H3f3a (H3.3 histone A) - Rat Genome Database

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Gene: H3f3a (H3.3 histone A) Rattus norvegicus
Analyze
Symbol: H3f3a (Ensembl: H3f3b)
Name: H3.3 histone A (Ensembl:H3.3 histone B)
RGD ID: 2319910
Description: Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; RNA polymerase II core promoter sequence-specific DNA binding activity; and nucleosomal DNA binding activity. Predicted to be a structural constituent of chromatin. Predicted to be involved in nucleosome assembly; oocyte maturation; and positive regulation of cell growth. Predicted to act upstream of or within several processes, including constitutive heterochromatin formation; negative regulation of chromosome condensation; and osteoblast differentiation. Predicted to be located in Barr body; chromosome, telomeric region; and nucleoplasm. Predicted to be part of inner kinetochore and nucleosome. Predicted to be active in chromosome, centromeric region. Orthologous to human H3-3A (H3.3 histone A); PARTICIPATES IN histone modification pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; ammonium chloride; fipronil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: H3 histone family member 3A; H3 histone, family 3A; histone H3.3; histone H3.3A; histone H3.3B-like; LOC100361558
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81395,065,085 - 95,076,695 (-)NCBIGRCr8
mRatBN7.21392,533,289 - 92,544,902 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1392,533,298 - 92,544,908 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1395,038,631 - 95,050,244 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01396,438,557 - 96,450,171 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01393,613,252 - 93,624,861 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01399,091,246 - 99,102,828 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1399,091,763 - 99,101,208 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013104,089,831 - 104,101,413 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41396,539,599 - 96,551,198 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1392,078,421 - 92,090,028 (-)NCBICelera
Cytogenetic Map13q26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Every amino acid matters: essential contributions of histone variants to mammalian development and disease. Maze I, etal., Nat Rev Genet. 2014 Apr;15(4):259-71. doi: 10.1038/nrg3673. Epub 2014 Mar 11.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:12477932   PMID:14718166   PMID:15657431   PMID:19135898   PMID:19633671   PMID:20110566   PMID:20458337   PMID:21274551   PMID:21630459   PMID:21636898   PMID:22705305   PMID:23903189  
PMID:25615412   PMID:25675407   PMID:26159997   PMID:27482631  


Genomics

Comparative Map Data
H3f3a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81395,065,085 - 95,076,695 (-)NCBIGRCr8
mRatBN7.21392,533,289 - 92,544,902 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1392,533,298 - 92,544,908 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1395,038,631 - 95,050,244 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01396,438,557 - 96,450,171 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01393,613,252 - 93,624,861 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01399,091,246 - 99,102,828 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1399,091,763 - 99,101,208 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013104,089,831 - 104,101,413 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41396,539,599 - 96,551,198 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1392,078,421 - 92,090,028 (-)NCBICelera
Cytogenetic Map13q26NCBI
H3-3A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381226,061,831 - 226,072,019 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1226,061,851 - 226,072,019 (+)EnsemblGRCh38hg38GRCh38
GRCh371226,249,532 - 226,259,720 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361224,317,044 - 224,326,326 (+)NCBINCBI36Build 36hg18NCBI36
Build 341222,557,155 - 222,566,437NCBI
Celera1199,441,492 - 199,450,772 (+)NCBICelera
Cytogenetic Map1q42.12NCBI
HuRef1196,767,611 - 196,776,906 (+)NCBIHuRef
CHM1_11227,523,171 - 227,532,463 (+)NCBICHM1_1
T2T-CHM13v2.01225,249,743 - 225,259,926 (+)NCBIT2T-CHM13v2.0
H3f3a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391180,630,125 - 180,641,127 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1180,628,397 - 180,641,508 (-)EnsemblGRCm39 Ensembl
GRCm381180,802,560 - 180,813,605 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1180,800,832 - 180,813,943 (-)EnsemblGRCm38mm10GRCm38
MGSCv371182,732,699 - 182,743,734 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361182,639,243 - 182,650,278 (-)NCBIMGSCv36mm8
Celera1187,865,754 - 187,875,189 (-)NCBICelera
Cytogenetic Map1H4NCBI
cM Map184.46NCBI
H3f3a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955489269,900 - 278,398 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955489269,900 - 278,398 (+)NCBIChiLan1.0ChiLan1.0
LOC100970414
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2123,465,745 - 23,475,101 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1123,414,316 - 23,423,689 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01201,523,670 - 201,533,005 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11206,520,107 - 206,529,447 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1206,520,109 - 206,529,447 (+)Ensemblpanpan1.1panPan2
H3-3A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1738,797,168 - 38,805,417 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl738,797,448 - 38,805,416 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha738,277,490 - 38,285,800 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0738,630,568 - 38,638,918 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl738,630,568 - 38,638,856 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1738,469,231 - 38,477,538 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0738,475,684 - 38,485,703 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0738,747,035 - 38,755,357 (-)NCBIUU_Cfam_GSD_1.0
LOC101963041
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934451,904,969 - 51,912,269 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365262,835,002 - 2,842,328 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
H3-3A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1013,923,077 - 13,948,484 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11013,939,938 - 13,947,976 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21015,839,603 - 15,846,067 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103231004
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1253,696,153 - 3,704,886 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660553,710,525 - 3,719,740 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101699418
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624807194,372 - 203,205 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in H3f3a
37 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
1641901Alcrsp6Alcohol response QTL 6response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)135236217197362171Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1356056920101056920Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1361825626106807694Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1365103704106807694Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1365103704106807694Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137402391897213863Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1374862117101339893Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1380753256106807694Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 8 8 8 34 4 6
Medium 3 43 49 33 19 33 8 11 40 31 35 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001402225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001402226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_175010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003752684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC086580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC087725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC158615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC159439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000004329   ⟹   ENSRNOP00000004329
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1392,533,298 - 92,544,908 (-)Ensembl
Rnor_6.0 Ensembl1399,091,763 - 99,101,208 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000104118   ⟹   ENSRNOP00000094970
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1392,540,615 - 92,544,908 (-)Ensembl
RefSeq Acc Id: NM_001402225   ⟹   NP_001389154
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81395,065,085 - 95,076,695 (-)NCBI
mRatBN7.21392,533,289 - 92,544,902 (-)NCBI
RefSeq Acc Id: NM_001402226   ⟹   NP_001389155
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81395,065,085 - 95,076,695 (-)NCBI
mRatBN7.21392,533,289 - 92,544,902 (-)NCBI
RefSeq Acc Id: NR_175010
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81395,065,085 - 95,076,695 (-)NCBI
mRatBN7.21392,533,289 - 92,544,902 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001389154 (Get FASTA)   NCBI Sequence Viewer  
  NP_001389155 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH86580 (Get FASTA)   NCBI Sequence Viewer  
  AAH87725 (Get FASTA)   NCBI Sequence Viewer  
  AAI58616 (Get FASTA)   NCBI Sequence Viewer  
  AAI59440 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000004329
  ENSRNOP00000094970.1
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000004329   ⟸   ENSRNOT00000004329
RefSeq Acc Id: ENSRNOP00000094970   ⟸   ENSRNOT00000104118
RefSeq Acc Id: NP_001389155   ⟸   NM_001402226
- UniProtKB: Q5RJM5 (UniProtKB/Swiss-Prot),   P84245 (UniProtKB/Swiss-Prot),   B0BMY8 (UniProtKB/TrEMBL),   A6HKT3 (UniProtKB/TrEMBL),   A6JGH8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001389154   ⟸   NM_001402225
- UniProtKB: Q5RJM5 (UniProtKB/Swiss-Prot),   P84245 (UniProtKB/Swiss-Prot),   B0BMY8 (UniProtKB/TrEMBL),   A6HKT3 (UniProtKB/TrEMBL),   A6JGH8 (UniProtKB/TrEMBL)
Protein Domains
Histone H2A/H2B/H3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P84245-F1-model_v2 AlphaFold P84245 1-136 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2319910 AgrOrtholog
BioCyc Gene G2FUF-17112 BioCyc
Ensembl Genes ENSRNOG00000003220 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000004329 ENTREZGENE
  ENSRNOT00000104118.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/TrEMBL
InterPro Histone-fold UniProtKB/TrEMBL
  Histone_H2A/H2B/H3 UniProtKB/TrEMBL
  Histone_H3/CENP-A UniProtKB/TrEMBL
NCBI Gene 100361558 ENTREZGENE
PANTHER HISTONE H3-7 UniProtKB/TrEMBL
  PTHR11426 UniProtKB/TrEMBL
Pfam Histone UniProtKB/TrEMBL
PhenoGen H3f3a PhenoGen
PRINTS HISTONEH3 UniProtKB/TrEMBL
PROSITE HISTONE_H3_1 UniProtKB/TrEMBL
  HISTONE_H3_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000003220 RatGTEx
SMART SM00428 UniProtKB/TrEMBL
Superfamily-SCOP SSF47113 UniProtKB/TrEMBL
UniProt A0A8I6AKL6_RAT UniProtKB/TrEMBL
  A6HKT3 ENTREZGENE
  A6JGH8 ENTREZGENE
  B0BMY8 ENTREZGENE
  P84245 ENTREZGENE
  Q5RJM5 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-10-27 H3f3a  H3.3 histone A  H3f3a  H3 histone family member 3A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-08-18 H3f3a  H3 histone family member 3A  H3f3a  H3 histone, family 3A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-02 H3f3a  H3 histone, family 3A  LOC100361558  histone H3.3B-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-05 LOC100361558  histone H3.3B-like      Symbol and Name status set to provisional 70820 PROVISIONAL