Ncaph (non-SMC condensin I complex, subunit H)

Gene: Ncaph (non-SMC condensin I complex, subunit H) Rattus norvegicus

Analyze

Symbol:

Ncaph

Name:

non-SMC condensin I complex, subunit H

RGD ID:

1596799

Description:

Predicted to enable chromatin binding activity. Predicted to be involved in nuclear chromosome segregation; positive regulation of chromosome condensation; and regulation of chromosome segregation. Predicted to act upstream of or within meiotic chromosome condensation and meiotic chromosome segregation. Predicted to be located in condensed nuclear chromosome; cytosol; and nucleoplasm. Predicted to be part of condensin complex. Predicted to be active in chromosome and nucleus. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly. Orthologous to human NCAPH (non-SMC condensin I complex subunit H); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

condensin complex subunit 2; LOC680089; similar to Condensin complex subunit 2 (Barren homolog protein 1) (Chromosome-associated protein H) (mCAP-H) (XCAP-H homolog)

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NCAPH (non-SMC condensin I complex subunit H)	HGNC	EggNOG, Ensembl, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Ncaph (non-SMC condensin I complex, subunit H)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ncaph (non-SMC condensin I complex subunit H)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NCAPH (non-SMC condensin I complex subunit H)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NCAPH (non-SMC condensin I complex subunit H)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ncaph (non-SMC condensin I complex subunit H)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NCAPH (non-SMC condensin I complex subunit H)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NCAPH (non-SMC condensin I complex subunit H)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ncaph (non-SMC condensin I complex subunit H)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	NCAPH (non-SMC condensin I complex subunit H)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ncaph (non-SMC condensin I complex, subunit H)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ncaph (non-SMC condensin I complex, subunit H)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	BRN1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	barr	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ncaph	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	134,825,271 - 134,852,502 (-)	NCBI		GRCr8
mRatBN7.2	3	114,371,937 - 114,399,178 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	114,371,941 - 114,399,180 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	118,263,906 - 118,290,791 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	126,859,455 - 126,886,339 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	124,519,832 - 124,546,720 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	119,583,798 - 119,611,148 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	119,583,648 - 119,611,136 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	126,108,995 - 126,136,392 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	114,651,251 - 114,679,447 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	113,212,390 - 113,239,664 (-)	NCBI		Celera
Cytogenetic Map	3	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

genetic disease (ISO)

hepatocellular carcinoma (ISO)

intellectual disability (ISO)

lung non-small cell carcinoma (ISO)

Primary Autosomal Recessive Microcephaly 23 (ISO)

schizophrenia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-palmitoylglycerol (ISO)

3-methylcholanthrene (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP,ISO)

afimoxifene (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

antimycin A (ISO)

Aroclor 1254 (ISO)

arsenous acid (ISO)

azathioprine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP,ISO)

caffeine (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

choline (ISO)

chrysene (ISO)

cisplatin (ISO)

clozapine (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

coumestrol (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

deguelin (ISO)

diallyl trisulfide (ISO)

diarsenic trioxide (ISO)

dibenz[a,h]anthracene (ISO)

diethyl maleate (EXP)

dioxygen (EXP,ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

erythromycin estolate (EXP)

ethyl methanesulfonate (ISO)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

fulvestrant (ISO)

furan (EXP)

geraniol (ISO)

haloperidol (ISO)

ivermectin (ISO)

L-methionine (ISO)

lead(0) (ISO)

leflunomide (EXP)

lidocaine (EXP)

lucanthone (ISO)

menadione (ISO)

methimazole (EXP)

methotrexate (ISO)

methyl methanesulfonate (ISO)

monosodium L-glutamate (ISO)

N-methyl-4-phenylpyridinium (ISO)

N-nitrosodiethylamine (ISO)

N-Nitrosopyrrolidine (ISO)

orphenadrine (EXP)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

PCB138 (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

phenethyl isothiocyanate (ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

phytoestrogen (ISO)

picoxystrobin (ISO)

pirinixic acid (ISO)

piroxicam (ISO)

potassium chromate (ISO)

pregnenolone 16alpha-carbonitrile (EXP)

pyrimidifen (ISO)

raloxifene (ISO)

resveratrol (ISO)

rotenone (EXP,ISO)

SB 431542 (ISO)

senecionine (EXP)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

testosterone (ISO)

tetrachloromethane (ISO)

tetrahydropalmatine (ISO)

tetraphene (ISO)

thioacetamide (EXP)

titanium dioxide (EXP,ISO)

topotecan (EXP,ISO)

triclosan (ISO)

trimellitic anhydride (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

vincaleukoblastine (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell division (IEA)

female meiosis chromosome separation (ISO)

female meiotic nuclear division (ISO)

meiotic chromosome condensation (ISO)

meiotic chromosome segregation (ISO)

mitotic chromosome condensation (IBA,ISO)

positive regulation of chromosome condensation (ISO)

positive regulation of chromosome segregation (ISO)

positive regulation of chromosome separation (ISO)

Cellular Component

chromosome (ISO)

condensed nuclear chromosome (ISO)

condensin complex (IBA,ISO)

cytoplasm (IEA)

cytosol (ISO)

nucleoplasm (ISO)

nucleus (ISO)

Molecular Function

chromatin binding (IBA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	NCAPH is negatively associated with Mcl‑1 in non‑small cell lung cancer.	Xiong Q, etal., Mol Med Rep. 2020 Oct;22(4):2916-2924. doi: 10.3892/mmr.2020.11359. Epub 2020 Jul 28.

Additional References at PubMed

PMID:11136719	PMID:11694586	PMID:12477932	PMID:19946888	PMID:21795393	PMID:23531880	PMID:25474630	PMID:25961503	PMID:27737959

Genomics

Comparative Map Data

Ncaph
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	134,825,271 - 134,852,502 (-)	NCBI		GRCr8
mRatBN7.2	3	114,371,937 - 114,399,178 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	114,371,941 - 114,399,180 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	118,263,906 - 118,290,791 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	126,859,455 - 126,886,339 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	124,519,832 - 124,546,720 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	119,583,798 - 119,611,148 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	119,583,648 - 119,611,136 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	126,108,995 - 126,136,392 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	114,651,251 - 114,679,447 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	113,212,390 - 113,239,664 (-)	NCBI		Celera
Cytogenetic Map	3	q36	NCBI

NCAPH
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	96,335,766 - 96,377,091 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	96,335,766 - 96,377,091 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	97,001,504 - 97,042,829 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	96,365,211 - 96,405,001 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	96,423,364 - 96,461,456	NCBI
Celera	2	91,442,671 - 91,482,461 (+)	NCBI		Celera
Cytogenetic Map	2	q11.2	NCBI
HuRef	2	90,962,712 - 91,004,067 (+)	NCBI		HuRef
CHM1_1	2	97,005,816 - 97,047,166 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	96,842,375 - 96,883,701 (+)	NCBI		T2T-CHM13v2.0

Ncaph
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	126,945,729 - 126,975,857 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	126,945,729 - 126,975,874 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	127,103,809 - 127,133,954 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	127,103,809 - 127,133,954 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	126,929,545 - 126,959,690 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	126,795,270 - 126,825,346 (-)	NCBI		MGSCv36	mm8
Celera	2	128,333,925 - 128,367,247 (-)	NCBI		Celera
Cytogenetic Map	2	F1	NCBI
cM Map	2	61.76	NCBI

Ncaph
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955470	3,878,883 - 3,909,146 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955470	3,878,896 - 3,909,087 (+)	NCBI	ChiLan1.0	ChiLan1.0

NCAPH
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	31,932,502 - 31,973,179 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	31,931,343 - 31,975,997 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	102,939,357 - 102,980,091 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	97,258,412 - 97,299,912 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	97,258,412 - 97,299,906 (+)	Ensembl	panpan1.1		panPan2

NCAPH
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	34,428,886 - 34,463,140 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	34,420,060 - 34,462,666 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	34,199,697 - 34,233,619 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	35,190,883 - 35,234,717 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	35,199,736 - 35,234,715 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	34,324,093 - 34,363,755 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	34,377,182 - 34,422,599 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	34,595,536 - 34,638,901 (+)	NCBI		UU_Cfam_GSD_1.0

Ncaph
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	83,172,516 - 83,216,031 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936744	440,956 - 468,972 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936744	440,958 - 468,964 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NCAPH
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	46,852,392 - 46,893,013 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	46,852,388 - 46,893,008 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	48,999,151 - 49,092,637 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NCAPH
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	755,840 - 792,053 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	755,897 - 792,154 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	168,182,504 - 168,218,685 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ncaph
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624749	2,411,970 - 2,444,446 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624749	2,411,952 - 2,439,981 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ncaph
172 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	50
Count of miRNA genes:	46
Interacting mature miRNAs:	50
Transcripts:	ENSRNOT00000016157
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	29463235	118376539	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	38192233	133483320	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	41874578	155617519	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	41874578	155617519	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	43827364	121056321	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	47233211	147415807	Rat
631665	Bw8	Body weight QTL 8	5.5		body mass (VT:0001259)	body weight (CMO:0000012)	3	50437042	119183768	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	50437504	115638231	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	53184593	115665732	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	53184593	115665732	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	53184593	115665732	Rat
1581568	Rf53	Renal function QTL 53			urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	56395968	161299569	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	59242096	157323038	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	61017749	121056321	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	64655305	115665732	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	64655305	115665732	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	70348525	121056321	Rat
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	70653097	121056321	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	73376539	118376539	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	78196190	146592722	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	89772419	134772419	Rat
8694437	Bw167	Body weight QTL 167	22.46	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	3	91797474	136797474	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	94856903	159898684	Rat
724532	Cm17	Cardiac mass QTL 17	2		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	3	95735366	140735366	Rat
1582219	Bw63	Body weight QTL 63	3.8	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	3	96127817	115665732	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	97084464	142084464	Rat
2293087	Iddm27	Insulin dependent diabetes mellitus QTL 27	2.68		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	97551417	147415807	Rat
2312659	Slep7	Serum leptin concentration QTL 7		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	3	98535255	168026850	Rat
2312670	Bw94	Body weight QTL 94		0.01	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	3	98535255	168026850	Rat
2312673	Scl63	Serum cholesterol level QTL 63		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	98535255	168026850	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	98535386	161695835	Rat
1582216	Bw65	Body weight QTL 65	6.3		body mass (VT:0001259)	body weight (CMO:0000012)	3	102200529	115665732	Rat
619618	Rf3	Renal disease susceptibility QTL 3	6.5	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate to body weight ratio (CMO:0001270)	3	107693393	152693393	Rat
1331758	Bp207	Blood pressure QTL 207	2.848		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	112287552	135181505	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	112681431	157681431	Rat

Markers in Region

RH132580

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	114,372,098 - 114,372,300 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	119,583,962 - 119,584,163	NCBI	Rnor6.0
Rnor_5.0	3	126,109,159 - 126,109,360	UniSTS	Rnor5.0
RGSC_v3.4	3	114,651,413 - 114,651,614	UniSTS	RGSC3.4
Celera	3	113,212,554 - 113,212,755	UniSTS
RH 3.4 Map	3	998.2	UniSTS
Cytogenetic Map	3	q36	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	26	29	22	15	22			43	21	36
Low		14	22	13	4	13	4	6	28	14	5	11	4
Below cutoff		3	6	6		6	4	5	3				4

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001402050	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_056985377	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284540	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_085785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_591653	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_600327	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC158741	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000016157 ⟹ ENSRNOP00000016157

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	114,371,941 - 114,399,180 (-)	Ensembl
Rnor_6.0 Ensembl	3	119,583,648 - 119,611,136 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000094988 ⟹ ENSRNOP00000083211

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	114,371,941 - 114,393,916 (-)	Ensembl

RefSeq Acc Id:

NM_001402050 ⟹ NP_001388979

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	134,825,271 - 134,852,502 (-)	NCBI
mRatBN7.2	3	114,371,937 - 114,399,178 (-)	NCBI

RefSeq Acc Id:

XM_056985377 ⟹ XP_056841357

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	134,825,271 - 134,851,993 (-)	NCBI
mRatBN7.2	3	114,371,954 - 114,398,876 (-)	NCBI

RefSeq Acc Id:

XM_063284540 ⟹ XP_063140610

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	134,825,271 - 134,852,259 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001388979	(Get FASTA)	NCBI Sequence Viewer
	XP_056841357	(Get FASTA)	NCBI Sequence Viewer
	XP_063140610	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000016157
	ENSRNOP00000016157.7
	ENSRNOP00000083211.1

RefSeq Acc Id:

ENSRNOP00000016157 ⟸ ENSRNOT00000016157

RefSeq Acc Id:

ENSRNOP00000083211 ⟸ ENSRNOT00000094988

RefSeq Acc Id:	NP_001388979 ⟸ NM_001402050
- UniProtKB:	D4A8M7 (UniProtKB/TrEMBL), A6HQ00 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_056841357 ⟸ XM_056985377
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063140610 ⟸ XM_063284540
- Peptide Label:	isoform X1

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A8M7-F1-model_v2	AlphaFold	D4A8M7	1-732	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692410

Promoter ID:

EPDNEW_R2921

Type:

initiation region

Name:

Ncaph_1

Description:

non-SMC condensin I complex, subunit H

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	119,611,113 - 119,611,173	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1596799	AgrOrtholog
BioCyc Gene	G2FUF-48008	BioCyc
Ensembl Genes	ENSRNOG00000012051	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000016157	ENTREZGENE
	ENSRNOT00000016157.8	UniProtKB/TrEMBL
	ENSRNOT00000094988.1	UniProtKB/TrEMBL
InterPro	Condensin_barren_su2	UniProtKB/TrEMBL
NCBI Gene	680089	ENTREZGENE
PANTHER	CONDENSIN COMPLEX SUBUNIT 2	UniProtKB/TrEMBL
	PTHR13108	UniProtKB/TrEMBL
Pfam	Barren	UniProtKB/TrEMBL
PhenoGen	Ncaph	PhenoGen
PIRSF	Condensin_H	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000012051	RatGTEx
UniProt	A0A8I5ZVL6_RAT	UniProtKB/TrEMBL
	A6HQ00	ENTREZGENE, UniProtKB/TrEMBL
	D4A8M7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-05	Ncaph	non-SMC condensin I complex, subunit H	LOC680089	similar to Condensin complex subunit 2 (Barren homolog protein 1) (Chromosome-associated protein H) (mCAP-H) (XCAP-H homolog)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-01-09	LOC680089	similar to Condensin complex subunit 2 (Barren homolog protein 1) (Chromosome-associated protein H) (mCAP-H) (XCAP-H homolog)	LOC688088	similar to Condensin complex subunit 2 (Barren homolog protein 1) (Chromosome-associated protein H) (mCAP-H) (XCAP-H homolog)	Data merged from RGD:1593575	1643240	APPROVED
2006-11-20	LOC680089	similar to Condensin complex subunit 2 (Barren homolog protein 1) (Chromosome-associated protein H) (mCAP-H) (XCAP-H homolog)			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-20	LOC688088	similar to Condensin complex subunit 2 (Barren homolog protein 1) (Chromosome-associated protein H) (mCAP-H) (XCAP-H homolog)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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