Eri3 (ERI1 exoribonuclease family member 3) - Rat Genome Database

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Gene: Eri3 (ERI1 exoribonuclease family member 3) Rattus norvegicus
Analyze
Symbol: Eri3
Name: ERI1 exoribonuclease family member 3
RGD ID: 1595859
Description: Predicted to enable 3'-5'-RNA exonuclease activity. Predicted to be involved in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Orthologous to human ERI3 (ERI1 exoribonuclease family member 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ERI1 exoribonuclease 3; exoribonuclease 3; hypothetical protein LOC100361570; LOC100361570; LOC313535; prion protein interacting protein 1; Prnpip1; similar to prion protein interacting protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85136,252,691 - 136,379,832 (+)NCBIGRCr8
mRatBN7.25131,016,146 - 131,143,347 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5131,016,126 - 131,143,329 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.05136,406,009 - 136,533,408 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5136,406,130 - 136,533,389 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05140,195,463 - 140,322,831 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45137,817,876 - 137,884,233 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5129,534,399 - 129,661,724 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:12477932   PMID:22658674   PMID:22681889  


Genomics

Comparative Map Data
Eri3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85136,252,691 - 136,379,832 (+)NCBIGRCr8
mRatBN7.25131,016,146 - 131,143,347 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5131,016,126 - 131,143,329 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.05136,406,009 - 136,533,408 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5136,406,130 - 136,533,389 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05140,195,463 - 140,322,831 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45137,817,876 - 137,884,233 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5129,534,399 - 129,661,724 (+)NCBICelera
Cytogenetic Map5q36NCBI
ERI3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38144,221,070 - 44,355,279 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl144,221,070 - 44,355,260 (-)EnsemblGRCh38hg38GRCh38
GRCh37144,686,742 - 44,820,951 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36144,459,329 - 44,593,526 (-)NCBINCBI36Build 36hg18NCBI36
Build 34144,355,858 - 44,454,465NCBI
Celera142,970,065 - 43,104,133 (-)NCBICelera
Cytogenetic Map1p34.1NCBI
HuRef142,800,584 - 42,934,353 (-)NCBIHuRef
CHM1_1144,802,262 - 44,936,427 (-)NCBICHM1_1
T2T-CHM13v2.0144,091,960 - 44,226,198 (-)NCBIT2T-CHM13v2.0
Eri3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394117,407,416 - 117,531,494 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4117,407,562 - 117,531,494 (+)EnsemblGRCm39 Ensembl
GRCm384117,550,241 - 117,674,297 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4117,550,365 - 117,674,297 (+)EnsemblGRCm38mm10GRCm38
MGSCv374117,223,099 - 117,346,886 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364117,048,426 - 117,172,215 (+)NCBIMGSCv36mm8
Celera4116,282,171 - 116,405,801 (+)NCBICelera
Cytogenetic Map4D1NCBI
cM Map453.46NCBI
Eri3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546413,855,154 - 13,984,598 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546413,855,581 - 13,984,598 (+)NCBIChiLan1.0ChiLan1.0
ERI3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21182,453,069 - 182,586,861 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11181,594,422 - 181,728,221 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0143,524,620 - 43,658,121 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1144,894,011 - 45,027,265 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl144,894,011 - 45,027,194 (-)Ensemblpanpan1.1panPan2
ERI3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11515,948,986 - 16,076,804 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1515,948,932 - 16,076,529 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1516,070,667 - 16,198,551 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01516,102,052 - 16,230,026 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1516,101,981 - 16,230,026 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11515,901,987 - 16,029,916 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01515,969,839 - 16,097,974 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01516,043,011 - 16,171,083 (+)NCBIUU_Cfam_GSD_1.0
Eri3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505859,671,563 - 59,804,373 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647425,492,021 - 25,629,125 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647425,496,344 - 25,629,107 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ERI3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6166,957,316 - 167,082,631 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16166,957,241 - 167,082,631 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26154,509,047 - 154,568,072 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ERI3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12088,435,067 - 88,569,866 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2088,435,047 - 88,570,458 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603328,352,666 - 28,487,948 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Eri3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624906117,917 - 258,003 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624906117,917 - 257,602 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Eri3
556 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:352
Count of miRNA genes:208
Interacting mature miRNAs:250
Transcripts:ENSRNOT00000026222, ENSRNOT00000072492
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555805606132207589Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)559793399143070159Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
7411601Foco12Food consumption QTL 1219.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
7411564Bw135Body weight QTL 1350.001body mass (VT:0001259)body weight gain (CMO:0000420)587468046132468046Rat
7411582Foco3Food consumption QTL 37.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
6903316Bw113Body weight QTL 11320.0103body mass (VT:0001259)body weight (CMO:0000012)587765973132765973Rat
631527Tls1T-lymphoma susceptibility QTL 100.001thymus integrity trait (VT:0010555)post-insult time to onset of T-cell lymphoma (CMO:0001907)590450144135450144Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)594858972143070159Rat
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)597059760147465714Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)597570330136479578Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)599216724148607142Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)5103689353148689353Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5105999803150999803Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5106906205151906205Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5106906205151906205Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5106906205151906205Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5106906205151906205Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5106906205151906205Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5108845856153845856Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5108845856153845856Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)5108938288153938288Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5111416838156416838Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5111416838156416838Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5111416838156416838Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5120740824143608494Rat
2293642Bss37Bone structure and strength QTL 374.640.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5120740824151018848Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
7394710Emca12Estrogen-induced mammary cancer QTL 12mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5124160767133749643Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
1300122Wbc1White blood cell count QTL 12.75leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)5125392826139989768Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
1581505Rf54Renal function QTL 54kidney physiology trait (VT:0002136)kidney 20-HETE level (CMO:0001854)5128033842133011550Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
1331803Rf32Renal function QTL 322.798kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)5129132428143070159Rat
70156Niddm30Non-insulin dependent diabetes mellitus QTL 303.98blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)5129132447151006154Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat

Markers in Region
BF386418  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25131,121,135 - 131,121,346 (+)MAPPERmRatBN7.2
Rnor_6.05136,511,229 - 136,511,437NCBIRnor6.0
Rnor_5.05140,300,793 - 140,301,001UniSTSRnor5.0
Celera5129,639,411 - 129,639,619UniSTS
RH 3.4 Map5859.2UniSTS
Cytogenetic Map5q36UniSTS
BE120322  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25131,139,870 - 131,140,055 (+)MAPPERmRatBN7.2
Rnor_6.05136,529,932 - 136,530,116NCBIRnor6.0
Rnor_5.05140,319,355 - 140,319,539UniSTSRnor5.0
RGSC_v3.45137,993,789 - 137,993,973UniSTSRGSC3.4
Celera5129,658,248 - 129,658,432UniSTS
RH 3.4 Map5855.3UniSTS
Cytogenetic Map5q36UniSTS
RH128205  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25131,142,912 - 131,143,092 (+)MAPPERmRatBN7.2
Rnor_6.05136,532,974 - 136,533,153NCBIRnor6.0
Rnor_5.05140,322,397 - 140,322,576UniSTSRnor5.0
RGSC_v3.45137,996,831 - 137,997,010UniSTSRGSC3.4
Celera5129,661,290 - 129,661,469UniSTS
RH 3.4 Map5853.6UniSTS
Cytogenetic Map5q36UniSTS
AU048097  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25131,081,556 - 131,081,780 (+)MAPPERmRatBN7.2
Rnor_6.05136,471,852 - 136,472,075NCBIRnor6.0
Rnor_5.05140,261,400 - 140,261,623UniSTSRnor5.0
Celera5129,599,922 - 129,600,145UniSTS
Cytogenetic Map5q36UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_001071982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC099220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC167080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK840960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000072492   ⟹   ENSRNOP00000065721
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5131,016,137 - 131,121,069 (+)Ensembl
Rnor_6.0 Ensembl5136,406,308 - 136,532,929 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000092863
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl5136,420,411 - 136,444,228 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000092886
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl5136,408,498 - 136,533,389 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093099   ⟹   ENSRNOP00000075989
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5131,016,126 - 131,143,329 (+)Ensembl
Rnor_6.0 Ensembl5136,406,130 - 136,533,071 (+)Ensembl
RefSeq Acc Id: NM_001427171   ⟹   NP_001414100
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85136,252,691 - 136,379,832 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001414100 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI67080 (Get FASTA)   NCBI Sequence Viewer  
  EDL90213 (Get FASTA)   NCBI Sequence Viewer  
  EDL90214 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000065721.2
  ENSRNOP00000075989.2
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000065721   ⟸   ENSRNOT00000072492
RefSeq Acc Id: ENSRNOP00000075989   ⟸   ENSRNOT00000093099
RefSeq Acc Id: NP_001414100   ⟸   NM_001427171
- UniProtKB: A6JZD9 (UniProtKB/TrEMBL),   B2RZA2 (UniProtKB/TrEMBL)
Protein Domains
Exonuclease

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R8C5-F1-model_v2 AlphaFold M0R8C5 1-337 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693955
Promoter ID:EPDNEW_R4477
Type:initiation region
Name:Eri3_2
Description:ERI1 exoribonuclease family member 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R4478  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05136,406,085 - 136,406,145EPDNEW
RGD ID:13693958
Promoter ID:EPDNEW_R4478
Type:single initiation site
Name:Eri3_1
Description:ERI1 exoribonuclease family member 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R4477  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05136,408,492 - 136,408,552EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1595859 AgrOrtholog
BioCyc Gene G2FUF-40194 BioCyc
Ensembl Genes ENSRNOG00000019381 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000072492.4 UniProtKB/TrEMBL
  ENSRNOT00000093099.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.420.10 UniProtKB/TrEMBL
InterPro ERI-1_3'hExo-like UniProtKB/TrEMBL
  Exonuclease_RNaseT/DNA_pol3 UniProtKB/TrEMBL
  RNaseH-like_dom UniProtKB/TrEMBL
  RNaseH_sf UniProtKB/TrEMBL
KEGG Report rno:313535 UniProtKB/TrEMBL
NCBI Gene 313535 ENTREZGENE
PANTHER 3'-5' EXONUCLEASE ERI1-RELATED UniProtKB/TrEMBL
  ERI1 EXORIBONUCLEASE 3 UniProtKB/TrEMBL
Pfam RNase_T UniProtKB/TrEMBL
PhenoGen Eri3 PhenoGen
RatGTEx ENSRNOG00000019381 RatGTEx
SMART EXOIII UniProtKB/TrEMBL
Superfamily-SCOP RNaseH_fold UniProtKB/TrEMBL
UniProt A0A1B0GWR1_RAT UniProtKB/TrEMBL
  A6JZD9 ENTREZGENE, UniProtKB/TrEMBL
  B2RZA2 ENTREZGENE, UniProtKB/TrEMBL
  M0R8C5_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-29 Eri3  ERI1 exoribonuclease family member 3  LOC100361570  hypothetical protein LOC100361570  Data merged from RGD:2319898 737654 PROVISIONAL
2011-08-02 Eri3  ERI1 exoribonuclease family member 3  Eri3  exoribonuclease 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-05 LOC100361570  hypothetical protein LOC100361570      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-01-14 Eri3  exoribonuclease 3  Prnpip1  prion protein interacting protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 Prnpip1  prion protein interacting protein 1  LOC313535  similar to prion protein interacting protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC313535  similar to prion protein interacting protein 1      Symbol and Name status set to provisional 70820 PROVISIONAL