Plagl1 (PLAG1 like zinc finger 1) - Rat Genome Database

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Gene: Plagl1 (PLAG1 like zinc finger 1) Rattus norvegicus
Analyze
Symbol: Plagl1
Name: PLAG1 like zinc finger 1
RGD ID: 3014
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II and skeletal muscle cell differentiation. Predicted to be located in Golgi apparatus and nuclear body. Orthologous to human PLAGL1 (PLAG1 like zinc finger 1); INTERACTS WITH (S)-colchicine; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Lost on transformation 1; Lot1; pleiomorphic adenoma gene-like 1; Zac1; zinc finger protein PLAGL1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr819,297,066 - 9,337,394 (+)NCBIGRCr8
mRatBN7.217,477,295 - 7,517,229 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl17,477,177 - 7,517,228 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx17,172,194 - 7,212,067 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0113,171,292 - 13,211,196 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.017,454,454 - 7,494,354 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.017,219,587 - 7,270,169 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl17,252,349 - 7,259,035 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.018,857,033 - 8,906,172 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.417,882,674 - 7,922,504 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.117,882,673 - 7,922,502 (+)NCBI
Celera15,968,740 - 6,008,667 (+)NCBICelera
RH 3.4 Map1113.0RGD
Cytogenetic Map1p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(S)-colchicine  (EXP)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-(hydroxymethyl)cytosine  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
Benzo[k]fluoranthene  (ISO)
bexarotene  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
buta-1,3-diene  (ISO)
C60 fullerene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cobalt dichloride  (ISO)
cocaine  (EXP)
coumarin  (ISO)
crocidolite asbestos  (ISO)
CU-O LINKAGE  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
D-glucose  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (ISO)
dimethylarsinic acid  (EXP)
dorsomorphin  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
gentamycin  (EXP)
geraniol  (ISO)
glucose  (ISO)
indometacin  (ISO)
isoprenaline  (ISO)
kojic acid  (ISO)
L-methionine  (ISO)
lead diacetate  (EXP)
lead(0)  (ISO)
levonorgestrel  (ISO)
lithium chloride  (ISO)
methamphetamine  (EXP)
methimazole  (EXP)
methotrexate  (ISO)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
mitoxantrone  (ISO)
monosodium L-glutamate  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
nickel dichloride  (EXP,ISO)
nickel sulfate  (ISO)
oxaliplatin  (EXP)
paracetamol  (EXP,ISO)
PCB138  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP,ISO)
potassium chromate  (ISO)
quercetin  (ISO)
riboflavin  (ISO)
SB 431542  (ISO)
SCH 23390  (EXP)
sodium arsenite  (ISO)
tamoxifen  (ISO)
tert-butyl hydroperoxide  (ISO)
Testosterone propionate  (ISO)
testosterone undecanoate  (ISO)
tetrachloromethane  (EXP,ISO)
topotecan  (EXP)
Trapidil  (EXP)
Tributyltin oxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vincaleukoblastine  (EXP)
vitamin E  (ISO)
vorinostat  (ISO)
zinc atom  (EXP)
zinc(0)  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Identification of a gene containing zinc-finger motifs based on lost expression in malignantly transformed rat ovarian surface epithelial cells. Abdollahi A, etal., Cancer Res 1997 May 15;57(10):2029-34.
2. Identification of a zinc-finger gene at 6q25: a chromosomal region implicated in development of many solid tumors. Abdollahi A, etal., Oncogene 1997 Apr 24;14(16):1973-9.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:9671765   PMID:15888726   PMID:16061485   PMID:19346254   PMID:19389355   PMID:20363751   PMID:22147266   PMID:24316431  


Genomics

Comparative Map Data
Plagl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr819,297,066 - 9,337,394 (+)NCBIGRCr8
mRatBN7.217,477,295 - 7,517,229 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl17,477,177 - 7,517,228 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx17,172,194 - 7,212,067 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0113,171,292 - 13,211,196 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.017,454,454 - 7,494,354 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.017,219,587 - 7,270,169 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl17,252,349 - 7,259,035 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.018,857,033 - 8,906,172 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.417,882,674 - 7,922,504 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.117,882,673 - 7,922,502 (+)NCBI
Celera15,968,740 - 6,008,667 (+)NCBICelera
RH 3.4 Map1113.0RGD
Cytogenetic Map1p13NCBI
PLAGL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386143,940,300 - 144,064,599 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6143,940,300 - 144,064,599 (-)EnsemblGRCh38hg38GRCh38
GRCh376144,261,437 - 144,385,736 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366144,303,130 - 144,427,428 (-)NCBINCBI36Build 36hg18NCBI36
Build 346144,303,131 - 144,371,246NCBI
Celera6145,001,862 - 145,126,194 (-)NCBICelera
Cytogenetic Map6q24.2NCBI
HuRef6141,825,091 - 141,949,488 (-)NCBIHuRef
CHM1_16144,524,320 - 144,648,632 (-)NCBICHM1_1
T2T-CHM13v2.06145,132,991 - 145,257,328 (-)NCBIT2T-CHM13v2.0
Plagl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391012,966,576 - 13,007,438 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1012,936,248 - 13,007,438 (+)EnsemblGRCm39 Ensembl
GRCm381013,090,832 - 13,131,694 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1013,060,504 - 13,131,694 (+)EnsemblGRCm38mm10GRCm38
MGSCv371012,810,594 - 12,851,500 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361012,781,107 - 12,820,086 (+)NCBIMGSCv36mm8
Celera1012,986,982 - 13,032,881 (+)NCBICelera
Cytogenetic Map10A2NCBI
cM Map104.72NCBI
Plagl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543616,423,216 - 16,510,799 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543616,452,797 - 16,511,872 (+)NCBIChiLan1.0ChiLan1.0
PLAGL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25163,922,068 - 164,048,337 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16161,816,591 - 161,942,741 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06141,715,599 - 141,841,862 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16146,435,427 - 146,480,233 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6146,435,622 - 146,480,224 (-)Ensemblpanpan1.1panPan2
PLAGL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1135,418,470 - 35,529,230 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl135,419,577 - 35,528,530 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha136,314,541 - 36,425,009 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0135,599,733 - 35,710,276 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl135,599,535 - 35,705,542 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1135,460,186 - 35,570,384 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0135,345,452 - 35,455,508 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0135,655,698 - 35,766,229 (-)NCBIUU_Cfam_GSD_1.0
Plagl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946130,370,449 - 130,389,005 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366252,248,907 - 2,263,001 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366252,214,023 - 2,265,101 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLAGL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl121,364,696 - 21,370,614 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1121,299,830 - 21,371,070 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2123,640,710 - 23,708,147 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PLAGL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11329,225,265 - 29,291,868 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1329,283,405 - 29,291,868 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660401,359,309 - 1,426,279 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plagl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475310,292,038 - 10,359,480 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475310,292,050 - 10,359,424 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Plagl1
252 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:134
Count of miRNA genes:113
Interacting mature miRNAs:117
Transcripts:ENSRNOT00000030329
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1132356093Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)150910843284926Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1224439043433040Rat
1300170Rf6Renal function QTL 63.14renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)1416280711481482Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1439328949393289Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1592587724697545Rat

Markers in Region
RH134421  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 Map1113.0UniSTS
Cytogenetic Map1p13UniSTS
RH142316  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.018,894,888 - 8,895,040NCBIRnor5.0
RGSC_v3.417,920,385 - 7,920,536UniSTSRGSC3.4
Celera16,006,548 - 6,006,699UniSTS
RH 3.4 Map1113.0UniSTS
Cytogenetic Map1p13UniSTS
BI301647  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.217,487,703 - 7,487,913 (+)MAPPERmRatBN7.2
Rnor_6.017,230,013 - 7,230,222NCBIRnor6.0
Rnor_5.018,867,486 - 8,867,695UniSTSRnor5.0
RGSC_v3.417,892,982 - 7,893,191UniSTSRGSC3.4
Celera15,979,130 - 5,979,339UniSTS
RH 3.4 Map1727.3UniSTS
Cytogenetic Map1p13UniSTS
RH140572  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.217,501,921 - 7,502,105 (+)MAPPERmRatBN7.2
Rnor_6.017,244,230 - 7,244,413NCBIRnor6.0
Rnor_5.018,881,703 - 8,881,886UniSTSRnor5.0
RGSC_v3.417,907,199 - 7,907,382UniSTSRGSC3.4
Celera15,993,347 - 5,993,530UniSTS
RH 3.4 Map1106.72UniSTS
Cytogenetic Map1p13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 24 20 14 14 1 1 55 24 30 3 1
Low 3 14 21 13 8 13 7 10 19 11 11 8 7
Below cutoff 5 15 13 10 13

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000030329   ⟹   ENSRNOP00000030918
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl17,477,177 - 7,517,228 (+)Ensembl
Rnor_6.0 Ensembl17,252,349 - 7,259,035 (+)Ensembl
RefSeq Acc Id: NM_012760   ⟹   NP_036892
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr819,297,464 - 9,337,394 (+)NCBI
mRatBN7.217,477,295 - 7,517,229 (+)NCBI
Rnor_6.017,219,587 - 7,270,169 (+)NCBI
Rnor_5.018,857,033 - 8,906,172 (+)NCBI
RGSC_v3.417,882,674 - 7,922,504 (+)RGD
Celera15,968,740 - 6,008,667 (+)RGD
Sequence:
RefSeq Acc Id: XM_063281340   ⟹   XP_063137410
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr819,297,427 - 9,337,394 (+)NCBI
RefSeq Acc Id: XM_063281341   ⟹   XP_063137411
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr819,297,427 - 9,337,394 (+)NCBI
RefSeq Acc Id: XM_063281345   ⟹   XP_063137415
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr819,297,066 - 9,337,394 (+)NCBI
RefSeq Acc Id: XM_063281350   ⟹   XP_063137420
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr819,297,427 - 9,337,394 (+)NCBI
RefSeq Acc Id: XM_063281356   ⟹   XP_063137426
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr819,297,427 - 9,337,394 (+)NCBI
RefSeq Acc Id: XM_063281358   ⟹   XP_063137428
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr819,297,427 - 9,337,394 (+)NCBI
RefSeq Acc Id: XM_063281361   ⟹   XP_063137431
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr819,297,427 - 9,337,394 (+)NCBI
RefSeq Acc Id: XM_063281365   ⟹   XP_063137435
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr819,297,427 - 9,337,394 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_036892   ⟸   NM_012760
- UniProtKB: P70616 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000030918   ⟸   ENSRNOT00000030329
RefSeq Acc Id: XP_063137415   ⟸   XM_063281345
- Peptide Label: isoform X1
- UniProtKB: P70616 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137426   ⟸   XM_063281356
- Peptide Label: isoform X1
- UniProtKB: P70616 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137420   ⟸   XM_063281350
- Peptide Label: isoform X1
- UniProtKB: P70616 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137428   ⟸   XM_063281358
- Peptide Label: isoform X1
- UniProtKB: P70616 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137431   ⟸   XM_063281361
- Peptide Label: isoform X1
- UniProtKB: P70616 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137435   ⟸   XM_063281365
- Peptide Label: isoform X1
- UniProtKB: P70616 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137410   ⟸   XM_063281340
- Peptide Label: isoform X1
- UniProtKB: P70616 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063137411   ⟸   XM_063281341
- Peptide Label: isoform X1
- UniProtKB: P70616 (UniProtKB/TrEMBL)
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P70616-F1-model_v2 AlphaFold P70616 1-583 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3014 AgrOrtholog
BioCyc Gene G2FUF-62367 BioCyc
Ensembl Genes ENSRNOG00000025587 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000030329 ENTREZGENE
  ENSRNOT00000030329.4 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report rno:25157 UniProtKB/TrEMBL
NCBI Gene 25157 ENTREZGENE
PANTHER ZGC:162958 PROTEIN-RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 200 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN PLAGL2 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PhenoGen Plagl1 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000025587 RatGTEx
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
TIGR TC229742
UniProt A6JP53_RAT UniProtKB/TrEMBL
  P70616 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-23 Plagl1  PLAG1 like zinc finger 1  Plagl1  pleiomorphic adenoma gene-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-11-06 Plagl1  pleiomorphic adenoma gene-like 1  Lot1  Lost on transformation 1  Symbol and Name updated 625702 APPROVED
2002-06-10 Lot1  Lost on transformation 1      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_domains contains seven C2H2 zinc-finger motifs and proline-, gutamine-, and glutamic acid-rich areas 633534