+)NCBI
RefSeq Acc Id: XM_063278958   ⟹   XP_063135028
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82037,512,924 - 37,608,403 (+)NCBI
RefSeq Acc Id: NP_036759   ⟸   NM_012627
- Peptide Label: isoform 2
- UniProtKB: P27775 (UniProtKB/Swiss-Prot),   Q6AYW3 (UniProtKB/TrEMBL),   A6K4C9 (UniProtKB/TrEMBL),   A0A0G2K371 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001070021   ⟸   NM_001076553
- Peptide Label: isoform 1
- UniProtKB: Q8R4R3 (UniProtKB/TrEMBL),   F6Q5H6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001258087   ⟸   NM_001271158
- Peptide Label: isoform 2
- UniProtKB: P27775 (UniProtKB/Swiss-Prot),   Q6AYW3 (UniProtKB/TrEMBL),   A6K4C9 (UniProtKB/TrEMBL),   A0A0G2K371 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256574   ⟸   XM_006256512
- Peptide Label: isoform X1
- UniProtKB: Q8R4R3 (UniProtKB/TrEMBL),   F6Q5H6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256575   ⟸   XM_006256513
- Peptide Label: isoform X1
- UniProtKB: Q8R4R3 (UniProtKB/TrEMBL),   F6Q5H6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256573   ⟸   XM_006256511
- Peptide Label: isoform X1
- UniProtKB: Q8R4R3 (UniProtKB/TrEMBL),   F6Q5H6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000072523   ⟸   ENSRNOT00000082043
RefSeq Acc Id: ENSRNOP00000054176   ⟸   ENSRNOT00000057364
RefSeq Acc Id: ENSRNOP00000001075   ⟸   ENSRNOT00000001075
RefSeq Acc Id: XP_038954344   ⟸   XM_039098416
- Peptide Label: isoform X1
- UniProtKB: Q8R4R3 (UniProtKB/TrEMBL),   F6Q5H6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135027   ⟸   XM_063278957
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063135028   ⟸   XM_063278958
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P27775-F1-model_v2 AlphaFold P27775 1-71 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701636
Promoter ID:EPDNEW_R12160
Type:initiation region
Name:Pkib_1
Description:cAMP-dependent protein kinase inhibitor beta
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02040,618,118 - 40,618,178EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3335 AgrOrtholog
BioCyc Gene G2FUF-3586 BioCyc
Ensembl Genes ENSRNOG00000000811 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000001075 ENTREZGENE
  ENSRNOT00000001075.6 UniProtKB/TrEMBL
  ENSRNOT00000082043.2 UniProtKB/TrEMBL
InterPro cAMP_dep_PKI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 24678 ENTREZGENE
PANTHER CAMP-DEPENDENT PROTEIN KINASE INHIBITOR BETA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR15416 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PKI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pkib PhenoGen
PIRSF PKI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000000811 RatGTEx
TIGR TC219423
UniProt A0A0G2K371 ENTREZGENE, UniProtKB/TrEMBL
  A6K4C9 ENTREZGENE, UniProtKB/TrEMBL
  A6K4D2_RAT UniProtKB/TrEMBL
  F6Q5H6 ENTREZGENE, UniProtKB/TrEMBL
  IPKB_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q6AYW3 ENTREZGENE
  Q8R4R3 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q6AYW3 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-01-03 Pkib  cAMP-dependent protein kinase inhibitor beta  Pkib  protein kinase (cAMP-dependent, catalytic) inhibitor beta  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-07-29 Pkib  protein kinase (cAMP-dependent, catalytic) inhibitor beta  LOC100362071  hypothetical protein LOC100362071  Data merged from RGD:2318911 737654 PROVISIONAL
2010-05-05 LOC100362071  hypothetical protein LOC100362071      Symbol and Name status set to provisional 70820 PROVISIONAL
2009-05-18 Pkib  protein kinase (cAMP-dependent, catalytic) inhibitor beta  Pkib  protein kinase inhibitor beta, (cAMP-dependent, catalytic) inhibitor beta  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-15 Pkib  protein kinase inhibitor beta, (cAMP-dependent, catalytic) inhibitor beta  Pkib  protein kinase inhibitor beta, cAMP dependent, catalytic  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Pkib  protein kinase inhibitor beta, cAMP dependent, catalytic    protein kinase (cAMP dependent, catalytic) inhibitor beta  Name updated 1299863 APPROVED
2002-11-06 Pkib  protein kinase inhibitor, beta    protein kinase inhibitor beta, cAMP dependent, testis specific  Name updated 625702 APPROVED
2001-10-23 Pkib  protein kinase inhibitor beta, cAMP dependent, testis specific      Name updated to reflect Human and Mouse nomenclature 68913 APPROVED
2001-04-10 Prkacn2  cAMP-dependent protein kinase (catalytic subunit binding) inhibitor 2      Symbol withdrawn, duplicate entry of Pkib(RGD:3335) 61478 WITHDRAWN

RGD Curation Notes
Note Type Note Reference
gene_process an alternatively spliced isoform displays some inhibitory activity toward cGMP-dependent protein kinase in addition to strong inhibition of cAMP dependent kinase 729532