Fhl1 (four and a half LIM domains 1)

Gene: Fhl1 (four and a half LIM domains 1) Rattus norvegicus

Analyze

Symbol:

Fhl1

Name:

four and a half LIM domains 1

RGD ID:

2615

Description:

Predicted to enable transmembrane transporter binding activity. Predicted to be involved in several processes, including negative regulation of mitotic cell cycle phase transition; positive regulation of potassium ion transport; and regulation of membrane depolarization. Predicted to be located in cytosol; nucleus; and plasma membrane. Human ortholog(s) of this gene implicated in Uruguay faciocardiomusculoskeletal syndrome; X-linked Emery-Dreifuss muscular dystrophy 6; reducing body myopathy 1A; and reducing body myopathy 1B. Orthologous to human FHL1 (four and a half LIM domains 1); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

FHL-1; four and a half LIM domains 1 (skeletal muscle LIM-protein 1); four and a half LIM domains protein 1; skeletal muscle LIM-protein 1; SLIM1

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FHL1 (four and a half LIM domains 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB
Mus musculus (house mouse):	Fhl1 (four and a half LIM domains 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Fhl1 (four and a half LIM domains 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FHL1 (four and a half LIM domains 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FHL1 (four and a half LIM domains 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Fhl1 (four and a half LIM domains 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FHL1 (four and a half LIM domains 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FHL1 (four and a half LIM domains 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Fhl1 (four and a half LIM domains 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Fhl1 (four and a half LIM domains 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	FHL1 (four and a half LIM domains 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Danio rerio (zebrafish):	fhl1a (four and a half LIM domains 1a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	fhl1b (four and a half LIM domains 1b)	Alliance	DIOPT (Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	fhl1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	139,592,794 - 139,652,290 (+)	NCBI		GRCr8
mRatBN7.2	X	134,555,399 - 134,614,930 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	134,555,479 - 134,614,928 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	136,752,757 - 136,811,835 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	140,307,326 - 140,366,426 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	137,876,719 - 137,935,825 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	159,112,516 - 159,172,528 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	159,112,880 - 159,172,524 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	153,743,208 - 153,803,160 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	141,315,765 - 141,329,278 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	X	141,389,200 - 141,401,948 (+)	NCBI
Celera	X	142,605,050 - 142,663,917 (+)	NCBI		Celera
Cytogenetic Map	X	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Christianson syndrome (ISO)

Congenital Heart Defects, Multiple Types, 1, X-Linked (ISO)

diastolic heart failure (ISO)

Experimental Liver Cirrhosis (ISO)

Familial Hemophagocytic Lymphohistiocytoses (ISO)

familial hypertrophic cardiomyopathy (ISO)

genetic disease (ISO)

hypertrophic cardiomyopathy (ISO)

hypertrophic cardiomyopathy 1 (ISO)

Muscle Weakness (ISO)

reducing body myopathy 1A (ISO)

reducing body myopathy 1B (ISO)

scapuloperoneal myopathy (ISS)

syndromic X-linked intellectual disability Lubs type (ISO)

Uruguay faciocardiomusculoskeletal syndrome (ISO)

X-linked Emery-Dreifuss muscular dystrophy 6 (ISO)

X-linked hyper IgM syndrome (ISO)

X-Linked Scapuloperoneal Muscular Dystrophy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4,6-tribromophenol (ISO)

25-hydroxycholesterol (EXP)

3,3',5,5'-tetrabromobisphenol A (ISO)

4,4'-diaminodiphenylmethane (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

9-cis-retinoic acid (EXP)

acrylamide (EXP)

actinomycin D (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

Allylamine (EXP)

ammonium chloride (EXP)

aristolochic acid A (ISO)

arsenous acid (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

beta-naphthoflavone (EXP,ISO)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

bleomycin A2 (EXP)

brefeldin A (EXP)

caffeine (EXP)

cannabidiol (ISO)

capecitabine (ISO)

carbofuran (EXP)

carbon nanotube (ISO)

CGP 52608 (ISO)

chloroform (EXP)

chloropicrin (ISO)

cobalt dichloride (EXP)

copper atom (ISO)

copper(0) (ISO)

coumestrol (ISO)

crocidolite asbestos (ISO)

cumene (ISO)

Cuprizon (EXP)

cycloheximide (EXP)

cyclophosphamide (EXP)

decabromodiphenyl ether (ISO)

dexamethasone (ISO)

dextran sulfate (ISO)

diarsenic trioxide (ISO)

dibenz[a,h]anthracene (ISO)

dibenzo[a,l]pyrene (ISO)

dioxygen (EXP)

diuron (EXP)

dorsomorphin (ISO)

doxifluridine (ISO)

doxorubicin (EXP,ISO)

endosulfan (EXP)

entinostat (ISO)

enzyme inhibitor (ISO)

epoxiconazole (ISO)

ethanol (ISO)

etoposide (ISO)

folic acid (ISO)

FR900359 (ISO)

furan (EXP)

genistein (EXP)

gentamycin (EXP)

isoprenaline (EXP,ISO)

ivermectin (ISO)

lead nitrate (EXP)

lead(0) (ISO)

lipopolysaccharide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

metaproterenol (EXP)

methapyrilene (EXP)

methoxyacetic acid (EXP)

methylmercury chloride (EXP)

milrinone (EXP)

mitomycin C (ISO)

mitoxantrone (EXP)

Monobutylphthalate (EXP)

N-nitrosodiethylamine (EXP)

N-nitrosodimethylamine (EXP)

nickel atom (ISO)

orciprenaline (EXP)

oxaliplatin (EXP,ISO)

ozone (ISO)

paclitaxel (ISO)

paracetamol (EXP,ISO)

perfluorooctanoic acid (ISO)

phenylephrine (EXP)

phenylmercury acetate (ISO)

pioglitazone (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

quercetin (EXP)

raloxifene (ISO)

rotenone (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

sodium arsenite (EXP)

sodium fluoride (EXP)

sulforaphane (ISO)

sunitinib (ISO)

tamoxifen (EXP,ISO)

temozolomide (ISO)

tert-butyl hydroperoxide (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP,ISO)

trichloroethene (EXP)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IEA)

muscle organ development (IEA)

negative regulation of cell growth (ISO)

negative regulation of G1/S transition of mitotic cell cycle (ISO)

negative regulation of G2/M transition of mitotic cell cycle (ISO)

positive regulation of potassium ion transport (ISO)

regulation of membrane depolarization (ISO)

Cellular Component

cytoplasm (ISO)

cytosol (ISO)

nucleus (ISO)

plasma membrane (ISO)

Molecular Function

metal ion binding (IEA)

protein binding (ISO)

transmembrane transporter binding (IBA,IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Expression profiling of cardiac genes in human hypertrophic cardiomyopathy: insight into the pathogenesis of phenotypes.	Lim DS, etal., J Am Coll Cardiol. 2001 Oct;38(4):1175-80.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:8889548	PMID:17161435	PMID:18281375	PMID:18756007	PMID:20149813	PMID:21126853	PMID:21423176	PMID:21702045	PMID:23628900	PMID:24265776	PMID:25931508	PMID:25975448
PMID:26316108

Genomics

Comparative Map Data

Fhl1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	139,592,794 - 139,652,290 (+)	NCBI		GRCr8
mRatBN7.2	X	134,555,399 - 134,614,930 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	134,555,479 - 134,614,928 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	136,752,757 - 136,811,835 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	140,307,326 - 140,366,426 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	137,876,719 - 137,935,825 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	159,112,516 - 159,172,528 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	159,112,880 - 159,172,524 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	153,743,208 - 153,803,160 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	141,315,765 - 141,329,278 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	X	141,389,200 - 141,401,948 (+)	NCBI
Celera	X	142,605,050 - 142,663,917 (+)	NCBI		Celera
Cytogenetic Map	X	q36	NCBI

FHL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	136,146,702 - 136,211,359 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	136,146,702 - 136,211,359 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	135,228,861 - 135,293,518 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	135,057,346 - 135,121,176 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	134,955,199 - 135,019,028	NCBI
Celera	X	135,591,521 - 135,656,168 (+)	NCBI		Celera
Cytogenetic Map	X	q26.3	NCBI
HuRef	X	124,502,588 - 124,565,831 (+)	NCBI		HuRef
CHM1_1	X	135,139,444 - 135,204,087 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	134,455,091 - 134,519,750 (+)	NCBI		T2T-CHM13v2.0

Fhl1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	55,776,569 - 55,838,704 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	55,777,147 - 55,838,706 (+)	Ensembl		GRCm39 Ensembl
GRCm38	X	56,731,209 - 56,793,346 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	56,731,787 - 56,793,346 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	53,984,964 - 54,046,523 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	53,078,598 - 53,140,127 (+)	NCBI		MGSCv36	mm8
Celera	X	43,224,152 - 43,274,965 (+)	NCBI		Celera
Cytogenetic Map	X	A6	NCBI
cM Map	X	30.06	NCBI

Fhl1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955489	8,888,779 - 8,901,970 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955489	8,888,845 - 8,944,778 (-)	NCBI	ChiLan1.0	ChiLan1.0

FHL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	135,559,521 - 135,624,166 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	135,563,121 - 135,627,771 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	125,270,340 - 125,334,961 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	135,538,152 - 135,602,375 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	135,559,321 - 135,602,375 (+)	Ensembl	panpan1.1		panPan2

FHL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	106,542,450 - 106,604,494 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	106,590,988 - 106,604,029 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	92,361,797 - 92,424,954 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	108,518,918 - 108,582,088 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	108,518,948 - 108,582,088 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	105,662,634 - 105,725,800 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	107,839,961 - 107,904,929 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	107,494,648 - 107,557,811 (+)	NCBI		UU_Cfam_GSD_1.0

Fhl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	104,530,356 - 104,588,870 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936513	11,025,715 - 11,064,312 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936513	11,025,753 - 11,064,312 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FHL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	111,356,011 - 111,367,903 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	111,309,989 - 111,367,900 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	127,231,947 - 127,289,864 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3
Pig Cytomap	X	q23-q24	NCBI

FHL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	111,160,389 - 111,226,713 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	111,211,911 - 111,226,841 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666065	48,829,354 - 48,897,371 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fhl1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624808	10,924,248 - 10,965,164 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624808	10,924,606 - 10,984,422 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Fhl1
119 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	946
Count of miRNA genes:	295
Interacting mature miRNAs:	391
Transcripts:	ENSRNOT00000001169, ENSRNOT00000043820
Prediction methods:	Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1598837	Memor13	Memory QTL 13	3.2		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	41052407	146860749	Rat
1598872	Memor14	Memory QTL 14	4.5		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	93956491	138956491	Rat
738025	Stresp3	Stress response QTL 3	4.61	0.0066	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	100567703	150256146	Rat
1598809	Memor15	Memory QTL 15	4.4		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	103312877	148312877	Rat
1598856	Memor1	Memory QTL 1	1.9		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	X	103312877	148312877	Rat
738029	Stresp2	Stress response QTL 2	3.4	0.0004	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	112934952	138400867	Rat
10059603	Bw174	Body weight QTL 174	3.4	0.025	body mass (VT:0001259)	body weight (CMO:0000012)	X	113937816	152453651	Rat
634346	Insul4	Insulin level QTL 4	0		blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	X	126975089	152453651	Rat

Markers in Region

AI556806

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	134,614,703 - 134,614,892 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	159,172,302 - 159,172,490	NCBI	Rnor6.0
Rnor_5.0	X	153,802,934 - 153,803,122	UniSTS	Rnor5.0
RGSC_v3.4	X	141,329,057 - 141,329,245	UniSTS	RGSC3.4
Celera	X	142,663,691 - 142,663,879	UniSTS
RH 3.4 Map	X	952.91	UniSTS
Cytogenetic Map	X	q36	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High							3	3				1	3
Medium	3	43	29	18	14	18	5	8	74	35	38	10	5
Low			28	23	5	23					3
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001033926	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001271199	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001271200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001271201	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_145669	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006257671	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006257672	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006257673	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006257674	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006257675	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006257676	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF134773	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY115564	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC061782	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB702630	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474106	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK477468	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK840296	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM042472	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ119120	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216526	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217594	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000001169 ⟹ ENSRNOP00000001169

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	134,601,136 - 134,614,920 (+)	Ensembl
Rnor_6.0 Ensembl	X	159,158,194 - 159,172,518 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000043820 ⟹ ENSRNOP00000049677

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	134,555,479 - 134,614,755 (+)	Ensembl
Rnor_6.0 Ensembl	X	159,158,194 - 159,172,518 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000083502 ⟹ ENSRNOP00000072490

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	134,601,137 - 134,614,924 (+)	Ensembl
Rnor_6.0 Ensembl	X	159,158,195 - 159,172,524 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000084594 ⟹ ENSRNOP00000074052

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	134,555,694 - 134,614,926 (+)	Ensembl
Rnor_6.0 Ensembl	X	159,112,880 - 159,172,518 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000087274 ⟹ ENSRNOP00000074817

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	134,608,976 - 134,614,924 (+)	Ensembl
Rnor_6.0 Ensembl	X	159,165,169 - 159,172,518 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000110431 ⟹ ENSRNOP00000088085

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	134,601,030 - 134,614,928 (+)	Ensembl

RefSeq Acc Id:

NM_001033926 ⟹ NP_001029098

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	139,638,496 - 139,652,290 (+)	NCBI
mRatBN7.2	X	134,601,136 - 134,614,930 (+)	NCBI
Rnor_6.0	X	159,158,194 - 159,172,528 (+)	NCBI
Rnor_5.0	X	153,743,208 - 153,803,160 (+)	NCBI
RGSC_v3.4	X	141,315,765 - 141,329,278 (+)	RGD
Celera	X	142,650,349 - 142,663,917 (+)	NCBI

Sequence:

show sequence

ATGTATGTTCACAAATGAGCCTCATCATCTGGGCTTGAGAGAAGACGGGTGTAGGTGCCGCTCC
TGAACTTGGCCTCTGAGCCATGGCTTCTCAAAGACACTCAGGTCCCTCCAGCTATAAGGTGGGC
ACCATGTCTGAGAAGTTCGACTGTCACTACTGCAGGGACCCCTTGCAGGGGAAGAAGTATGTGC
AGAAGGATGGCCGTCACTGCTGCCTGAAGTGCTTTGACAAGTTCTGCGCCAACACCTGCGTGGA
ATGCCGCAAGCCCATAAGCGCTGATGCTAAGGAGGTGCACTATAAGAATCGCTACTGGCACGAC
ACCTGCTTCCGCTGTGCCAAGTGCCTTCACCCCTTGGCCAGTGAGACCTTTGTGTCCAAGGATG
GCAAGATCCTGTGCAACAAGTGCGCCACTCGGGAGGACTCCCCCAGGTGCAAAGGGTGCTTCAA
GGCCATTGTGGCAGGAGACCAGAATGTGGAGTACAAGGGCACCATCTGGCATAAAGACTGCTTC
ACCTGCAGCAACTGCAAGCAAGTCATTGGGACCGGAAGCTTCTTCCCGAAAGGGGAGGACTTCT
ACTGTGTGACTTGCCATGAGACCAAGTTTGCCAAGCATTGCGTGAAATGCAACAAGGCCATCAC
ATCTGGAGGAATCACTTACCAGGATCAGCCCTGGCATGCCGAGTGCTTTGTGTGTGTTACCTGC
TCTAAGAAGCTGGCGGGGCAGCGTTTCACCGCTGTGGAGGACCAGTATTACTGCGTGGATTGCT
ACAAGAACTTTGTGGCCAAGAAGTGTGCTGGATGCAAGAACCCCATCACTGGGTTTGGTAAAGG
CTCCAGTGTGGTGGCCTATGAAGGACAATCCTGGCACGACTACTGCTTCCACTGCAAAAAATGC
TCCGTGAATCTGGCCAACAAGCGCTTTGTCTTTCATAATGAGCAGGTGTATTGTCCTGACTGTG
CCAAAAAGCTGTAACTTGACAGGGGCTCCTGTCCTGTAAAATGGCATTTGAAGCATACTTTGTG
TCCTTTGCTCACTCTCTCTGCACCATCCATAGGGCAAGAGTGGGCTTTCACCTCTTTCAAATTG
CTCTTTCTGTCTTTGCTCTCATTTTACAGTATTAATCAACCGAGGACACACAGTGATCATATTA
GAATTTAGAAAAGAGCAACCTCGCAGCAAAAATAATTTCTCTGTTGCTGCAATGGCAAAACAAA
AACGTAGACTGACTCTTCTGCATGTTTCCCATAGAGCAGAAAAGTGCTAACCATGTAGCCACTT
CATGATGCAAGCAAAAAGCATAGGCGACAAAGTTCCCACTGAGATGCCTTTGGGGCTCAGTCGG
GACGCACTGTGCGGTCACGTGACTGCTGTGCAGGAGTTGCAGCGGCTGCTCCAACTCCCTCCTC
GCCTTTTTAAGAACTTGCCAGAATGCATGGTTTAACTTCCTTATCAAAACTCTGACCTCCCTTC
TGTTCTTTTGTGCTTTCACACGACTAACACAGATTTCCAGAGAACTAACATTTTGAACTTTGCT
GTAATTCTCAAGTGACTTTCCCCCCCTACTAATGTTTGACTCCCCTATGTGGCGTGTTCTCTGA
GCGTTCCTACTTTAAACCATGGAACACAGGTGATTTGGAGCACCTAAGCAGATCTGAGCAAACA
AGCCTGTTTCAGAACAAACTCGCCACGGTGACTACTTCTGGAAGCTTAACAAGACTAACTCTCC
TGTCCTTTTTCATTTTTTTTAAAAATTTTGTTTTAATGAGTAGTAAAATAGTTTATGGAGTTGG
AAACTTGCATGACAATATATGAGCCTCCTCAAACGTTCCTGCAGTTTTGCGATTGATCCTGTAG
AAGTGACAAAAGCTCTAGAGTGGCAGCTGAGCAGGCACAGGGCTGTCATCAACAAGAATACGTT
TCAAAGTAGTGACAAGGTGAAGTCCTTGTAGCATAACCATTGTCTGCTCTTTGTCTGCGTTCAG
GAAGAGTGCAGAGTCCCTTTCCTTGTGATTCCTAGAGAACTTTCCCTGCAGAGTTGAGTTAGAT
CTCTGGGGCTGTCAGGGTAGCCCTCACCCTTTACAGGCAGGGCTGGGTTTCCTCCTCCTCTGAA
ATGCAGGATTGCCTCCCTGATCGTACTCTCCATTATACCACATGTATAACGAGCCAATATCAAA
GTAAAGATGTAATGAAAATACACTCATATATTACTGTAGGAGTGCTTCTAGATGCCCACACCTC
ATTTCCATATTTGTCATTAGCTGTTTCCATCGAATGTTTCAATGTATCCTTACAAAAATAAAGC
AGCATAGAAAGAACAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001271199 ⟹ NP_001258128

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	139,593,180 - 139,652,290 (+)	NCBI
mRatBN7.2	X	134,555,816 - 134,614,930 (+)	NCBI
Rnor_6.0	X	159,112,880 - 159,172,528 (+)	NCBI
Rnor_5.0	X	153,743,208 - 153,803,160 (+)	NCBI
Celera	X	142,605,050 - 142,663,917 (+)	NCBI

Sequence:

show sequence

GTTGGGGGCTGCGGAACCTGGGGCTCCAAGGTCCCTTAGGGCAACTGGTAGCTGTTCTTAGCTG
TGCCCAGCCCTCCCGGAACACACCCTGTGTGAGGTCCCTCCAGCTATAAGGTGGGCACCATGTC
TGAGAAGTTCGACTGTCACTACTGCAGGGACCCCTTGCAGGGGAAGAAGTATGTGCAGAAGGAT
GGCCGTCACTGCTGCCTGAAGTGCTTTGACAAGTTCTGCGCCAACACCTGCGTGGAATGCCGCA
AGCCCATAAGCGCTGATGCTAAGGAGGTGCACTATAAGAATCGCTACTGGCACGACACCTGCTT
CCGCTGTGCCAAGTGCCTTCACCCCTTGGCCAGTGAGACCTTTGTGTCCAAGGATGGCAAGATC
CTGTGCAACAAGTGCGCCACTCGGGAGGACTCCCCCAGGTGCAAAGGGTGCTTCAAGGCCATTG
TGGCAGGAGACCAGAATGTGGAGTACAAGGGCACCATCTGGCATAAAGACTGCTTCACCTGCAG
CAACTGCAAGCAAGTCATTGGGACCGGAAGCTTCTTCCCGAAAGGGGAGGACTTCTACTGTGTG
ACTTGCCATGAGACCAAGTTTGCCAAGCATTGCGTGAAATGCAACAAGGCCATCACATCTGGAG
GAATCACTTACCAGGATCAGCCCTGGCATGCCGAGTGCTTTGTGTGTGTTACCTGCTCTAAGAA
GCTGGCGGGGCAGCGTTTCACCGCTGTGGAGGACCAGTATTACTGCGTGGATTGCTACAAGAAC
TTTGTGGCCAAGAAGTGTGCTGGATGCAAGAACCCCATCACTGGGTTTGGTAAAGGCTCCAGTG
TGGTGGCCTATGAAGGACAATCCTGGCACGACTACTGCTTCCACTGCAAAAAATGCTCCGTGAA
TCTGGCCAACAAGCGCTTTGTCTTTCATAATGAGCAGGTGTATTGTCCTGACTGTGCCAAAAAG
CTGTAACTTGACAGGGGCTCCTGTCCTGTAAAATGGCATTTGAAGCATACTTTGTGTCCTTTGC
TCACTCTCTCTGCACCATCCATAGGGCAAGAGTGGGCTTTCACCTCTTTCAAATTGCTCTTTCT
GTCTTTGCTCTCATTTTACAGTATTAATCAACCGAGGACACACAGTGATCATATTAGAATTTAG
AAAAGAGCAACCTCGCAGCAAAAATAATTTCTCTGTTGCTGCAATGGCAAAACAAAAACGTAGA
CTGACTCTTCTGCATGTTTCCCATAGAGCAGAAAAGTGCTAACCATGTAGCCACTTCATGATGC
AAGCAAAAAGCATAGGCGACAAAGTTCCCACTGAGATGCCTTTGGGGCTCAGTCGGGACGCACT
GTGCGGTCACGTGACTGCTGTGCAGGAGTTGCAGCGGCTGCTCCAACTCCCTCCTCGCCTTTTT
AAGAACTTGCCAGAATGCATGGTTTAACTTCCTTATCAAAACTCTGACCTCCCTTCTGTTCTTT
TGTGCTTTCACACGACTAACACAGATTTCCAGAGAACTAACATTTTGAACTTTGCTGTAATTCT
CAAGTGACTTTCCCCCCCTACTAATGTTTGACTCCCCTATGTGGCGTGTTCTCTGAGCGTTCCT
ACTTTAAACCATGGAACACAGGTGATTTGGAGCACCTAAGCAGATCTGAGCAAACAAGCCTGTT
TCAGAACAAACTCGCCACGGTGACTACTTCTGGAAGCTTAACAAGACTAACTCTCCTGTCCTTT
TTCATTTTTTTTAAAAATTTTGTTTTAATGAGTAGTAAAATAGTTTATGGAGTTGGAAACTTGC
ATGACAATATATGAGCCTCCTCAAACGTTCCTGCAGTTTTGCGATTGATCCTGTAGAAGTGACA
AAAGCTCTAGAGTGGCAGCTGAGCAGGCACAGGGCTGTCATCAACAAGAATACGTTTCAAAGTA
GTGACAAGGTGAAGTCCTTGTAGCATAACCATTGTCTGCTCTTTGTCTGCGTTCAGGAAGAGTG
CAGAGTCCCTTTCCTTGTGATTCCTAGAGAACTTTCCCTGCAGAGTTGAGTTAGATCTCTGGGG
CTGTCAGGGTAGCCCTCACCCTTTACAGGCAGGGCTGGGTTTCCTCCTCCTCTGAAATGCAGGA
TTGCCTCCCTGATCGTACTCTCCATTATACCACATGTATAACGAGCCAATATCAAAGTAAAGAT
GTAATGAAAATACACTCATATATTACTGTAGGAGTGCTTCTAGATGCCCACACCTCATTTCCAT
ATTTGTCATTAGCTGTTTCCATCGAATGTTTCAATGTATCCTTACAAAAATAAAGCAGCATAGA
AAGAACAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001271200 ⟹ NP_001258129

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	139,645,472 - 139,652,290 (+)	NCBI
mRatBN7.2	X	134,608,112 - 134,614,930 (+)	NCBI
Rnor_6.0	X	159,165,169 - 159,172,528 (+)	NCBI
Rnor_5.0	X	153,743,208 - 153,803,160 (+)	NCBI
Celera	X	142,657,325 - 142,663,917 (+)	NCBI

Sequence:

show sequence

CAGGAGTTTGGGGCCATTCAGTTGGTGGAAGAGCTGCGGTCCCTCCAGCTATAAGGTGGGCACC
ATGTCTGAGAAGTTCGACTGTCACTACTGCAGGGACCCCTTGCAGGGGAAGAAGTATGTGCAGA
AGGATGGCCGTCACTGCTGCCTGAAGTGCTTTGACAAGTTCTGCGCCAACACCTGCGTGGAATG
CCGCAAGCCCATAAGCGCTGATGCTAAGGAGGTGCACTATAAGAATCGCTACTGGCACGACACC
TGCTTCCGCTGTGCCAAGTGCCTTCACCCCTTGGCCAGTGAGACCTTTGTGTCCAAGGATGGCA
AGATCCTGTGCAACAAGTGCGCCACTCGGGAGGACTCCCCCAGGTGCAAAGGGTGCTTCAAGGC
CATTGTGGCAGGAGACCAGAATGTGGAGTACAAGGGCACCATCTGGCATAAAGACTGCTTCACC
TGCAGCAACTGCAAGCAAGTCATTGGGACCGGAAGCTTCTTCCCGAAAGGGGAGGACTTCTACT
GTGTGACTTGCCATGAGACCAAGTTTGCCAAGCATTGCGTGAAATGCAACAAGGCCATCACATC
TGGAGGAATCACTTACCAGGATCAGCCCTGGCATGCCGAGTGCTTTGTGTGTGTTACCTGCTCT
AAGAAGCTGGCGGGGCAGCGTTTCACCGCTGTGGAGGACCAGTATTACTGCGTGGATTGCTACA
AGAACTTTGTGGCCAAGAAGTGTGCTGGATGCAAGAACCCCATCACTGGGTTTGGTAAAGGCTC
CAGTGTGGTGGCCTATGAAGGACAATCCTGGCACGACTACTGCTTCCACTGCAAAAAATGCTCC
GTGAATCTGGCCAACAAGCGCTTTGTCTTTCATAATGAGCAGGTGTATTGTCCTGACTGTGCCA
AAAAGCTGTAACTTGACAGGGGCTCCTGTCCTGTAAAATGGCATTTGAAGCATACTTTGTGTCC
TTTGCTCACTCTCTCTGCACCATCCATAGGGCAAGAGTGGGCTTTCACCTCTTTCAAATTGCTC
TTTCTGTCTTTGCTCTCATTTTACAGTATTAATCAACCGAGGACACACAGTGATCATATTAGAA
TTTAGAAAAGAGCAACCTCGCAGCAAAAATAATTTCTCTGTTGCTGCAATGGCAAAACAAAAAC
GTAGACTGACTCTTCTGCATGTTTCCCATAGAGCAGAAAAGTGCTAACCATGTAGCCACTTCAT
GATGCAAGCAAAAAGCATAGGCGACAAAGTTCCCACTGAGATGCCTTTGGGGCTCAGTCGGGAC
GCACTGTGCGGTCACGTGACTGCTGTGCAGGAGTTGCAGCGGCTGCTCCAACTCCCTCCTCGCC
TTTTTAAGAACTTGCCAGAATGCATGGTTTAACTTCCTTATCAAAACTCTGACCTCCCTTCTGT
TCTTTTGTGCTTTCACACGACTAACACAGATTTCCAGAGAACTAACATTTTGAACTTTGCTGTA
ATTCTCAAGTGACTTTCCCCCCCTACTAATGTTTGACTCCCCTATGTGGCGTGTTCTCTGAGCG
TTCCTACTTTAAACCATGGAACACAGGTGATTTGGAGCACCTAAGCAGATCTGAGCAAACAAGC
CTGTTTCAGAACAAACTCGCCACGGTGACTACTTCTGGAAGCTTAACAAGACTAACTCTCCTGT
CCTTTTTCATTTTTTTTAAAAATTTTGTTTTAATGAGTAGTAAAATAGTTTATGGAGTTGGAAA
CTTGCATGACAATATATGAGCCTCCTCAAACGTTCCTGCAGTTTTGCGATTGATCCTGTAGAAG
TGACAAAAGCTCTAGAGTGGCAGCTGAGCAGGCACAGGGCTGTCATCAACAAGAATACGTTTCA
AAGTAGTGACAAGGTGAAGTCCTTGTAGCATAACCATTGTCTGCTCTTTGTCTGCGTTCAGGAA
GAGTGCAGAGTCCCTTTCCTTGTGATTCCTAGAGAACTTTCCCTGCAGAGTTGAGTTAGATCTC
TGGGGCTGTCAGGGTAGCCCTCACCCTTTACAGGCAGGGCTGGGTTTCCTCCTCCTCTGAAATG
CAGGATTGCCTCCCTGATCGTACTCTCCATTATACCACATGTATAACGAGCCAATATCAAAGTA
AAGATGTAATGAAAATACACTCATATATTACTGTAGGAGTGCTTCTAGATGCCCACACCTCATT
TCCATATTTGTCATTAGCTGTTTCCATCGAATGTTTCAATGTATCCTTACAAAAATAAAGCAGC
ATAGAAAGAACAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001271201 ⟹ NP_001258130

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	139,645,472 - 139,652,290 (+)	NCBI
mRatBN7.2	X	134,608,112 - 134,614,930 (+)	NCBI
Rnor_6.0	X	159,165,169 - 159,172,528 (+)	NCBI
Rnor_5.0	X	153,743,208 - 153,803,160 (+)	NCBI
Celera	X	142,657,325 - 142,663,917 (+)	NCBI

Sequence:

show sequence

CAGGAGTTTGGGGCCATTCAGTTGGTGGAAGAGCTGCGGTCCCTCCAGCTATAAGGTGGGCACC
ATGTCTGAGAAGTTCGACTGTCACTACTGCAGGGACCCCTTGCAGGGGAAGAAGTATGTGCAGA
AGGATGGCCGTCACTGCTGCCTGAAGTGCTTTGACAAGTTCTGCGCCAACACCTGCGTGGAATG
CCGCAAGCCCATAAGCGCTGATGCTAAGGAGGTGCACTATAAGAATCGCTACTGGCACGACACC
TGCTTCCGCTGTGCCAAGTGCCTTCACCCCTTGGCCAGTGAGACCTTTGTGTCCAAGGATGGCA
AGATCCTGTGCAACAAGTGCGCCACTCGGGAGGACTCCCCCAGGTGCAAAGGGTGCTTCAAGGC
CATTGTGGCAGGAGACCAGAATGTGGAGTACAAGGGCACCATCTGGCATAAAGACTGCTTCACC
TGCAGCAACTGCAAGCAAGTCATTGGGACCGGAAGCTTCTTCCCGAAAGGGGAGGACTTCTACT
GTGTGACTTGCCATGAGACCAAGTTTGCCAAGCATTGCGTGAAATGCAACAAGGGTTTGGTAAA
GGCTCCAGTGTGGTGGCCTATGAAGGACAATCCTGGCACGACTACTGCTTCCACTGCAAAAAAT
GCTCCGTGAATCTGGCCAACAAGCGCTTTGTCTTTCATAATGAGCAGGTGTATTGTCCTGACTG
TGCCAAAAAGCTGTAACTTGACAGGGGCTCCTGTCCTGTAAAATGGCATTTGAAGCATACTTTG
TGTCCTTTGCTCACTCTCTCTGCACCATCCATAGGGCAAGAGTGGGCTTTCACCTCTTTCAAAT
TGCTCTTTCTGTCTTTGCTCTCATTTTACAGTATTAATCAACCGAGGACACACAGTGATCATAT
TAGAATTTAGAAAAGAGCAACCTCGCAGCAAAAATAATTTCTCTGTTGCTGCAATGGCAAAACA
AAAACGTAGACTGACTCTTCTGCATGTTTCCCATAGAGCAGAAAAGTGCTAACCATGTAGCCAC
TTCATGATGCAAGCAAAAAGCATAGGCGACAAAGTTCCCACTGAGATGCCTTTGGGGCTCAGTC
GGGACGCACTGTGCGGTCACGTGACTGCTGTGCAGGAGTTGCAGCGGCTGCTCCAACTCCCTCC
TCGCCTTTTTAAGAACTTGCCAGAATGCATGGTTTAACTTCCTTATCAAAACTCTGACCTCCCT
TCTGTTCTTTTGTGCTTTCACACGACTAACACAGATTTCCAGAGAACTAACATTTTGAACTTTG
CTGTAATTCTCAAGTGACTTTCCCCCCCTACTAATGTTTGACTCCCCTATGTGGCGTGTTCTCT
GAGCGTTCCTACTTTAAACCATGGAACACAGGTGATTTGGAGCACCTAAGCAGATCTGAGCAAA
CAAGCCTGTTTCAGAACAAACTCGCCACGGTGACTACTTCTGGAAGCTTAACAAGACTAACTCT
CCTGTCCTTTTTCATTTTTTTTAAAAATTTTGTTTTAATGAGTAGTAAAATAGTTTATGGAGTT
GGAAACTTGCATGACAATATATGAGCCTCCTCAAACGTTCCTGCAGTTTTGCGATTGATCCTGT
AGAAGTGACAAAAGCTCTAGAGTGGCAGCTGAGCAGGCACAGGGCTGTCATCAACAAGAATACG
TTTCAAAGTAGTGACAAGGTGAAGTCCTTGTAGCATAACCATTGTCTGCTCTTTGTCTGCGTTC
AGGAAGAGTGCAGAGTCCCTTTCCTTGTGATTCCTAGAGAACTTTCCCTGCAGAGTTGAGTTAG
ATCTCTGGGGCTGTCAGGGTAGCCCTCACCCTTTACAGGCAGGGCTGGGTTTCCTCCTCCTCTG
AAATGCAGGATTGCCTCCCTGATCGTACTCTCCATTATACCACATGTATAACGAGCCAATATCA
AAGTAAAGATGTAATGAAAATACACTCATATATTACTGTAGGAGTGCTTCTAGATGCCCACACC
TCATTTCCATATTTGTCATTAGCTGTTTCCATCGAATGTTTCAATGTATCCTTACAAAAATAAA
GCAGCATAGAAAGAACAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_145669 ⟹ NP_663702

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	139,638,496 - 139,652,290 (+)	NCBI
mRatBN7.2	X	134,601,136 - 134,614,930 (+)	NCBI
Rnor_6.0	X	159,158,194 - 159,172,528 (+)	NCBI
Rnor_5.0	X	153,743,208 - 153,803,160 (+)	NCBI
RGSC_v3.4	X	141,315,765 - 141,329,278 (+)	RGD
Celera	X	142,650,349 - 142,663,917 (+)	NCBI

Sequence:

show sequence

ATGTATGTTCACAAATGAGCCTCATCATCTGGGCTTGAGAGAAGACGGGTGTAGGTGCCGCTCC
TGAACTTGGCCTCTGAGCCATGGCTTCTCAAAGACACTCAGGTCCCTCCAGCTATAAGGTGGGC
ACCATGTCTGAGAAGTTCGACTGTCACTACTGCAGGGACCCCTTGCAGGGGAAGAAGTATGTGC
AGAAGGATGGCCGTCACTGCTGCCTGAAGTGCTTTGACAAGTTCTGCGCCAACACCTGCGTGGA
ATGCCGCAAGCCCATAAGCGCTGATGCTAAGGAGGTGCACTATAAGAATCGCTACTGGCACGAC
ACCTGCTTCCGCTGTGCCAAGTGCCTTCACCCCTTGGCCAGTGAGACCTTTGTGTCCAAGGATG
GCAAGATCCTGTGCAACAAGTGCGCCACTCGGGAGGACTCCCCCAGGTGCAAAGGGTGCTTCAA
GGCCATTGTGGCAGGAGACCAGAATGTGGAGTACAAGGGCACCATCTGGCATAAAGACTGCTTC
ACCTGCAGCAACTGCAAGCAAGTCATTGGGACCGGAAGCTTCTTCCCGAAAGGGGAGGACTTCT
ACTGTGTGACTTGCCATGAGACCAAGTTTGCCAAGCATTGCGTGAAATGCAACAAGGGTTTGGT
AAAGGCTCCAGTGTGGTGGCCTATGAAGGACAATCCTGGCACGACTACTGCTTCCACTGCAAAA
AATGCTCCGTGAATCTGGCCAACAAGCGCTTTGTCTTTCATAATGAGCAGGTGTATTGTCCTGA
CTGTGCCAAAAAGCTGTAACTTGACAGGGGCTCCTGTCCTGTAAAATGGCATTTGAAGCATACT
TTGTGTCCTTTGCTCACTCTCTCTGCACCATCCATAGGGCAAGAGTGGGCTTTCACCTCTTTCA
AATTGCTCTTTCTGTCTTTGCTCTCATTTTACAGTATTAATCAACCGAGGACACACAGTGATCA
TATTAGAATTTAGAAAAGAGCAACCTCGCAGCAAAAATAATTTCTCTGTTGCTGCAATGGCAAA
ACAAAAACGTAGACTGACTCTTCTGCATGTTTCCCATAGAGCAGAAAAGTGCTAACCATGTAGC
CACTTCATGATGCAAGCAAAAAGCATAGGCGACAAAGTTCCCACTGAGATGCCTTTGGGGCTCA
GTCGGGACGCACTGTGCGGTCACGTGACTGCTGTGCAGGAGTTGCAGCGGCTGCTCCAACTCCC
TCCTCGCCTTTTTAAGAACTTGCCAGAATGCATGGTTTAACTTCCTTATCAAAACTCTGACCTC
CCTTCTGTTCTTTTGTGCTTTCACACGACTAACACAGATTTCCAGAGAACTAACATTTTGAACT
TTGCTGTAATTCTCAAGTGACTTTCCCCCCCTACTAATGTTTGACTCCCCTATGTGGCGTGTTC
TCTGAGCGTTCCTACTTTAAACCATGGAACACAGGTGATTTGGAGCACCTAAGCAGATCTGAGC
AAACAAGCCTGTTTCAGAACAAACTCGCCACGGTGACTACTTCTGGAAGCTTAACAAGACTAAC
TCTCCTGTCCTTTTTCATTTTTTTTAAAAATTTTGTTTTAATGAGTAGTAAAATAGTTTATGGA
GTTGGAAACTTGCATGACAATATATGAGCCTCCTCAAACGTTCCTGCAGTTTTGCGATTGATCC
TGTAGAAGTGACAAAAGCTCTAGAGTGGCAGCTGAGCAGGCACAGGGCTGTCATCAACAAGAAT
ACGTTTCAAAGTAGTGACAAGGTGAAGTCCTTGTAGCATAACCATTGTCTGCTCTTTGTCTGCG
TTCAGGAAGAGTGCAGAGTCCCTTTCCTTGTGATTCCTAGAGAACTTTCCCTGCAGAGTTGAGT
TAGATCTCTGGGGCTGTCAGGGTAGCCCTCACCCTTTACAGGCAGGGCTGGGTTTCCTCCTCCT
CTGAAATGCAGGATTGCCTCCCTGATCGTACTCTCCATTATACCACATGTATAACGAGCCAATA
TCAAAGTAAAGATGTAATGAAAATACACTCATATATTACTGTAGGAGTGCTTCTAGATGCCCAC
ACCTCATTTCCATATTTGTCATTAGCTGTTTCCATCGAATGTTTCAATGTATCCTTACAAAAAT
AAAGCAGCATAGAAAGAACAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006257671 ⟹ XP_006257733

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	139,638,375 - 139,652,288 (+)	NCBI
mRatBN7.2	X	134,601,085 - 134,614,928 (+)	NCBI
Rnor_6.0	X	159,157,945 - 159,172,526 (+)	NCBI
Rnor_5.0	X	153,743,208 - 153,803,160 (+)	NCBI

Sequence:

show sequence

GCTGAGTCCAATTTTATCCCGGTCCAGGGATGACTTTCTATGTGGCCTTTCTGGCTCGGAAGCA
AATTTGGATGCTGAGTAGCCTCGCAGGTATTTATATGTAGCGTTTGGTATTTTTACTGGGTCCT
ATTCTTCTCCCTTGGATCACCTAAAATGGTTAAGAATTTTCTAGTGGGATTAAGGTTGTGATCT
CAGGGGAGGGTGGGACATCTGCTCTTGGTTATTTTTGTGTGAGCTGCTTCCCCTTAAATGTATG
TTCACAAATGAGCCTCATCATCTGGGCTTGAGAGAAGACGGGTGTAGGTGCCGCTCCTGAACTT
GGCCTCTGAGCCATGGCTTCTCAAAGACACTCAGGTCCCTCCAGCTATAAGGTGGGCACCATGT
CTGAGAAGTTCGACTGTCACTACTGCAGGGACCCCTTGCAGGGGAAGAAGTATGTGCAGAAGGA
TGGCCGTCACTGCTGCCTGAAGTGCTTTGACAAGTTCTGCGCCAACACCTGCGTGGAATGCCGC
AAGCCCATAAGCGCTGATGCTAAGGAGGTGCACTATAAGAATCGCTACTGGCACGACACCTGCT
TCCGCTGTGCCAAGTGCCTTCACCCCTTGGCCAGTGAGACCTTTGTGTCCAAGGATGGCAAGAT
CCTGTGCAACAAGTGCGCCACTCGGGAGGACTCCCCCAGGTGCAAAGGGTGCTTCAAGGCCATT
GTGGCAGGAGACCAGAATGTGGAGTACAAGGGCACCATCTGGCATAAAGACTGCTTCACCTGCA
GCAACTGCAAGCAAGTCATTGGGACCGGAAGCTTCTTCCCGAAAGGGGAGGACTTCTACTGTGT
GACTTGCCATGAGACCAAGTTTGCCAAGCATTGCGTGAAATGCAACAAGGCCATCACATCTGGA
GGAATCACTTACCAGGATCAGCCCTGGCATGCCGAGTGCTTTGTGTGTGTTACCTGCTCTAAGA
AGCTGGCGGGGCAGCGTTTCACCGCTGTGGAGGACCAGTATTACTGCGTGGATTGCTACAAGAA
CTTTGTGGCCAAGAAGTGTGCTGGATGCAAGAACCCCATCACTGGGAAAAGGACTGTGTCAAGA
GTGAGCCACCCAGTCTCTAAAGCTAGGAAGTCCCCAGTGTGCCACGGGAAACGCTTGCCTCTCA
CCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATCCGGGTGGAGAGAGGACTTGTCCCTCGTG
GGTGGTGGTTCTTTATAGAAAAAATCGAAGCTTAGCAGCTCCTCGAGGCCCGGGTTTGGTAAAG
GCTCCAGTGTGGTGGCCTATGAAGGACAATCCTGGCACGACTACTGCTTCCACTGCAAAAAATG
CTCCGTGAATCTGGCCAACAAGCGCTTTGTCTTTCATAATGAGCAGGTGTATTGTCCTGACTGT
GCCAAAAAGCTGTAACTTGACAGGGGCTCCTGTCCTGTAAAATGGCATTTGAAGCATACTTTGT
GTCCTTTGCTCACTCTCTCTGCACCATCCATAGGGCAAGAGTGGGCTTTCACCTCTTTCAAATT
GCTCTTTCTGTCTTTGCTCTCATTTTACAGTATTAATCAACCGAGGACACACAGTGATCATATT
AGAATTTAGAAAAGAGCAACCTCGCAGCAAAAATAATTTCTCTGTTGCTGCAATGGCAAAACAA
AAACGTAGACTGACTCTTCTGCATGTTTCCCATAGAGCAGAAAAGTGCTAACCATGTAGCCACT
TCATGATGCAAGCAAAAAGCATAGGCGACAAAGTTCCCACTGAGATGCCTTTGGGGCTCAGTCG
GGACGCACTGTGCGGTCACGTGACTGCTGTGCAGGAGTTGCAGCGGCTGCTCCAACTCCCTCCT
CGCCTTTTTAAGAACTTGCCAGAATGCATGGTTTAACTTCCTTATCAAAACTCTGACCTCCCTT
CTGTTCTTTTGTGCTTTCACACGACTAACACAGATTTCCAGAGAACTAACATTTTGAACTTTGC
TGTAATTCTCAAGTGACTTTCCCCCCCTACTAATGTTTGACTCCCCTATGTGGCGTGTTCTCTG
AGCGTTCCTACTTTAAACCATGGAACACAGGTGATTTGGAGCACCTAAGCAGATCTGAGCAAAC
AAGCCTGTTTCAGAACAAACTCGCCACGGTGACTACTTCTGGAAGCTTAACAAGACTAACTCTC
CTGTCCTTTTTCATTTTTTTTAAAAATTTTGTTTTAATGAGTAGTAAAATAGTTTATGGAGTTG
GAAACTTGCATGACAATATATGAGCCTCCTCAAACGTTCCTGCAGTTTTGCGATTGATCCTGTA
GAAGTGACAAAAGCTCTAGAGTGGCAGCTGAGCAGGCACAGGGCTGTCATCAACAAGAATACGT
TTCAAAGTAGTGACAAGGTGAAGTCCTTGTAGCATAACCATTGTCTGCTCTTTGTCTGCGTTCA
GGAAGAGTGCAGAGTCCCTTTCCTTGTGATTCCTAGAGAACTTTCCCTGCAGAGTTGAGTTAGA
TCTCTGGGGCTGTCAGGGTAGCCCTCACCCTTTACAGGCAGGGCTGGGTTTCCTCCTCCTCTGA
AATGCAGGATTGCCTCCCTGATCGTACTCTCCATTATACCACATGTATAACGAGCCAATATCAA
AGTAAAGATGTAATGAAAATACACTCATATATTACTGTAGGAGTGCTTCTAGATGCCCACACCT
CATTTCCATATTTGTCATTAGCTGTTTCCATCGAATGTTTCAATGTATCCTTACAAAAATAAAG
CAGCATAGAAAGAA

hide sequence

RefSeq Acc Id:

XM_006257672 ⟹ XP_006257734

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	139,592,794 - 139,652,288 (+)	NCBI
mRatBN7.2	X	134,555,399 - 134,614,928 (+)	NCBI
Rnor_6.0	X	159,112,516 - 159,172,526 (+)	NCBI
Rnor_5.0	X	153,743,208 - 153,803,160 (+)	NCBI

Sequence:

show sequence

TCAACCGCCCGGCCGAGGGGGCTCAGTCCGCTGCCGCCGCTGTCCCTGCCGCGCTTTGCTCTCT
GAGCTGGCAGCGGCCGCCGGTGCCGCCTAGACAGCTGCGCGGGCAACTGGTAGCTGTTCTTAGC
TGTGCCCAGCCCTCCCGGAACACACCCTGTGTGAGGTCCCTCCAGCTATAAGGTGGGCACCATG
TCTGAGAAGTTCGACTGTCACTACTGCAGGGACCCCTTGCAGGGGAAGAAGTATGTGCAGAAGG
ATGGCCGTCACTGCTGCCTGAAGTGCTTTGACAAGTTCTGCGCCAACACCTGCGTGGAATGCCG
CAAGCCCATAAGCGCTGATGCTAAGGAGGTGCACTATAAGAATCGCTACTGGCACGACACCTGC
TTCCGCTGTGCCAAGTGCCTTCACCCCTTGGCCAGTGAGACCTTTGTGTCCAAGGATGGCAAGA
TCCTGTGCAACAAGTGCGCCACTCGGGAGGACTCCCCCAGGTGCAAAGGGTGCTTCAAGGCCAT
TGTGGCAGGAGACCAGAATGTGGAGTACAAGGGCACCATCTGGCATAAAGACTGCTTCACCTGC
AGCAACTGCAAGCAAGTCATTGGGACCGGAAGCTTCTTCCCGAAAGGGGAGGACTTCTACTGTG
TGACTTGCCATGAGACCAAGTTTGCCAAGCATTGCGTGAAATGCAACAAGGCCATCACATCTGG
AGGAATCACTTACCAGGATCAGCCCTGGCATGCCGAGTGCTTTGTGTGTGTTACCTGCTCTAAG
AAGCTGGCGGGGCAGCGTTTCACCGCTGTGGAGGACCAGTATTACTGCGTGGATTGCTACAAGA
ACTTTGTGGCCAAGAAGTGTGCTGGATGCAAGAACCCCATCACTGGGAAAAGGACTGTGTCAAG
AGTGAGCCACCCAGTCTCTAAAGCTAGGAAGTCCCCAGTGTGCCACGGGAAACGCTTGCCTCTC
ACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATCCGGGTGGAGAGAGGACTTGTCCCTCGT
GGGTGGTGGTTCTTTATAGAAAAAATCGAAGCTTAGCAGCTCCTCGAGGCCCGGGTTTGGTAAA
GGCTCCAGTGTGGTGGCCTATGAAGGACAATCCTGGCACGACTACTGCTTCCACTGCAAAAAAT
GCTCCGTGAATCTGGCCAACAAGCGCTTTGTCTTTCATAATGAGCAGGTGTATTGTCCTGACTG
TGCCAAAAAGCTGTAACTTGACAGGGGCTCCTGTCCTGTAAAATGGCATTTGAAGCATACTTTG
TGTCCTTTGCTCACTCTCTCTGCACCATCCATAGGGCAAGAGTGGGCTTTCACCTCTTTCAAAT
TGCTCTTTCTGTCTTTGCTCTCATTTTACAGTATTAATCAACCGAGGACACACAGTGATCATAT
TAGAATTTAGAAAAGAGCAACCTCGCAGCAAAAATAATTTCTCTGTTGCTGCAATGGCAAAACA
AAAACGTAGACTGACTCTTCTGCATGTTTCCCATAGAGCAGAAAAGTGCTAACCATGTAGCCAC
TTCATGATGCAAGCAAAAAGCATAGGCGACAAAGTTCCCACTGAGATGCCTTTGGGGCTCAGTC
GGGACGCACTGTGCGGTCACGTGACTGCTGTGCAGGAGTTGCAGCGGCTGCTCCAACTCCCTCC
TCGCCTTTTTAAGAACTTGCCAGAATGCATGGTTTAACTTCCTTATCAAAACTCTGACCTCCCT
TCTGTTCTTTTGTGCTTTCACACGACTAACACAGATTTCCAGAGAACTAACATTTTGAACTTTG
CTGTAATTCTCAAGTGACTTTCCCCCCCTACTAATGTTTGACTCCCCTATGTGGCGTGTTCTCT
GAGCGTTCCTACTTTAAACCATGGAACACAGGTGATTTGGAGCACCTAAGCAGATCTGAGCAAA
CAAGCCTGTTTCAGAACAAACTCGCCACGGTGACTACTTCTGGAAGCTTAACAAGACTAACTCT
CCTGTCCTTTTTCATTTTTTTTAAAAATTTTGTTTTAATGAGTAGTAAAATAGTTTATGGAGTT
GGAAACTTGCATGACAATATATGAGCCTCCTCAAACGTTCCTGCAGTTTTGCGATTGATCCTGT
AGAAGTGACAAAAGCTCTAGAGTGGCAGCTGAGCAGGCACAGGGCTGTCATCAACAAGAATACG
TTTCAAAGTAGTGACAAGGTGAAGTCCTTGTAGCATAACCATTGTCTGCTCTTTGTCTGCGTTC
AGGAAGAGTGCAGAGTCCCTTTCCTTGTGATTCCTAGAGAACTTTCCCTGCAGAGTTGAGTTAG
ATCTCTGGGGCTGTCAGGGTAGCCCTCACCCTTTACAGGCAGGGCTGGGTTTCCTCCTCCTCTG
AAATGCAGGATTGCCTCCCTGATCGTACTCTCCATTATACCACATGTATAACGAGCCAATATCA
AAGTAAAGATGTAATGAAAATACACTCATATATTACTGTAGGAGTGCTTCTAGATGCCCACACC
TCATTTCCATATTTGTCATTAGCTGTTTCCATCGAATGTTTCAATGTATCCTTACAAAAATAAA
GCAGCATAGAAAGAA

hide sequence

RefSeq Acc Id:

XM_006257673 ⟹ XP_006257735

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	139,593,069 - 139,652,288 (+)	NCBI
mRatBN7.2	X	134,555,705 - 134,614,928 (+)	NCBI
Rnor_6.0	X	159,112,792 - 159,172,526 (+)	NCBI
Rnor_5.0	X	153,743,208 - 153,803,160 (+)	NCBI

Sequence:

show sequence

GCTCGTGCTCCGCGGCCGCCACTCCGGGGCAGCGCCGACCTGCAGGGCTTGGGTACCTGCGGCC
TCCGGCCTCCGCTGCCTCGCCCACGTTGGGGGCTGCGGAACCTGGGGCTCCAAGGTCCCTTAGG
GCAACTGGTAGCTGTTCTTAGCTGTGCCCAGCCCTCCCGGAACACACCCTGTGTGAGGTCCCTC
CAGCTATAAGGTGGGCACCATGTCTGAGAAGTTCGACTGTCACTACTGCAGGGACCCCTTGCAG
GGGAAGAAGTATGTGCAGAAGGATGGCCGTCACTGCTGCCTGAAGTGCTTTGACAAGTTCTGCG
CCAACACCTGCGTGGAATGCCGCAAGCCCATAAGCGCTGATGCTAAGGAGGTGCACTATAAGAA
TCGCTACTGGCACGACACCTGCTTCCGCTGTGCCAAGTGCCTTCACCCCTTGGCCAGTGAGACC
TTTGTGTCCAAGGATGGCAAGATCCTGTGCAACAAGTGCGCCACTCGGGAGGACTCCCCCAGGT
GCAAAGGGTGCTTCAAGGCCATTGTGGCAGGAGACCAGAATGTGGAGTACAAGGGCACCATCTG
GCATAAAGACTGCTTCACCTGCAGCAACTGCAAGCAAGTCATTGGGACCGGAAGCTTCTTCCCG
AAAGGGGAGGACTTCTACTGTGTGACTTGCCATGAGACCAAGTTTGCCAAGCATTGCGTGAAAT
GCAACAAGGCCATCACATCTGGAGGAATCACTTACCAGGATCAGCCCTGGCATGCCGAGTGCTT
TGTGTGTGTTACCTGCTCTAAGAAGCTGGCGGGGCAGCGTTTCACCGCTGTGGAGGACCAGTAT
TACTGCGTGGATTGCTACAAGAACTTTGTGGCCAAGAAGTGTGCTGGATGCAAGAACCCCATCA
CTGGGAAAAGGACTGTGTCAAGAGTGAGCCACCCAGTCTCTAAAGCTAGGAAGTCCCCAGTGTG
CCACGGGAAACGCTTGCCTCTCACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATCCGGGT
GGAGAGAGGACTTGTCCCTCGTGGGTGGTGGTTCTTTATAGAAAAAATCGAAGCTTAGCAGCTC
CTCGAGGCCCGGGTTTGGTAAAGGCTCCAGTGTGGTGGCCTATGAAGGACAATCCTGGCACGAC
TACTGCTTCCACTGCAAAAAATGCTCCGTGAATCTGGCCAACAAGCGCTTTGTCTTTCATAATG
AGCAGGTGTATTGTCCTGACTGTGCCAAAAAGCTGTAACTTGACAGGGGCTCCTGTCCTGTAAA
ATGGCATTTGAAGCATACTTTGTGTCCTTTGCTCACTCTCTCTGCACCATCCATAGGGCAAGAG
TGGGCTTTCACCTCTTTCAAATTGCTCTTTCTGTCTTTGCTCTCATTTTACAGTATTAATCAAC
CGAGGACACACAGTGATCATATTAGAATTTAGAAAAGAGCAACCTCGCAGCAAAAATAATTTCT
CTGTTGCTGCAATGGCAAAACAAAAACGTAGACTGACTCTTCTGCATGTTTCCCATAGAGCAGA
AAAGTGCTAACCATGTAGCCACTTCATGATGCAAGCAAAAAGCATAGGCGACAAAGTTCCCACT
GAGATGCCTTTGGGGCTCAGTCGGGACGCACTGTGCGGTCACGTGACTGCTGTGCAGGAGTTGC
AGCGGCTGCTCCAACTCCCTCCTCGCCTTTTTAAGAACTTGCCAGAATGCATGGTTTAACTTCC
TTATCAAAACTCTGACCTCCCTTCTGTTCTTTTGTGCTTTCACACGACTAACACAGATTTCCAG
AGAACTAACATTTTGAACTTTGCTGTAATTCTCAAGTGACTTTCCCCCCCTACTAATGTTTGAC
TCCCCTATGTGGCGTGTTCTCTGAGCGTTCCTACTTTAAACCATGGAACACAGGTGATTTGGAG
CACCTAAGCAGATCTGAGCAAACAAGCCTGTTTCAGAACAAACTCGCCACGGTGACTACTTCTG
GAAGCTTAACAAGACTAACTCTCCTGTCCTTTTTCATTTTTTTTAAAAATTTTGTTTTAATGAG
TAGTAAAATAGTTTATGGAGTTGGAAACTTGCATGACAATATATGAGCCTCCTCAAACGTTCCT
GCAGTTTTGCGATTGATCCTGTAGAAGTGACAAAAGCTCTAGAGTGGCAGCTGAGCAGGCACAG
GGCTGTCATCAACAAGAATACGTTTCAAAGTAGTGACAAGGTGAAGTCCTTGTAGCATAACCAT
TGTCTGCTCTTTGTCTGCGTTCAGGAAGAGTGCAGAGTCCCTTTCCTTGTGATTCCTAGAGAAC
TTTCCCTGCAGAGTTGAGTTAGATCTCTGGGGCTGTCAGGGTAGCCCTCACCCTTTACAGGCAG
GGCTGGGTTTCCTCCTCCTCTGAAATGCAGGATTGCCTCCCTGATCGTACTCTCCATTATACCA
CATGTATAACGAGCCAATATCAAAGTAAAGATGTAATGAAAATACACTCATATATTACTGTAGG
AGTGCTTCTAGATGCCCACACCTCATTTCCATATTTGTCATTAGCTGTTTCCATCGAATGTTTC
AATGTATCCTTACAAAAATAAAGCAGCATAGAAAGAA

hide sequence

RefSeq Acc Id:

XM_006257674 ⟹ XP_006257736

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	139,592,845 - 139,652,288 (+)	NCBI
mRatBN7.2	X	134,555,500 - 134,614,928 (+)	NCBI
Rnor_6.0	X	159,112,516 - 159,172,526 (+)	NCBI
Rnor_5.0	X	153,743,208 - 153,803,160 (+)	NCBI

Sequence:

show sequence

TCAACCGCCCGGCCGAGGGGGCTCAGTCCGCTGCCGCCGCTGTCCCTGCCGCGCTTTGCTCTCT
GAGCTGGCAGCGGCCGCCGGTGCCGCCTAGACAGCTGCGCGGGTGAGCATCCCCAGACAGCAAC
TGGTAGCTGTTCTTAGCTGTGCCCAGCCCTCCCGGAACACACCCTGTGTGAGGTCCCTCCAGCT
ATAAGGTGGGCACCATGTCTGAGAAGTTCGACTGTCACTACTGCAGGGACCCCTTGCAGGGGAA
GAAGTATGTGCAGAAGGATGGCCGTCACTGCTGCCTGAAGTGCTTTGACAAGTTCTGCGCCAAC
ACCTGCGTGGAATGCCGCAAGCCCATAAGCGCTGATGCTAAGGAGGTGCACTATAAGAATCGCT
ACTGGCACGACACCTGCTTCCGCTGTGCCAAGTGCCTTCACCCCTTGGCCAGTGAGACCTTTGT
GTCCAAGGATGGCAAGATCCTGTGCAACAAGTGCGCCACTCGGGAGGACTCCCCCAGGTGCAAA
GGGTGCTTCAAGGCCATTGTGGCAGGAGACCAGAATGTGGAGTACAAGGGCACCATCTGGCATA
AAGACTGCTTCACCTGCAGCAACTGCAAGCAAGTCATTGGGACCGGAAGCTTCTTCCCGAAAGG
GGAGGACTTCTACTGTGTGACTTGCCATGAGACCAAGTTTGCCAAGCATTGCGTGAAATGCAAC
AAGGCCATCACATCTGGAGGAATCACTTACCAGGATCAGCCCTGGCATGCCGAGTGCTTTGTGT
GTGTTACCTGCTCTAAGAAGCTGGCGGGGCAGCGTTTCACCGCTGTGGAGGACCAGTATTACTG
CGTGGATTGCTACAAGAACTTTGTGGCCAAGAAGTGTGCTGGATGCAAGAACCCCATCACTGGG
AAAAGGACTGTGTCAAGAGTGAGCCACCCAGTCTCTAAAGCTAGGAAGTCCCCAGTGTGCCACG
GGAAACGCTTGCCTCTCACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATCCGGGTGGAGA
GAGGACTTGTCCCTCGTGGGTGGTGGTTCTTTATAGAAAAAATCGAAGCTTAGCAGCTCCTCGA
GGCCCGGGTTTGGTAAAGGCTCCAGTGTGGTGGCCTATGAAGGACAATCCTGGCACGACTACTG
CTTCCACTGCAAAAAATGCTCCGTGAATCTGGCCAACAAGCGCTTTGTCTTTCATAATGAGCAG
GTGTATTGTCCTGACTGTGCCAAAAAGCTGTAACTTGACAGGGGCTCCTGTCCTGTAAAATGGC
ATTTGAAGCATACTTTGTGTCCTTTGCTCACTCTCTCTGCACCATCCATAGGGCAAGAGTGGGC
TTTCACCTCTTTCAAATTGCTCTTTCTGTCTTTGCTCTCATTTTACAGTATTAATCAACCGAGG
ACACACAGTGATCATATTAGAATTTAGAAAAGAGCAACCTCGCAGCAAAAATAATTTCTCTGTT
GCTGCAATGGCAAAACAAAAACGTAGACTGACTCTTCTGCATGTTTCCCATAGAGCAGAAAAGT
GCTAACCATGTAGCCACTTCATGATGCAAGCAAAAAGCATAGGCGACAAAGTTCCCACTGAGAT
GCCTTTGGGGCTCAGTCGGGACGCACTGTGCGGTCACGTGACTGCTGTGCAGGAGTTGCAGCGG
CTGCTCCAACTCCCTCCTCGCCTTTTTAAGAACTTGCCAGAATGCATGGTTTAACTTCCTTATC
AAAACTCTGACCTCCCTTCTGTTCTTTTGTGCTTTCACACGACTAACACAGATTTCCAGAGAAC
TAACATTTTGAACTTTGCTGTAATTCTCAAGTGACTTTCCCCCCCTACTAATGTTTGACTCCCC
TATGTGGCGTGTTCTCTGAGCGTTCCTACTTTAAACCATGGAACACAGGTGATTTGGAGCACCT
AAGCAGATCTGAGCAAACAAGCCTGTTTCAGAACAAACTCGCCACGGTGACTACTTCTGGAAGC
TTAACAAGACTAACTCTCCTGTCCTTTTTCATTTTTTTTAAAAATTTTGTTTTAATGAGTAGTA
AAATAGTTTATGGAGTTGGAAACTTGCATGACAATATATGAGCCTCCTCAAACGTTCCTGCAGT
TTTGCGATTGATCCTGTAGAAGTGACAAAAGCTCTAGAGTGGCAGCTGAGCAGGCACAGGGCTG
TCATCAACAAGAATACGTTTCAAAGTAGTGACAAGGTGAAGTCCTTGTAGCATAACCATTGTCT
GCTCTTTGTCTGCGTTCAGGAAGAGTGCAGAGTCCCTTTCCTTGTGATTCCTAGAGAACTTTCC
CTGCAGAGTTGAGTTAGATCTCTGGGGCTGTCAGGGTAGCCCTCACCCTTTACAGGCAGGGCTG
GGTTTCCTCCTCCTCTGAAATGCAGGATTGCCTCCCTGATCGTACTCTCCATTATACCACATGT
ATAACGAGCCAATATCAAAGTAAAGATGTAATGAAAATACACTCATATATTACTGTAGGAGTGC
TTCTAGATGCCCACACCTCATTTCCATATTTGTCATTAGCTGTTTCCATCGAATGTTTCAATGT
ATCCTTACAAAAATAAAGCAGCATAGAAAGAA

hide sequence

RefSeq Acc Id:

XM_006257675 ⟹ XP_006257737

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	139,645,380 - 139,652,288 (+)	NCBI
mRatBN7.2	X	134,608,022 - 134,614,928 (+)	NCBI
Rnor_6.0	X	159,165,080 - 159,172,526 (+)	NCBI
Rnor_5.0	X	153,743,208 - 153,803,160 (+)	NCBI

Sequence:

show sequence

TGCTATTTGGTTGCCCATGGCAGCAGAATCCAAACAACTTGGACATGTGGTTGCTTTTAAAAAA
AAAAACCTGGGAATAGAACCCAGAGCAGGAGTTTGGGGCCATTCAGTTGGTGGAAGAGCTGCGG
TCCCTCCAGCTATAAGGTGGGCACCATGTCTGAGAAGTTCGACTGTCACTACTGCAGGGACCCC
TTGCAGGGGAAGAAGTATGTGCAGAAGGATGGCCGTCACTGCTGCCTGAAGTGCTTTGACAAGT
TCTGCGCCAACACCTGCGTGGAATGCCGCAAGCCCATAAGCGCTGATGCTAAGGAGGTGCACTA
TAAGAATCGCTACTGGCACGACACCTGCTTCCGCTGTGCCAAGTGCCTTCACCCCTTGGCCAGT
GAGACCTTTGTGTCCAAGGATGGCAAGATCCTGTGCAACAAGTGCGCCACTCGGGAGGACTCCC
CCAGGTGCAAAGGGTGCTTCAAGGCCATTGTGGCAGGAGACCAGAATGTGGAGTACAAGGGCAC
CATCTGGCATAAAGACTGCTTCACCTGCAGCAACTGCAAGCAAGTCATTGGGACCGGAAGCTTC
TTCCCGAAAGGGGAGGACTTCTACTGTGTGACTTGCCATGAGACCAAGTTTGCCAAGCATTGCG
TGAAATGCAACAAGGCCATCACATCTGGAGGAATCACTTACCAGGATCAGCCCTGGCATGCCGA
GTGCTTTGTGTGTGTTACCTGCTCTAAGAAGCTGGCGGGGCAGCGTTTCACCGCTGTGGAGGAC
CAGTATTACTGCGTGGATTGCTACAAGAACTTTGTGGCCAAGAAGTGTGCTGGATGCAAGAACC
CCATCACTGGGAAAAGGACTGTGTCAAGAGTGAGCCACCCAGTCTCTAAAGCTAGGAAGTCCCC
AGTGTGCCACGGGAAACGCTTGCCTCTCACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCAT
CCGGGTGGAGAGAGGACTTGTCCCTCGTGGGTGGTGGTTCTTTATAGAAAAAATCGAAGCTTAG
CAGCTCCTCGAGGCCCGGGTTTGGTAAAGGCTCCAGTGTGGTGGCCTATGAAGGACAATCCTGG
CACGACTACTGCTTCCACTGCAAAAAATGCTCCGTGAATCTGGCCAACAAGCGCTTTGTCTTTC
ATAATGAGCAGGTGTATTGTCCTGACTGTGCCAAAAAGCTGTAACTTGACAGGGGCTCCTGTCC
TGTAAAATGGCATTTGAAGCATACTTTGTGTCCTTTGCTCACTCTCTCTGCACCATCCATAGGG
CAAGAGTGGGCTTTCACCTCTTTCAAATTGCTCTTTCTGTCTTTGCTCTCATTTTACAGTATTA
ATCAACCGAGGACACACAGTGATCATATTAGAATTTAGAAAAGAGCAACCTCGCAGCAAAAATA
ATTTCTCTGTTGCTGCAATGGCAAAACAAAAACGTAGACTGACTCTTCTGCATGTTTCCCATAG
AGCAGAAAAGTGCTAACCATGTAGCCACTTCATGATGCAAGCAAAAAGCATAGGCGACAAAGTT
CCCACTGAGATGCCTTTGGGGCTCAGTCGGGACGCACTGTGCGGTCACGTGACTGCTGTGCAGG
AGTTGCAGCGGCTGCTCCAACTCCCTCCTCGCCTTTTTAAGAACTTGCCAGAATGCATGGTTTA
ACTTCCTTATCAAAACTCTGACCTCCCTTCTGTTCTTTTGTGCTTTCACACGACTAACACAGAT
TTCCAGAGAACTAACATTTTGAACTTTGCTGTAATTCTCAAGTGACTTTCCCCCCCTACTAATG
TTTGACTCCCCTATGTGGCGTGTTCTCTGAGCGTTCCTACTTTAAACCATGGAACACAGGTGAT
TTGGAGCACCTAAGCAGATCTGAGCAAACAAGCCTGTTTCAGAACAAACTCGCCACGGTGACTA
CTTCTGGAAGCTTAACAAGACTAACTCTCCTGTCCTTTTTCATTTTTTTTAAAAATTTTGTTTT
AATGAGTAGTAAAATAGTTTATGGAGTTGGAAACTTGCATGACAATATATGAGCCTCCTCAAAC
GTTCCTGCAGTTTTGCGATTGATCCTGTAGAAGTGACAAAAGCTCTAGAGTGGCAGCTGAGCAG
GCACAGGGCTGTCATCAACAAGAATACGTTTCAAAGTAGTGACAAGGTGAAGTCCTTGTAGCAT
AACCATTGTCTGCTCTTTGTCTGCGTTCAGGAAGAGTGCAGAGTCCCTTTCCTTGTGATTCCTA
GAGAACTTTCCCTGCAGAGTTGAGTTAGATCTCTGGGGCTGTCAGGGTAGCCCTCACCCTTTAC
AGGCAGGGCTGGGTTTCCTCCTCCTCTGAAATGCAGGATTGCCTCCCTGATCGTACTCTCCATT
ATACCACATGTATAACGAGCCAATATCAAAGTAAAGATGTAATGAAAATACACTCATATATTAC
TGTAGGAGTGCTTCTAGATGCCCACACCTCATTTCCATATTTGTCATTAGCTGTTTCCATCGAA
TGTTTCAATGTATCCTTACAAAAATAAAGCAGCATAGAAAGAA

hide sequence

RefSeq Acc Id:

XM_006257676 ⟹ XP_006257738

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	139,592,795 - 139,652,288 (+)	NCBI
mRatBN7.2	X	134,555,436 - 134,614,928 (+)	NCBI
Rnor_6.0	X	159,112,516 - 159,172,526 (+)	NCBI
Rnor_5.0	X	153,743,208 - 153,803,160 (+)	NCBI

Sequence:

show sequence

TCAACCGCCCGGCCGAGGGGGCTCAGTCCGCTGCCGCCGCTGTCCCTGCCGCGCTTTGCTCTCT
GAGCTGGCAGCGGCCGCCGGTGCCGCCTAGACAGCTGCGCGGGTCCCTCCAGCTATAAGGTGGG
CACCATGTCTGAGAAGTTCGACTGTCACTACTGCAGGGACCCCTTGCAGGGGAAGAAGTATGTG
CAGAAGGATGGCCGTCACTGCTGCCTGAAGTGCTTTGACAAGTTCTGCGCCAACACCTGCGTGG
AATGCCGCAAGCCCATAAGCGCTGATGCTAAGGAGGTGCACTATAAGAATCGCTACTGGCACGA
CACCTGCTTCCGCTGTGCCAAGTGCCTTCACCCCTTGGCCAGTGAGACCTTTGTGTCCAAGGAT
GGCAAGATCCTGTGCAACAAGTGCGCCACTCGGGAGGACTCCCCCAGGTGCAAAGGGTGCTTCA
AGGCCATTGTGGCAGGAGACCAGAATGTGGAGTACAAGGGCACCATCTGGCATAAAGACTGCTT
CACCTGCAGCAACTGCAAGCAAGTCATTGGGACCGGAAGCTTCTTCCCGAAAGGGGAGGACTTC
TACTGTGTGACTTGCCATGAGACCAAGTTTGCCAAGCATTGCGTGAAATGCAACAAGGCCATCA
CATCTGGAGGAATCACTTACCAGGATCAGCCCTGGCATGCCGAGTGCTTTGTGTGTGTTACCTG
CTCTAAGAAGCTGGCGGGGCAGCGTTTCACCGCTGTGGAGGACCAGTATTACTGCGTGGATTGC
TACAAGAACTTTGTGGCCAAGAAGTGTGCTGGATGCAAGAACCCCATCACTGGGAAAAGGACTG
TGTCAAGAGTGAGCCACCCAGTCTCTAAAGCTAGGAAGTCCCCAGTGTGCCACGGGAAACGCTT
GCCTCTCACCCTGTTTCCCAGCGCCAACCTCCGGGGCAGGCATCCGGGTGGAGAGAGGACTTGT
CCCTCGTGGGTGGTGGTTCTTTATAGAAAAAATCGAAGCTTAGCAGCTCCTCGAGGCCCGGGTT
TGGTAAAGGCTCCAGTGTGGTGGCCTATGAAGGACAATCCTGGCACGACTACTGCTTCCACTGC
AAAAAATGCTCCGTGAATCTGGCCAACAAGCGCTTTGTCTTTCATAATGAGCAGGTGTATTGTC
CTGACTGTGCCAAAAAGCTGTAACTTGACAGGGGCTCCTGTCCTGTAAAATGGCATTTGAAGCA
TACTTTGTGTCCTTTGCTCACTCTCTCTGCACCATCCATAGGGCAAGAGTGGGCTTTCACCTCT
TTCAAATTGCTCTTTCTGTCTTTGCTCTCATTTTACAGTATTAATCAACCGAGGACACACAGTG
ATCATATTAGAATTTAGAAAAGAGCAACCTCGCAGCAAAAATAATTTCTCTGTTGCTGCAATGG
CAAAACAAAAACGTAGACTGACTCTTCTGCATGTTTCCCATAGAGCAGAAAAGTGCTAACCATG
TAGCCACTTCATGATGCAAGCAAAAAGCATAGGCGACAAAGTTCCCACTGAGATGCCTTTGGGG
CTCAGTCGGGACGCACTGTGCGGTCACGTGACTGCTGTGCAGGAGTTGCAGCGGCTGCTCCAAC
TCCCTCCTCGCCTTTTTAAGAACTTGCCAGAATGCATGGTTTAACTTCCTTATCAAAACTCTGA
CCTCCCTTCTGTTCTTTTGTGCTTTCACACGACTAACACAGATTTCCAGAGAACTAACATTTTG
AACTTTGCTGTAATTCTCAAGTGACTTTCCCCCCCTACTAATGTTTGACTCCCCTATGTGGCGT
GTTCTCTGAGCGTTCCTACTTTAAACCATGGAACACAGGTGATTTGGAGCACCTAAGCAGATCT
GAGCAAACAAGCCTGTTTCAGAACAAACTCGCCACGGTGACTACTTCTGGAAGCTTAACAAGAC
TAACTCTCCTGTCCTTTTTCATTTTTTTTAAAAATTTTGTTTTAATGAGTAGTAAAATAGTTTA
TGGAGTTGGAAACTTGCATGACAATATATGAGCCTCCTCAAACGTTCCTGCAGTTTTGCGATTG
ATCCTGTAGAAGTGACAAAAGCTCTAGAGTGGCAGCTGAGCAGGCACAGGGCTGTCATCAACAA
GAATACGTTTCAAAGTAGTGACAAGGTGAAGTCCTTGTAGCATAACCATTGTCTGCTCTTTGTC
TGCGTTCAGGAAGAGTGCAGAGTCCCTTTCCTTGTGATTCCTAGAGAACTTTCCCTGCAGAGTT
GAGTTAGATCTCTGGGGCTGTCAGGGTAGCCCTCACCCTTTACAGGCAGGGCTGGGTTTCCTCC
TCCTCTGAAATGCAGGATTGCCTCCCTGATCGTACTCTCCATTATACCACATGTATAACGAGCC
AATATCAAAGTAAAGATGTAATGAAAATACACTCATATATTACTGTAGGAGTGCTTCTAGATGC
CCACACCTCATTTCCATATTTGTCATTAGCTGTTTCCATCGAATGTTTCAATGTATCCTTACAA
AAATAAAGCAGCATAGAAAGAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001029098	(Get FASTA)	NCBI Sequence Viewer
	NP_001258128	(Get FASTA)	NCBI Sequence Viewer
	NP_001258129	(Get FASTA)	NCBI Sequence Viewer
	NP_001258130	(Get FASTA)	NCBI Sequence Viewer
	NP_663702	(Get FASTA)	NCBI Sequence Viewer
	XP_006257733	(Get FASTA)	NCBI Sequence Viewer
	XP_006257734	(Get FASTA)	NCBI Sequence Viewer
	XP_006257735	(Get FASTA)	NCBI Sequence Viewer
	XP_006257736	(Get FASTA)	NCBI Sequence Viewer
	XP_006257737	(Get FASTA)	NCBI Sequence Viewer
	XP_006257738	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAD32624	(Get FASTA)	NCBI Sequence Viewer
	AAH61782	(Get FASTA)	NCBI Sequence Viewer
	AAM63550	(Get FASTA)	NCBI Sequence Viewer
	EDL75137	(Get FASTA)	NCBI Sequence Viewer
	EDL75138	(Get FASTA)	NCBI Sequence Viewer
	EDL75139	(Get FASTA)	NCBI Sequence Viewer
	EDL75140	(Get FASTA)	NCBI Sequence Viewer
	EDL75141	(Get FASTA)	NCBI Sequence Viewer
	EDL75142	(Get FASTA)	NCBI Sequence Viewer
	EDL75143	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000001169
	ENSRNOP00000001169.5
	ENSRNOP00000049677
	ENSRNOP00000049677.4
	ENSRNOP00000072490
	ENSRNOP00000072490.1
	ENSRNOP00000074052
	ENSRNOP00000074052.1
	ENSRNOP00000074817
	ENSRNOP00000074817.2
	ENSRNOP00000088085
	ENSRNOP00000088085.1
	ENSRNOP00055040493
	ENSRNOP00060034588
	ENSRNOP00065040707
GenBank Protein	Q9WUH4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_663702 ⟸ NM_145669
- Peptide Label:	isoform 2
- UniProtKB:	Q8K3G3 (UniProtKB/TrEMBL), F8WFH4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASQRHSGPSSYKVGTMSEKFDCHYCRDPLQGKKYVQKDGRHCCLKCFDKFCANTCVECRKPIS ADAKEVHYKNRYWHDTCFRCAKCLHPLASETFVSKDGKILCNKCATREDSPRCKGCFKAIVAGD QNVEYKGTIWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKGLVKAPVWW PMKDNPGTTTASTAKNAP hide sequence

RefSeq Acc Id:	NP_001029098 ⟸ NM_001033926
- Peptide Label:	isoform 1
- UniProtKB:	Q6P792 (UniProtKB/TrEMBL), A0A8I6A745 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASQRHSGPSSYKVGTMSEKFDCHYCRDPLQGKKYVQKDGRHCCLKCFDKFCANTCVECRKPIS ADAKEVHYKNRYWHDTCFRCAKCLHPLASETFVSKDGKILCNKCATREDSPRCKGCFKAIVAGD QNVEYKGTIWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAITSGGITY QDQPWHAECFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGFGKGSSVVAY EGQSWHDYCFHCKKCSVNLANKRFVFHNEQVYCPDCAKKL hide sequence

RefSeq Acc Id:	NP_001258128 ⟸ NM_001271199
- Peptide Label:	isoform 3
- UniProtKB:	Q9WUH4 (UniProtKB/Swiss-Prot), A6KSP3 (UniProtKB/TrEMBL), A0A8I6A745 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSEKFDCHYCRDPLQGKKYVQKDGRHCCLKCFDKFCANTCVECRKPISADAKEVHYKNRYWHDT CFRCAKCLHPLASETFVSKDGKILCNKCATREDSPRCKGCFKAIVAGDQNVEYKGTIWHKDCFT CSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAITSGGITYQDQPWHAECFVCVTCS KKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCS VNLANKRFVFHNEQVYCPDCAKKL hide sequence

RefSeq Acc Id:	NP_001258129 ⟸ NM_001271200
- Peptide Label:	isoform 3
- UniProtKB:	Q9WUH4 (UniProtKB/Swiss-Prot), A6KSP3 (UniProtKB/TrEMBL), A0A8I6A745 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSEKFDCHYCRDPLQGKKYVQKDGRHCCLKCFDKFCANTCVECRKPISADAKEVHYKNRYWHDT CFRCAKCLHPLASETFVSKDGKILCNKCATREDSPRCKGCFKAIVAGDQNVEYKGTIWHKDCFT CSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAITSGGITYQDQPWHAECFVCVTCS KKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCS VNLANKRFVFHNEQVYCPDCAKKL hide sequence

RefSeq Acc Id:	NP_001258130 ⟸ NM_001271201
- Peptide Label:	isoform 4
- UniProtKB:	A6KSP7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSEKFDCHYCRDPLQGKKYVQKDGRHCCLKCFDKFCANTCVECRKPISADAKEVHYKNRYWHDT CFRCAKCLHPLASETFVSKDGKILCNKCATREDSPRCKGCFKAIVAGDQNVEYKGTIWHKDCFT CSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKGLVKAPVWWPMKDNPGTTTASTAKN AP hide sequence

RefSeq Acc Id:	XP_006257738 ⟸ XM_006257676
- Peptide Label:	isoform X2
- UniProtKB:	A6KSP6 (UniProtKB/TrEMBL), A0A8L2R9G0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSEKFDCHYCRDPLQGKKYVQKDGRHCCLKCFDKFCANTCVECRKPISADAKEVHYKNRYWHDT CFRCAKCLHPLASETFVSKDGKILCNKCATREDSPRCKGCFKAIVAGDQNVEYKGTIWHKDCFT CSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAITSGGITYQDQPWHAECFVCVTCS KKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGKRTVSRVSHPVSKARKSPVCHGKRLP LTLFPSANLRGRHPGGERTCPSWVVVLYRKNRSLAAPRGPGLVKAPVWWPMKDNPGTTTASTAK NAP hide sequence

RefSeq Acc Id:	XP_006257736 ⟸ XM_006257674
- Peptide Label:	isoform X2
- UniProtKB:	A6KSP6 (UniProtKB/TrEMBL), A0A8L2R9G0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSEKFDCHYCRDPLQGKKYVQKDGRHCCLKCFDKFCANTCVECRKPISADAKEVHYKNRYWHDT CFRCAKCLHPLASETFVSKDGKILCNKCATREDSPRCKGCFKAIVAGDQNVEYKGTIWHKDCFT CSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAITSGGITYQDQPWHAECFVCVTCS KKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGKRTVSRVSHPVSKARKSPVCHGKRLP LTLFPSANLRGRHPGGERTCPSWVVVLYRKNRSLAAPRGPGLVKAPVWWPMKDNPGTTTASTAK NAP hide sequence

RefSeq Acc Id:	XP_006257734 ⟸ XM_006257672
- Peptide Label:	isoform X2
- UniProtKB:	A6KSP6 (UniProtKB/TrEMBL), A0A8L2R9G0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSEKFDCHYCRDPLQGKKYVQKDGRHCCLKCFDKFCANTCVECRKPISADAKEVHYKNRYWHDT CFRCAKCLHPLASETFVSKDGKILCNKCATREDSPRCKGCFKAIVAGDQNVEYKGTIWHKDCFT CSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAITSGGITYQDQPWHAECFVCVTCS KKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGKRTVSRVSHPVSKARKSPVCHGKRLP LTLFPSANLRGRHPGGERTCPSWVVVLYRKNRSLAAPRGPGLVKAPVWWPMKDNPGTTTASTAK NAP hide sequence

RefSeq Acc Id:	XP_006257735 ⟸ XM_006257673
- Peptide Label:	isoform X2
- UniProtKB:	A6KSP6 (UniProtKB/TrEMBL), A0A8L2R9G0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSEKFDCHYCRDPLQGKKYVQKDGRHCCLKCFDKFCANTCVECRKPISADAKEVHYKNRYWHDT CFRCAKCLHPLASETFVSKDGKILCNKCATREDSPRCKGCFKAIVAGDQNVEYKGTIWHKDCFT CSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAITSGGITYQDQPWHAECFVCVTCS KKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGKRTVSRVSHPVSKARKSPVCHGKRLP LTLFPSANLRGRHPGGERTCPSWVVVLYRKNRSLAAPRGPGLVKAPVWWPMKDNPGTTTASTAK NAP hide sequence

RefSeq Acc Id:	XP_006257733 ⟸ XM_006257671
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K338 (UniProtKB/TrEMBL), A0A8L2R9G0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASQRHSGPSSYKVGTMSEKFDCHYCRDPLQGKKYVQKDGRHCCLKCFDKFCANTCVECRKPIS ADAKEVHYKNRYWHDTCFRCAKCLHPLASETFVSKDGKILCNKCATREDSPRCKGCFKAIVAGD QNVEYKGTIWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAITSGGITY QDQPWHAECFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGKRTVSRVSHP VSKARKSPVCHGKRLPLTLFPSANLRGRHPGGERTCPSWVVVLYRKNRSLAAPRGPGLVKAPVW WPMKDNPGTTTASTAKNAP hide sequence

RefSeq Acc Id:	XP_006257737 ⟸ XM_006257675
- Peptide Label:	isoform X2
- UniProtKB:	A6KSP6 (UniProtKB/TrEMBL), A0A8L2R9G0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSEKFDCHYCRDPLQGKKYVQKDGRHCCLKCFDKFCANTCVECRKPISADAKEVHYKNRYWHDT CFRCAKCLHPLASETFVSKDGKILCNKCATREDSPRCKGCFKAIVAGDQNVEYKGTIWHKDCFT CSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAITSGGITYQDQPWHAECFVCVTCS KKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGKRTVSRVSHPVSKARKSPVCHGKRLP LTLFPSANLRGRHPGGERTCPSWVVVLYRKNRSLAAPRGPGLVKAPVWWPMKDNPGTTTASTAK NAP hide sequence

RefSeq Acc Id:

ENSRNOP00000049677 ⟸ ENSRNOT00000043820

RefSeq Acc Id:

ENSRNOP00000074052 ⟸ ENSRNOT00000084594

RefSeq Acc Id:

ENSRNOP00000074817 ⟸ ENSRNOT00000087274

RefSeq Acc Id:

ENSRNOP00000072490 ⟸ ENSRNOT00000083502

RefSeq Acc Id:

ENSRNOP00000001169 ⟸ ENSRNOT00000001169

RefSeq Acc Id:

ENSRNOP00000088085 ⟸ ENSRNOT00000110431

Protein Domains

LIM zinc-binding

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9WUH4-F1-model_v2	AlphaFold	Q9WUH4	1-280	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13702068

Promoter ID:

EPDNEW_R12592

Type:

initiation region

Name:

Fhl1_2

Description:

four and a half LIM domains 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R12594 EPDNEW_R12593

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	159,112,812 - 159,112,872	EPDNEW

RGD ID:

13702076

Promoter ID:

EPDNEW_R12593

Type:

multiple initiation site

Name:

Fhl1_1

Description:

four and a half LIM domains 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R12592 EPDNEW_R12594

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	159,158,220 - 159,158,280	EPDNEW

RGD ID:

13702070

Promoter ID:

EPDNEW_R12594

Type:

multiple initiation site

Name:

Fhl1_3

Description:

four and a half LIM domains 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R12592 EPDNEW_R12593

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	159,165,184 - 159,165,244	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:2615	AgrOrtholog
BioCyc Gene	G2FUF-917	BioCyc
Ensembl Genes	ENSRNOG00000000875	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055028270	UniProtKB/Swiss-Prot
	ENSRNOG00060023720	UniProtKB/Swiss-Prot
	ENSRNOG00065028640	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000001169	ENTREZGENE
	ENSRNOT00000001169.7	UniProtKB/TrEMBL
	ENSRNOT00000043820.6	UniProtKB/TrEMBL
	ENSRNOT00000083502.2	UniProtKB/TrEMBL
	ENSRNOT00000084594	ENTREZGENE
	ENSRNOT00000084594.2	UniProtKB/Swiss-Prot
	ENSRNOT00000087274.2	UniProtKB/TrEMBL
	ENSRNOT00000110431	ENTREZGENE
	ENSRNOT00000110431.1	UniProtKB/TrEMBL
	ENSRNOT00055049214	UniProtKB/Swiss-Prot
	ENSRNOT00060041726	UniProtKB/Swiss-Prot
	ENSRNOT00065049584	UniProtKB/Swiss-Prot
Gene3D-CATH	Cysteine Rich Protein	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:5623247	IMAGE-MGC_LOAD
InterPro	Fhl1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_LIM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:25177	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:72291	IMAGE-MGC_LOAD
NCBI Gene	25177	ENTREZGENE
PANTHER	FOUR AND A HALF LIM DOMAINS PROTEIN 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FOUR AND A HALF LIM DOMAINS PROTEIN 1	UniProtKB/TrEMBL
	PTHR47029	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	LIM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Fhl1	PhenoGen
PROSITE	LIM_DOMAIN_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	LIM_DOMAIN_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000000875	RatGTEx
	ENSRNOG00055028270	RatGTEx
	ENSRNOG00060023720	RatGTEx
	ENSRNOG00065028640	RatGTEx
SMART	LIM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2K338	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A745	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2R9G0	ENTREZGENE, UniProtKB/TrEMBL
	A6KSP3	ENTREZGENE, UniProtKB/TrEMBL
	A6KSP6	ENTREZGENE, UniProtKB/TrEMBL
	A6KSP7	ENTREZGENE, UniProtKB/TrEMBL
	F7F3F1_RAT	UniProtKB/TrEMBL
	F8WFH4	ENTREZGENE, UniProtKB/TrEMBL
	FHL1_RAT	UniProtKB/Swiss-Prot
	Q6P792	ENTREZGENE, UniProtKB/TrEMBL
	Q8K3G3	ENTREZGENE, UniProtKB/TrEMBL
	Q9WUH4	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2002-11-06	Fhl1	four and a half LIM domains 1		Four and a half LIM domains 1 (skeletal muscle LIM-protein 1)	Name updated	625702	APPROVED
2002-06-10	Fhl1	Four and a half LIM domains 1 (skeletal muscle LIM-protein 1)			Symbol and Name status set to approved	70586	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM