H1f6 (H1.6 linker histone, cluster member) - Rat Genome Database

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Gene: H1f6 (H1.6 linker histone, cluster member) Rattus norvegicus
Analyze
Symbol: H1f6
Name: H1.6 linker histone, cluster member
RGD ID: 2778
Description: Predicted to enable double-stranded DNA binding activity and nucleosomal DNA binding activity. Involved in spermatogenesis. Predicted to be located in condensed nuclear chromosome. Predicted to be part of nucleosome. Predicted to be active in nucleus. Orthologous to human H1-6 (H1.6 linker histone, cluster member); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: H1 histone family member 3; H1 histone family member T (testis-specific); H1 histone family, member 3; H1 histone family, member T (testis-specific); H1-6; H1.3; H1D; H1f3; H1ft; H1s-4; H1t; Hist1h1t; histone 1 a family 3; histone 1 family 3; histone 1, family 3; histone 1, H1t; histone 1t; histone cluster 1 H1 family member t; histone cluster 1, H1t; histone H1t; Testis-specific histone 1; Testis-specific histone 1 probably same as Hh1tts; testis-specific histone 1, probably same as Hh1tts
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81741,855,216 - 41,855,960 (-)NCBIGRCr8
mRatBN7.21741,427,365 - 41,428,109 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1741,427,323 - 41,428,119 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1741,503,845 - 41,504,589 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01743,107,898 - 43,108,642 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01741,386,612 - 41,387,356 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01743,675,190 - 43,675,934 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1743,675,190 - 43,675,934 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01745,513,826 - 45,531,456 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41748,463,316 - 48,464,060 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11748,466,156 - 48,466,901 (+)NCBI
Celera1741,059,775 - 41,060,519 (-)NCBICelera
Cytogenetic Map17p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Isolation of the gene for the testis-specific H1 histone variant H1t. Cole KD, etal., J Biol Chem 1986 Jun 5;261(16):7178-83.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
9. Messenger RNA profiles in liver injury and stress: a comparison of lethal and nonlethal rat models. Tygstrup N, etal., Biochem Biophys Res Commun 2002 Jan 11;290(1):518-25.
10. H1t/GC-box and H1t/TE1 element are essential for promoter activity of the testis-specific histone H1t gene. Wilkerson DC, etal., Biol Reprod 2002 Oct;67(4):1157-64.
11. Protein-DNA interactions within the rat histone H4t promoter. Wolfe SA and Grimes SR, J Biol Chem 1991 Apr 5;266(10):6637-43.
Additional References at PubMed
PMID:2386482   PMID:3947637   PMID:9040779   PMID:15051954   PMID:15229132   PMID:15562002   PMID:15631990   PMID:15685642   PMID:16006555   PMID:16676351   PMID:17052712   PMID:18247329  
PMID:18283110   PMID:18316482   PMID:19043117   PMID:21630459   PMID:22871113  


Genomics

Comparative Map Data
H1f6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81741,855,216 - 41,855,960 (-)NCBIGRCr8
mRatBN7.21741,427,365 - 41,428,109 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1741,427,323 - 41,428,119 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1741,503,845 - 41,504,589 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01743,107,898 - 43,108,642 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01741,386,612 - 41,387,356 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01743,675,190 - 43,675,934 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1743,675,190 - 43,675,934 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01745,513,826 - 45,531,456 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41748,463,316 - 48,464,060 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11748,466,156 - 48,466,901 (+)NCBI
Celera1741,059,775 - 41,060,519 (-)NCBICelera
Cytogenetic Map17p11NCBI
H1-6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38626,107,412 - 26,108,135 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl626,107,412 - 26,108,135 (-)EnsemblGRCh38hg38GRCh38
GRCh37626,107,640 - 26,108,363 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36626,215,619 - 26,216,343 (-)NCBINCBI36Build 36hg18NCBI36
Build 34626,215,618 - 26,216,343NCBI
Celera627,336,922 - 27,337,646 (-)NCBICelera
Cytogenetic Map6p22.2NCBI
HuRef626,050,697 - 26,051,421 (-)NCBIHuRef
CHM1_1626,109,895 - 26,110,619 (-)NCBICHM1_1
T2T-CHM13v2.0625,975,560 - 25,976,283 (-)NCBIT2T-CHM13v2.0
H1f6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391323,879,794 - 23,880,528 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1323,879,797 - 23,880,708 (+)EnsemblGRCm39 Ensembl
GRCm381323,695,811 - 23,696,545 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1323,695,814 - 23,696,725 (+)EnsemblGRCm38mm10GRCm38
MGSCv371323,787,680 - 23,788,591 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361323,703,276 - 23,704,005 (+)NCBIMGSCv36mm8
Celera1323,927,130 - 23,928,038 (+)NCBICelera
Cytogenetic Map13A3.1NCBI
cM Map139.88NCBI
H1-6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2540,752,425 - 40,758,889 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1636,753,861 - 36,758,721 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0625,941,055 - 25,943,565 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1626,600,402 - 26,601,119 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl626,600,454 - 26,601,083 (-)Ensemblpanpan1.1panPan2
H1-6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13524,046,374 - 24,065,892 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3524,044,188 - 24,047,810 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3523,922,755 - 23,944,390 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03524,159,384 - 24,181,022 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3524,162,252 - 24,162,890 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13523,975,584 - 23,997,213 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03524,026,653 - 24,031,602 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03525,459,273 - 25,480,911 (-)NCBIUU_Cfam_GSD_1.0
H1-6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049461,664,332 - 1,666,678 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366711,955,327 - 1,955,962 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366711,954,740 - 1,956,298 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
H1-6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl720,775,859 - 20,776,497 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1720,774,135 - 20,777,244 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
H1-6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11746,147,280 - 46,149,129 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1746,148,286 - 46,148,909 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604426,042,039 - 26,043,822 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in H1f6
1 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317054Aia12Adjuvant induced arthritis QTL 124.24joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)173828150983281509Rat
2317060Aia26Adjuvant induced arthritis QTL 263.22joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)173828150983281509Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)173136839173951021Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172702794960463643Rat
7394837Memor18Memory QTL 18exploratory behavior trait (VT:0010471)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)171864018263640182Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)172840914773409147Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)172840914773409147Rat
631497Bp98Blood pressure QTL 983.66arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)174135465160463643Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318457246843Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)173455084373951021Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17452803849528038Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172459934069599340Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172129303960781592Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1354659Scl68Serum cholesterol level QTL 683.9blood VLDL cholesterol amount (VT:0005144)blood very low density lipoprotein cholesterol level (CMO:0000648)171578159260781592Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173199078481292925Rat
1358295Aocep1Aortic cell protein QTL 16.10.00000071thoracic aorta cellular protein amount (VT:0010598)aortic cell percentage174099000585990005Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318468653184Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172702794956836890Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174054004180387013Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172308056759555013Rat
70157Niddm32Non-insulin dependent diabetes mellitus QTL 324.34blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)172245492450909196Rat
724528Uae4Urinary albumin excretion QTL 44.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)173583708569599340Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)172738994653481766Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17452803849528038Rat
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173199078476990784Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172365318468653184Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)173747984782479847Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172365318468653184Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172365318470974005Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171533061355836425Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173136839162109574Rat
2303561Bw91Body weight QTL 912body mass (VT:0001259)body weight (CMO:0000012)17886846253868462Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172365318468653184Rat
2313854Bp343Blood pressure QTL 3433.9life span trait (VT:0005372)age at time of death (CMO:0001193)173199078450909196Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172365318468653184Rat

Markers in Region
D17Mgh3  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21741,429,815 - 41,429,923 (+)MAPPERmRatBN7.2
Rnor_6.01743,677,641 - 43,677,748NCBIRnor6.0
Rnor_5.01745,531,845 - 45,531,952UniSTSRnor5.0
RGSC_v3.41748,461,501 - 48,461,609RGDRGSC3.4
RGSC_v3.41748,461,502 - 48,461,609UniSTSRGSC3.4
RGSC_v3.11748,464,342 - 48,464,450RGD
Celera1741,062,226 - 41,062,333UniSTS
Cytogenetic Map17p11UniSTS
D17Wox14  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21741,429,765 - 41,429,922 (+)MAPPERmRatBN7.2
Rnor_6.01743,677,591 - 43,677,747NCBIRnor6.0
Rnor_5.01745,531,795 - 45,531,951UniSTSRnor5.0
RGSC_v3.41748,461,503 - 48,461,659UniSTSRGSC3.4
Celera1741,062,176 - 41,062,332UniSTS
Cytogenetic Map17p11UniSTS
PMC123630P2  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01745,529,526 - 45,530,077NCBIRnor5.0
RGSC_v3.41748,463,377 - 48,463,927UniSTSRGSC3.4
Cytogenetic Map17p11UniSTS
UniSTS:491320  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21741,427,368 - 41,428,068 (+)MAPPERmRatBN7.2
Rnor_6.01743,675,194 - 43,675,893NCBIRnor6.0
Rnor_5.01745,529,398 - 45,530,097UniSTSRnor5.0
RGSC_v3.41748,463,357 - 48,464,056UniSTSRGSC3.4
Celera1741,059,779 - 41,060,478UniSTS
Cytogenetic Map17p11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3
Low 2 4 16 2 14 2 5 7 18 19 27 11 5
Below cutoff 1 37 36 34 5 34 3 4 54 16 10 3

Sequence


RefSeq Acc Id: ENSRNOT00000081345   ⟹   ENSRNOP00000070024
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1741,427,323 - 41,428,119 (-)Ensembl
Rnor_6.0 Ensembl1743,675,190 - 43,675,934 (-)Ensembl
RefSeq Acc Id: NM_012579   ⟹   NP_036711
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81741,855,216 - 41,855,960 (-)NCBI
mRatBN7.21741,427,365 - 41,428,109 (-)NCBI
Rnor_6.01743,675,190 - 43,675,934 (-)NCBI
Rnor_5.01745,513,826 - 45,531,456 (-)NCBI
RGSC_v3.41748,463,316 - 48,464,060 (+)RGD
Celera1741,059,775 - 41,060,519 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_036711 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA41305 (Get FASTA)   NCBI Sequence Viewer  
  AAA41328 (Get FASTA)   NCBI Sequence Viewer  
  EDL86576 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000070024
  ENSRNOP00000070024.1
  ENSRNOP00055006725
  ENSRNOP00060020692
  ENSRNOP00065031793
GenBank Protein P06349 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_036711   ⟸   NM_012579
- UniProtKB: P06349 (UniProtKB/Swiss-Prot),   A6KLN1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000070024   ⟸   ENSRNOT00000081345
Protein Domains
H15

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P06349-F1-model_v2 AlphaFold P06349 1-208 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700462
Promoter ID:EPDNEW_R10986
Type:multiple initiation site
Name:Hist1h1t_1
Description:histone cluster 1 H1 family member t
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01743,675,934 - 43,675,994EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2778 AgrOrtholog
BioCyc Gene G2FUF-9377 BioCyc
Ensembl Genes ENSRNOG00000061863 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00055005501 UniProtKB/Swiss-Prot
  ENSRNOG00060015098 UniProtKB/Swiss-Prot
  ENSRNOG00065022918 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000081345 ENTREZGENE
  ENSRNOT00000081345.2 UniProtKB/Swiss-Prot
  ENSRNOT00055008835 UniProtKB/Swiss-Prot
  ENSRNOT00060025872 UniProtKB/Swiss-Prot
  ENSRNOT00065039139 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro H1/H5 UniProtKB/TrEMBL
  Histone_H1/H5_H15 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Histone_H5 UniProtKB/Swiss-Prot
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:24438 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 24438 ENTREZGENE
Pfam Linker_histone UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen H1f6 PhenoGen
PRINTS HISTONEH5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE H15 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000061863 RatGTEx
  ENSRNOG00055005501 RatGTEx
  ENSRNOG00060015098 RatGTEx
  ENSRNOG00065022918 RatGTEx
SMART H15 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC201866
  TC219100
UniProt A6KLN1 ENTREZGENE, UniProtKB/TrEMBL
  H1T_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-13 H1f6  H1.6 linker histone, cluster member  Hist1h1t  histone cluster 1 H1 family member t  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-10-12 Hist1h1t  histone cluster 1 H1 family member t  Hist1h1t  histone cluster 1, H1t  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-07 Hist1h1t  histone cluster 1, H1t    histone 1, H1t  Name updated 1299863 APPROVED
2003-04-09 Hist1h1t  histone 1, H1t      Symbol and Name updated 629477 APPROVED
2003-03-13 Hist1h1t  histone 1, H1t  H1f3  H1 histone family, member 3  Data merged from RGD:67386 628472 PROVISIONAL
2002-06-10 H1t  Testis-specific histone 1      Symbol and Name status set to approved 70586 APPROVED
2002-06-10 H1f3  H1 histone family, member 3      Name updated 70584 APPROVED
2001-10-23 H1f3  histone 1, family 3      Name updated 68916 RESERVED

RGD Curation Notes
Note Type Note Reference
gene_expression induced expression during hepatocyte regeneration after certain types of liver damage 70249
gene_protein 207-amino acid protein 632861