Auts2 (activator of transcription and developmental regulator AUTS2) - Rat Genome Database

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Gene: Auts2 (activator of transcription and developmental regulator AUTS2) Rattus norvegicus
Analyze
Symbol: Auts2
Name: activator of transcription and developmental regulator AUTS2
RGD ID: 2323959
Description: Predicted to enable chromatin binding activity. Predicted to be involved in several processes, including generation of neurons; positive regulation of Rac protein signal transduction; and positive regulation of lamellipodium assembly. Predicted to act upstream of or within innate vocalization behavior; positive regulation of transcription by RNA polymerase II; and righting reflex. Predicted to be located in growth cone and nucleus. Predicted to colocalize with actin cytoskeleton. Human ortholog(s) of this gene implicated in autosomal dominant intellectual developmental disorder 26. Orthologous to human AUTS2 (activator of transcription and developmental regulator AUTS2); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: autism susceptibility candidate 2; autism susceptibility candidate 2-like; autism susceptibility candidate 2-like 1; AUTS2, activator of transcription and developmental regulator; Auts2l; Auts2l1; LOC100362819
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81229,739,138 - 30,830,386 (+)NCBIGRCr8
mRatBN7.21224,104,187 - 25,194,123 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1224,104,192 - 25,194,416 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01227,155,362 - 28,252,752 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1228,212,333 - 28,251,816 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01229,128,927 - 30,213,265 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41226,069,494 - 26,166,764 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.41225,518,248 - 25,541,023 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11225,934,719 - 26,030,511 (+)NCBI
Celera1225,842,313 - 26,925,231 (+)NCBICelera
Cytogenetic Map12q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2-methylcholine  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
buta-1,3-diene  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
chlordecone  (ISO)
choline  (ISO)
cisplatin  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
fenvalerate  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gallic acid  (ISO)
inulin  (ISO)
isoprenaline  (ISO)
L-ascorbic acid  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
menadione  (ISO)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N,N-diethyl-m-toluamide  (EXP)
nickel sulfate  (ISO)
ozone  (ISO)
paracetamol  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
permethrin  (EXP)
phenylephrine  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium dichromate  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
titanium dioxide  (ISO)
topotecan  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19948250   PMID:21873635   PMID:25519132   PMID:25533347  


Genomics

Comparative Map Data
Auts2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81229,739,138 - 30,830,386 (+)NCBIGRCr8
mRatBN7.21224,104,187 - 25,194,123 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1224,104,192 - 25,194,416 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01227,155,362 - 28,252,752 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1228,212,333 - 28,251,816 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01229,128,927 - 30,213,265 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41226,069,494 - 26,166,764 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.41225,518,248 - 25,541,023 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11225,934,719 - 26,030,511 (+)NCBI
Celera1225,842,313 - 26,925,231 (+)NCBICelera
Cytogenetic Map12q12NCBI
AUTS2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38769,598,475 - 70,793,506 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl769,598,296 - 70,793,506 (+)EnsemblGRCh38hg38GRCh38
GRCh37769,063,461 - 70,258,492 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36768,702,255 - 69,895,790 (+)NCBINCBI36Build 36hg18NCBI36
Build 34768,508,969 - 69,702,505NCBI
Celera762,444,993 - 63,639,505 (+)NCBICelera
Cytogenetic Map7q11.22NCBI
HuRef765,242,247 - 66,436,087 (+)NCBIHuRef
CHM1_1769,159,054 - 70,352,884 (+)NCBICHM1_1
T2T-CHM13v2.0770,821,258 - 72,017,159 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2768,403,004 - 69,597,617 (+)NCBI
Auts2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395131,466,171 - 132,572,059 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5131,466,171 - 132,572,183 (-)EnsemblGRCm39 Ensembl
GRCm385131,437,333 - 132,543,220 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5131,437,333 - 132,543,344 (-)EnsemblGRCm38mm10GRCm38
MGSCv375131,913,552 - 133,018,213 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365132,053,114 - 132,827,107 (-)NCBIMGSCv36mm8
Celera5128,451,472 - 129,550,457 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map570.66NCBI
Auts2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545610,296,377 - 10,322,455 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545610,294,525 - 11,417,761 (-)NCBIChiLan1.0ChiLan1.0
AUTS2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2685,110,042 - 86,303,277 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17133,437,194 - 134,629,600 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0764,822,964 - 66,015,831 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1777,496,741 - 78,686,763 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl777,495,909 - 78,686,763 (+)Ensemblpanpan1.1panPan2
AUTS2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.162,747,288 - 3,875,774 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl62,748,598 - 3,875,611 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha64,445,234 - 5,579,702 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.062,564,894 - 3,693,933 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl62,564,901 - 3,693,724 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.162,486,676 - 3,624,247 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.062,499,011 - 3,626,892 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.062,667,270 - 3,795,594 (-)NCBIUU_Cfam_GSD_1.0
Auts2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344127,849,011 - 128,840,909 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365435,146,961 - 6,187,634 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AUTS2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl313,565,281 - 14,794,365 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1313,565,439 - 14,794,365 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2313,957,636 - 14,944,320 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AUTS2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1284,565,958 - 5,759,088 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl284,567,622 - 4,595,056 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607010,993,492 - 12,006,970 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Auts2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474010,341,274 - 10,367,075 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474010,339,411 - 11,463,292 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Auts2
9034 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:37
Count of miRNA genes:36
Interacting mature miRNAs:37
Transcripts:ENSRNOT00000001182
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12844949028302290Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12852542328064601Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)12931821632103380Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121047413746669029Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121047413746669029Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121107382524234895Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382528064557Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382545055165Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121235161946669029Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121281238546669029Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121281238546669029Rat
1549902Bp269Blood pressure QTL 269arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121318273646669029Rat
1549912Bp268Blood pressure QTL 268arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)101318273646669029Rat
2302060Pia37Pristane induced arthritis QTL 376.10.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)121319815746669029Rat
61416Pia4Pristane induced arthritis QTL 48.4joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)121363552330827399Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121363552335682913Rat
631543Bp83Blood pressure QTL 835.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121555082638478808Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)121587265332974238Rat
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)121914436246669029Rat
2306789Ean6Experimental allergic neuritis QTL 64.9nervous system integrity trait (VT:0010566)experimental autoimmune neuritis severity score (CMO:0001528)121961087024139202Rat
737822Alc10Alcohol consumption QTL 102.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)121961087040218516Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961087042828880Rat
61324Eae5Experimental allergic encephalomyelitis QTL 514nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)121961087046669029Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961088935682913Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121983578938193007Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122032881946669029Rat
70169Eae13Experimental allergic encephalomyelitis QTL 130.032nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)122413920236638073Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)122423477731894213Rat

Markers in Region
D12Mgh3  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,234,777 - 24,234,895 (+)MAPPERmRatBN7.2
Rnor_6.01227,285,473 - 27,285,590NCBIRnor6.0
Rnor_5.01229,257,552 - 29,257,669UniSTSRnor5.0
RGSC_v3.41225,271,824 - 25,271,941UniSTSRGSC3.4
RGSC_v3.41225,271,823 - 25,271,941RGDRGSC3.4
RGSC_v3.11225,134,969 - 25,135,323RGD
Celera1225,971,194 - 25,971,311UniSTS
RH 3.4 Map12405.5UniSTS
RH 3.4 Map12405.5RGD
RH 2.0 Map12285.3RGD
Cytogenetic Map12q12UniSTS
D12Rat12  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01227,911,196 - 27,911,339NCBIRnor6.0
RGSC_v3.41225,802,539 - 25,802,828RGDRGSC3.4
RGSC_v3.41225,802,584 - 25,802,727UniSTSRGSC3.4
RGSC_v3.11225,665,800 - 25,665,943RGD
Celera1226,588,247 - 26,588,390UniSTS
RH 3.4 Map12424.3UniSTS
RH 3.4 Map12424.3RGD
RH 2.0 Map12297.9RGD
SHRSP x BN Map1227.31RGD
FHH x ACI Map1212.29RGD
Cytogenetic Map12q12UniSTS
D12Rat23  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,139,057 - 24,139,202 (+)MAPPERmRatBN7.2
Rnor_6.01227,190,096 - 27,190,240NCBIRnor6.0
Rnor_5.01229,163,046 - 29,163,190UniSTSRnor5.0
RGSC_v3.41225,367,106 - 25,367,251RGDRGSC3.4
RGSC_v3.41225,367,107 - 25,367,251UniSTSRGSC3.4
RGSC_v3.11225,230,197 - 25,230,561RGD
Celera1225,875,595 - 25,875,739UniSTS
SHRSP x BN Map1227.31UniSTS
SHRSP x BN Map1227.31RGD
FHH x ACI Map1211.22RGD
Cytogenetic Map12q12UniSTS
D12Rat11  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,956,669 - 24,956,834 (+)MAPPERmRatBN7.2
Rnor_6.01228,014,147 - 28,014,311NCBIRnor6.0
Rnor_5.01229,979,515 - 29,979,679UniSTSRnor5.0
RGSC_v3.41225,905,756 - 25,905,921RGDRGSC3.4
RGSC_v3.41225,905,757 - 25,905,921UniSTSRGSC3.4
RGSC_v3.11225,768,972 - 25,769,137RGD
Celera1226,689,778 - 26,689,938UniSTS
SHRSP x BN Map1227.24UniSTS
SHRSP x BN Map1227.24RGD
Cytogenetic Map12q12UniSTS
D12Rat13  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,825,686 - 24,825,856 (+)MAPPERmRatBN7.2
Rnor_6.01227,882,828 - 27,882,997NCBIRnor6.0
Rnor_5.01229,849,769 - 29,849,938UniSTSRnor5.0
RGSC_v3.41225,773,602 - 25,774,160RGDRGSC3.4
RGSC_v3.41225,773,966 - 25,774,135UniSTSRGSC3.4
RGSC_v3.11225,637,182 - 25,637,351RGD
Celera1226,559,619 - 26,559,788UniSTS
RH 3.4 Map12433.8RGD
RH 3.4 Map12433.8UniSTS
SHRSP x BN Map1227.31UniSTS
SHRSP x BN Map1227.31RGD
FHH x ACI Map1212.29RGD
Cytogenetic Map12q12UniSTS
D12Rat27  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,812,101 - 24,812,308 (+)MAPPERmRatBN7.2
Rnor_6.01227,869,409 - 27,869,615NCBIRnor6.0
Rnor_5.01229,836,557 - 29,836,763UniSTSRnor5.0
RGSC_v3.41225,760,364 - 25,760,571RGDRGSC3.4
RGSC_v3.41225,760,365 - 25,760,571UniSTSRGSC3.4
RGSC_v3.11225,623,581 - 25,623,787RGD
Celera1226,546,235 - 26,546,444UniSTS
RH 3.4 Map12426.4RGD
RH 3.4 Map12426.4UniSTS
SHRSP x BN Map1227.24UniSTS
SHRSP x BN Map1227.24RGD
FHH x ACI Map1212.29RGD
Cytogenetic Map12q12UniSTS
D12Rat45  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21225,157,460 - 25,157,706 (+)MAPPERmRatBN7.2
Rnor_6.01228,217,098 - 28,217,343NCBIRnor6.0
Rnor_5.01230,177,794 - 30,178,039UniSTSRnor5.0
RGSC_v3.41226,132,118 - 26,132,364RGDRGSC3.4
RGSC_v3.41226,132,119 - 26,132,364UniSTSRGSC3.4
RGSC_v3.11225,995,334 - 25,995,580RGD
Celera1226,887,907 - 26,888,152UniSTS
SHRSP x BN Map1227.31UniSTS
SHRSP x BN Map1227.31RGD
FHH x ACI Map1213.34RGD
Cytogenetic Map12q12UniSTS
D12Rat82  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01229,978,539 - 29,978,675UniSTSRnor5.0
RGSC_v3.41225,904,400 - 25,904,537RGDRGSC3.4
RGSC_v3.41225,904,401 - 25,904,537UniSTSRGSC3.4
RGSC_v3.11225,767,422 - 25,767,820RGD
FHH x ACI Map1212.29UniSTS
FHH x ACI Map1212.29RGD
D12Rat74  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,925,088 - 24,925,229 (+)MAPPERmRatBN7.2
Rnor_6.01227,982,030 - 27,982,170NCBIRnor6.0
Rnor_5.01229,947,974 - 29,948,114UniSTSRnor5.0
RGSC_v3.41225,873,969 - 25,874,110RGDRGSC3.4
RGSC_v3.41225,873,970 - 25,874,110UniSTSRGSC3.4
RGSC_v3.11225,737,005 - 25,737,364RGD
Celera1226,658,941 - 26,659,081UniSTS
SHRSP x BN Map1227.31UniSTS
SHRSP x BN Map1227.31RGD
Cytogenetic Map12q12UniSTS
D12Got57  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,605,757 - 24,605,919 (+)MAPPERmRatBN7.2
Rnor_6.01227,658,780 - 27,658,941NCBIRnor6.0
Rnor_5.01229,628,532 - 29,628,693UniSTSRnor5.0
RGSC_v3.41225,549,856 - 25,550,018RGDRGSC3.4
RGSC_v3.41225,549,857 - 25,550,018UniSTSRGSC3.4
RGSC_v3.11225,413,073 - 25,413,234RGD
Celera1226,339,952 - 26,340,103UniSTS
RH 3.4 Map12407.7UniSTS
RH 3.4 Map12407.7RGD
RH 2.0 Map12317.9RGD
Cytogenetic Map12q12UniSTS
D12Got211  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,792,400 - 24,792,525 (+)MAPPERmRatBN7.2
Rnor_6.01227,850,096 - 27,850,220NCBIRnor6.0
Rnor_5.01229,817,244 - 29,817,368UniSTSRnor5.0
RGSC_v3.41225,740,663 - 25,740,787UniSTSRGSC3.4
Celera1226,526,601 - 26,526,725UniSTS
Cytogenetic Map12 RGD
D12Uwm1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera1226,207,355 - 26,207,550UniSTS
Cytogenetic Map12q12UniSTS
D12Got212  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21225,000,469 - 25,000,690 (+)MAPPERmRatBN7.2
Rnor_6.01228,059,696 - 28,059,916NCBIRnor6.0
Rnor_5.01230,024,738 - 30,024,958UniSTSRnor5.0
RGSC_v3.41225,950,341 - 25,950,561UniSTSRGSC3.4
Celera1226,733,440 - 26,733,660UniSTS
Cytogenetic Map12 RGD
D5Mit324  
Rat AssemblyChrPosition (strand)SourceJBrowse
RGSC_v3.41225,399,377 - 25,399,502UniSTSRGSC3.4
Cytogenetic Map12q12UniSTS
RH143368  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21225,095,095 - 25,095,254 (+)MAPPERmRatBN7.2
Rnor_6.01228,155,432 - 28,155,590NCBIRnor6.0
Rnor_5.01230,116,628 - 30,116,786UniSTSRnor5.0
RGSC_v3.41226,069,730 - 26,069,888UniSTSRGSC3.4
Celera1226,826,580 - 26,826,738UniSTS
RH 3.4 Map12422.9UniSTS
Cytogenetic Map12q12UniSTS
BF386703  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera1226,190,187 - 26,190,346UniSTS
RH 3.4 Map12403.91UniSTS
Cytogenetic Map12q12UniSTS
BE115872  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21225,189,310 - 25,189,461 (+)MAPPERmRatBN7.2
Rnor_6.01228,249,203 - 28,249,353NCBIRnor6.0
Rnor_5.01230,209,899 - 30,210,049UniSTSRnor5.0
RGSC_v3.41226,163,968 - 26,164,118UniSTSRGSC3.4
Celera1226,919,738 - 26,919,888UniSTS
RH 3.4 Map12269.61UniSTS
Cytogenetic Map12q12UniSTS
RH140659  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,997,621 - 24,997,806 (+)MAPPERmRatBN7.2
Rnor_6.01228,056,844 - 28,057,028NCBIRnor6.0
Rnor_5.01230,022,212 - 30,022,396UniSTSRnor5.0
RGSC_v3.41225,947,307 - 25,947,491UniSTSRGSC3.4
Celera1226,730,593 - 26,730,777UniSTS
RH 3.4 Map12424.4UniSTS
Cytogenetic Map12q12UniSTS
RH141576  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,775,796 - 24,776,012 (+)MAPPERmRatBN7.2
Rnor_6.01227,833,516 - 27,833,731NCBIRnor6.0
Rnor_5.01229,801,060 - 29,801,275UniSTSRnor5.0
RGSC_v3.41225,724,057 - 25,724,272UniSTSRGSC3.4
Celera1226,509,807 - 26,510,022UniSTS
RH 3.4 Map12402.41UniSTS
Cytogenetic Map12q12UniSTS
R75209  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21225,191,760 - 25,191,929 (+)MAPPERmRatBN7.2
Rnor_6.01228,251,653 - 28,251,821NCBIRnor6.0
Rnor_5.01230,212,349 - 30,212,517UniSTSRnor5.0
RGSC_v3.41226,166,418 - 26,166,586UniSTSRGSC3.4
Celera1226,922,188 - 26,922,356UniSTS
Cytogenetic Map12q12UniSTS
RH142495  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,875,269 - 24,875,371 (+)MAPPERmRatBN7.2
Rnor_6.01227,932,115 - 27,932,216NCBIRnor6.0
Rnor_5.01229,898,018 - 29,898,119UniSTSRnor5.0
RGSC_v3.41225,823,450 - 25,823,551UniSTSRGSC3.4
Celera1226,609,145 - 26,609,246UniSTS
RH 3.4 Map12425.2UniSTS
Cytogenetic Map12q12UniSTS
RH142855  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,949,867 - 24,949,995 (+)MAPPERmRatBN7.2
Rnor_6.01228,007,381 - 28,007,508NCBIRnor6.0
Rnor_5.01229,973,325 - 29,973,452UniSTSRnor5.0
RGSC_v3.41225,898,795 - 25,898,922UniSTSRGSC3.4
Celera1226,683,414 - 26,683,541UniSTS
RH 3.4 Map12424.4UniSTS
Cytogenetic Map12q12UniSTS
RH143225  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,364,165 - 24,364,299 (+)MAPPERmRatBN7.2
Rnor_6.01227,414,013 - 27,414,146NCBIRnor6.0
Rnor_5.01229,386,758 - 29,386,891UniSTSRnor5.0
RGSC_v3.41225,142,798 - 25,142,931UniSTSRGSC3.4
Celera1226,100,088 - 26,100,221UniSTS
RH 3.4 Map12403.91UniSTS
Cytogenetic Map12q12UniSTS
RH144305  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,290,586 - 24,290,688 (+)MAPPERmRatBN7.2
Rnor_6.01227,341,278 - 27,341,379NCBIRnor6.0
Rnor_5.01229,313,357 - 29,313,458UniSTSRnor5.0
RGSC_v3.41225,216,174 - 25,216,275UniSTSRGSC3.4
Celera1226,026,999 - 26,027,100UniSTS
RH 3.4 Map12403.21UniSTS
Cytogenetic Map12q12UniSTS
BF386235  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,637,499 - 24,637,718 (+)MAPPERmRatBN7.2
Rnor_6.01227,691,531 - 27,691,749NCBIRnor6.0
Rnor_5.01229,660,839 - 29,661,057UniSTSRnor5.0
RGSC_v3.41225,582,998 - 25,583,216UniSTSRGSC3.4
Celera1226,371,755 - 26,371,973UniSTS
RH 3.4 Map12405.9UniSTS
Cytogenetic Map12q12UniSTS
BE102361  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,651,700 - 24,651,850 (+)MAPPERmRatBN7.2
Rnor_6.01227,705,709 - 27,705,858NCBIRnor6.0
Rnor_5.01229,675,017 - 29,675,166UniSTSRnor5.0
RGSC_v3.41225,597,196 - 25,597,345UniSTSRGSC3.4
Celera1226,385,951 - 26,386,100UniSTS
RH 3.4 Map12404.01UniSTS
Cytogenetic Map12q12UniSTS
BF387056  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,828,035 - 24,828,205 (+)MAPPERmRatBN7.2
Rnor_6.01227,885,177 - 27,885,346NCBIRnor6.0
Rnor_5.01229,852,118 - 29,852,287UniSTSRnor5.0
RGSC_v3.41225,776,315 - 25,776,484UniSTSRGSC3.4
Celera1226,561,936 - 26,562,105UniSTS
RH 3.4 Map12422.8UniSTS
Cytogenetic Map12q12UniSTS
BE110558  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21225,183,753 - 25,183,933 (+)MAPPERmRatBN7.2
Rnor_6.01228,243,648 - 28,243,827NCBIRnor6.0
Rnor_5.01230,204,344 - 30,204,523UniSTSRnor5.0
RGSC_v3.41226,158,413 - 26,158,592UniSTSRGSC3.4
Celera1226,914,197 - 26,914,376UniSTS
RH 3.4 Map12434.4UniSTS
Cytogenetic Map12q12UniSTS
BE120626  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21225,132,054 - 25,132,212 (+)MAPPERmRatBN7.2
Rnor_6.01228,192,040 - 28,192,196NCBIRnor6.0
Rnor_5.01230,153,099 - 30,153,255UniSTSRnor5.0
RGSC_v3.41226,107,125 - 26,107,281UniSTSRGSC3.4
Celera1226,863,094 - 26,863,250UniSTS
RH 3.4 Map12434.9UniSTS
Cytogenetic Map12q12UniSTS
BE108318  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,953,472 - 24,953,663 (+)MAPPERmRatBN7.2
Rnor_6.01228,011,025 - 28,011,215NCBIRnor6.0
Rnor_5.01229,976,616 - 29,976,806UniSTSRnor5.0
RGSC_v3.41225,902,478 - 25,902,668UniSTSRGSC3.4
Celera1226,686,825 - 26,687,015UniSTS
RH 3.4 Map12423.9UniSTS
Cytogenetic Map12q12UniSTS
BE108855  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,181,300 - 24,181,463 (+)MAPPERmRatBN7.2
Rnor_6.01227,232,328 - 27,232,490NCBIRnor6.0
Rnor_5.01229,204,803 - 29,204,965UniSTSRnor5.0
RGSC_v3.41225,325,108 - 25,325,270UniSTSRGSC3.4
Celera1225,917,724 - 25,917,886UniSTS
RH 3.4 Map12423.5UniSTS
Cytogenetic Map12q12UniSTS
BF412251  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,785,161 - 24,785,277 (+)MAPPERmRatBN7.2
Rnor_6.01227,842,893 - 27,843,008NCBIRnor6.0
Rnor_5.01229,810,209 - 29,810,324UniSTSRnor5.0
RGSC_v3.41225,733,368 - 25,733,483UniSTSRGSC3.4
Celera1226,519,166 - 26,519,281UniSTS
RH 3.4 Map12404.0UniSTS
Cytogenetic Map12q12UniSTS
AU047595  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21225,122,409 - 25,122,520 (+)MAPPERmRatBN7.2
Rnor_6.01228,182,398 - 28,182,508NCBIRnor6.0
Rnor_5.01230,143,457 - 30,143,567UniSTSRnor5.0
RGSC_v3.41226,097,483 - 26,097,593UniSTSRGSC3.4
Celera1226,853,452 - 26,853,562UniSTS
RH140050  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,128,479 - 24,128,664 (+)MAPPERmRatBN7.2
Rnor_6.01227,179,526 - 27,179,710NCBIRnor6.0
Rnor_5.01229,153,308 - 29,153,492UniSTSRnor5.0
RGSC_v3.41225,377,728 - 25,377,912UniSTSRGSC3.4
Celera1225,865,220 - 25,865,404UniSTS
RH 3.4 Map12403.01UniSTS
Cytogenetic Map12q12UniSTS
RH141345  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21225,096,808 - 25,097,014 (+)MAPPERmRatBN7.2
Rnor_6.01228,157,153 - 28,157,358NCBIRnor6.0
Rnor_5.01230,118,288 - 30,118,493UniSTSRnor5.0
RGSC_v3.41226,071,846 - 26,072,051UniSTSRGSC3.4
Celera1226,828,197 - 26,828,402UniSTS
RH 3.4 Map12408.2UniSTS
Cytogenetic Map12q12UniSTS
BM387176  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera1225,893,592 - 25,893,773UniSTS
RH 3.4 Map5807.6UniSTS
Cytogenetic Map12q12UniSTS
BE114476  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21225,056,170 - 25,056,327 (+)MAPPERmRatBN7.2
Rnor_6.01228,116,443 - 28,116,599NCBIRnor6.0
Rnor_5.01230,077,918 - 30,078,074UniSTSRnor5.0
RGSC_v3.41226,007,268 - 26,007,424UniSTSRGSC3.4
Celera1226,789,070 - 26,789,226UniSTS
RH 3.4 Map12424.3UniSTS
Cytogenetic Map12q12UniSTS
AU048982  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,605,778 - 24,605,915 (+)MAPPERmRatBN7.2
Rnor_6.01227,658,801 - 27,658,937NCBIRnor6.0
Rnor_5.01229,628,553 - 29,628,689UniSTSRnor5.0
RGSC_v3.41225,549,878 - 25,550,014UniSTSRGSC3.4
Celera1226,339,973 - 26,340,099UniSTS
ha2178  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21224,388,160 - 24,389,026 (+)MAPPERmRatBN7.2
Rnor_6.01227,439,374 - 27,440,239NCBIRnor6.0
Rnor_5.01229,410,128 - 29,410,993UniSTSRnor5.0
Celera1226,124,084 - 26,124,949UniSTS
Cytogenetic Map12q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 17 2 2 2 66 14 25
Low 3 26 19 10 5 10 5 8 8 9 15 11 5
Below cutoff 34 27 13 27 2 2 12 1 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000001182   ⟹   ENSRNOP00000001182
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1225,099,800 - 25,192,866 (+)Ensembl
Rnor_6.0 Ensembl1228,212,333 - 28,251,816 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000044800   ⟹   ENSRNOP00000051554
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1224,576,354 - 24,594,037 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099151   ⟹   ENSRNOP00000091286
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1224,453,473 - 25,192,866 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099826   ⟹   ENSRNOP00000094782
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1225,187,451 - 25,194,416 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000118614   ⟹   ENSRNOP00000076894
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1224,104,192 - 25,192,866 (+)Ensembl
RefSeq Acc Id: NM_001107136   ⟹   NP_001100606
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81229,740,507 - 30,830,386 (+)NCBI
mRatBN7.21224,104,187 - 25,194,123 (+)NCBI
RefSeq Acc Id: XM_063271288   ⟹   XP_063127358
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81229,739,158 - 30,830,386 (+)NCBI
RefSeq Acc Id: XM_063271289   ⟹   XP_063127359
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81229,739,157 - 30,830,386 (+)NCBI
RefSeq Acc Id: XM_063271290   ⟹   XP_063127360
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81229,739,158 - 30,830,386 (+)NCBI
RefSeq Acc Id: XM_063271291   ⟹   XP_063127361
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81229,739,158 - 30,830,386 (+)NCBI
RefSeq Acc Id: XM_063271292   ⟹   XP_063127362
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81229,739,156 - 30,830,386 (+)NCBI
RefSeq Acc Id: XM_063271293   ⟹   XP_063127363
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81229,739,157 - 30,830,386 (+)NCBI
RefSeq Acc Id: XM_063271294   ⟹   XP_063127364
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81230,083,421 - 30,830,386 (+)NCBI
RefSeq Acc Id: XM_063271295   ⟹   XP_063127365
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81230,670,606 - 30,830,386 (+)NCBI
RefSeq Acc Id: XM_063271296   ⟹   XP_063127366
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81229,739,138 - 30,827,082 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000001182   ⟸   ENSRNOT00000001182
RefSeq Acc Id: ENSRNOP00000091286   ⟸   ENSRNOT00000099151
RefSeq Acc Id: ENSRNOP00000051554   ⟸   ENSRNOT00000044800
RefSeq Acc Id: ENSRNOP00000076894   ⟸   ENSRNOT00000118614
RefSeq Acc Id: ENSRNOP00000094782   ⟸   ENSRNOT00000099826
RefSeq Acc Id: NP_001100606   ⟸   NM_001107136
- UniProtKB: A0A8I6AFU9 (UniProtKB/TrEMBL),   A0A8I5Y6H6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127366   ⟸   XM_063271296
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063127362   ⟸   XM_063271292
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063127363   ⟸   XM_063271293
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063127359   ⟸   XM_063271289
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063127358   ⟸   XM_063271288
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063127361   ⟸   XM_063271291
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063127360   ⟸   XM_063271290
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063127364   ⟸   XM_063271294
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063127365   ⟸   XM_063271295
- Peptide Label: isoform X8

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M388-F1-model_v2 AlphaFold F1M388 1-1022 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2323959 AgrOrtholog
Ensembl Genes ENSRNOG00000000885 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000001182.6 UniProtKB/TrEMBL
  ENSRNOT00000044800.3 UniProtKB/TrEMBL
  ENSRNOT00000099151.1 UniProtKB/TrEMBL
  ENSRNOT00000099826.1 UniProtKB/TrEMBL
  ENSRNOT00000118614 ENTREZGENE
  ENSRNOT00000118614.1 UniProtKB/TrEMBL
InterPro AUTS2 UniProtKB/TrEMBL
NCBI Gene Auts2 ENTREZGENE
PANTHER AUTISM SUSCEPTIBILITY GENE 2 PROTEIN UniProtKB/TrEMBL
  PTHR14429 UniProtKB/TrEMBL
Pfam Auts2 UniProtKB/TrEMBL
PhenoGen Auts2 PhenoGen
PRINTS FIBROSIN1LPF UniProtKB/TrEMBL
RatGTEx ENSRNOG00000000885 RatGTEx
UniProt A0A8I5Y6H6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AFU9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ALS4_RAT UniProtKB/TrEMBL
  D3ZZY1_RAT UniProtKB/TrEMBL
  F1M388_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-03-25 Auts2  activator of transcription and developmental regulator AUTS2  Auts2l1  autism susceptibility candidate 2-like 1  Data merged from RGD:1309972 737654 PROVISIONAL
2019-03-26 Auts2  activator of transcription and developmental regulator AUTS2  Auts2  AUTS2, activator of transcription and developmental regulator  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2017-02-01 Auts2  AUTS2, activator of transcription and developmental regulator  Auts2  autism susceptibility candidate 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-09-16 Auts2  autism susceptibility candidate 2  LOC100362819  autism susceptibility candidate 2-like  Name and Symbol changed 629549 APPROVED
2013-09-16 Auts2l1  autism susceptibility candidate 2-like 1  Auts2  autism susceptibility candidate 2  Name and Symbol changed 629549 APPROVED
2010-05-06 LOC100362819  autism susceptibility candidate 2-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-04-20 Autsl  autism susceptibility candidate like  Auts2l  autism susceptibility candidate 2-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-13 Auts2l  autism susceptibility candidate 2-like  Auts2_predicted  autism susceptibility candidate 2 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Auts2_predicted  autism susceptibility candidate 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED