Rab20 (RAB20, member RAS oncogene family)

Gene: Rab20 (RAB20, member RAS oncogene family) Rattus norvegicus

Analyze

Symbol:

Rab20

Name:

RAB20, member RAS oncogene family

RGD ID:

1593487

Description:

Predicted to enable GTPase activity. Predicted to be involved in intracellular protein transport; phagosome acidification; and phagosome-lysosome fusion. Predicted to act upstream of or within cellular response to type II interferon. Predicted to be located in Golgi apparatus and phagocytic vesicle. Predicted to be active in endomembrane system. Orthologous to human RAB20 (RAB20, member RAS oncogene family); INTERACTS WITH 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine; 4-(ethoxymethylene)-2-phenyloxazol-5-one.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC689377; ras-related protein Rab-20; similar to Ras-related protein Rab-20

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RAB20 (RAB20, member RAS oncogene family)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Rab20 (RAB20, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rab20 (RAB20, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RAB20 (RAB20, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RAB20 (RAB20, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rab20 (RAB20, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RAB20 (RAB20, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RAB20 (RAB20, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rab20 (RAB20, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	C1D (C1D nuclear receptor corepressor)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	RAB20 (RAB20, member RAS oncogene family)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rab20 (RAB20, member RAS oncogene family)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rab20 (RAB20, member RAS oncogene family)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rab20	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	84,721,427 - 84,745,610 (+)	NCBI		GRCr8
mRatBN7.2	16	78,019,337 - 78,043,529 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	78,019,337 - 78,043,529 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	83,299,781 - 83,323,965 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	86,752,438 - 86,776,630 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	81,994,065 - 82,018,501 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	83,358,116 - 83,382,326 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	83,358,116 - 83,382,326 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	82,824,911 - 82,848,168 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	82,871,002 - 82,895,146 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	16	75,818,103 - 75,841,942 (+)	NCBI		Celera
Cytogenetic Map	16	q12.5	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Anal Atresia, Hypospadias, and Penoscrotal Inversion (ISO)

COVID-19 (ISO)

factor X deficiency (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

1,3-dinitrobenzene (EXP)

1-nitropyrene (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-butoxyethanol (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

4-(ethoxymethylene)-2-phenyloxazol-5-one (EXP)

4-\{[(5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)carbonyl]amino\}benzoic acid (ISO)

4-hydroxyphenyl retinamide (ISO)

5-fluorouracil (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

dibutyl phthalate (EXP)

diethylstilbestrol (ISO)

dioxygen (ISO)

diuron (EXP)

dorsomorphin (ISO)

entinostat (ISO)

ethyl methanesulfonate (ISO)

etoposide (ISO)

fluoranthene (ISO)

formaldehyde (ISO)

fulvestrant (ISO)

furan (EXP)

gentamycin (EXP)

glycidyl methacrylate (ISO)

iron dichloride (ISO)

manganese(II) chloride (EXP)

mercury dibromide (ISO)

methapyrilene (EXP)

methotrexate (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

mitomycin C (ISO)

mono(2-ethylhexyl) phthalate (EXP)

nickel atom (ISO)

oxaliplatin (EXP)

ozone (ISO)

p-chloromercuribenzoic acid (ISO)

panobinostat (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

quercetin (ISO)

resveratrol (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sulforaphane (ISO)

sunitinib (ISO)

T-2 toxin (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP,ISO)

trichloroethene (EXP)

trichostatin A (ISO)

trimellitic anhydride (EXP)

valproic acid (ISO)

vincristine (ISO)

vorinostat (ISO)

zearalenone (ISO)

zinc dichloride (ISO)

zinc sulfate (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to type II interferon (ISO)

intracellular protein transport (IBA)

phagosome acidification (ISO)

phagosome-lysosome fusion (ISO)

Cellular Component

endomembrane system (IBA)

Golgi apparatus (IEA,ISO)

intracellular membrane-bounded organelle (ISO)

phagocytic vesicle (ISO)

Molecular Function

GTP binding (IEA)

GTPase activity (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:19144319	PMID:21255211	PMID:29107708

Genomics

Comparative Map Data

Rab20
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	84,721,427 - 84,745,610 (+)	NCBI		GRCr8
mRatBN7.2	16	78,019,337 - 78,043,529 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	78,019,337 - 78,043,529 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	83,299,781 - 83,323,965 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	86,752,438 - 86,776,630 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	81,994,065 - 82,018,501 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	83,358,116 - 83,382,326 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	83,358,116 - 83,382,326 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	82,824,911 - 82,848,168 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	82,871,002 - 82,895,146 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	16	75,818,103 - 75,841,942 (+)	NCBI		Celera
Cytogenetic Map	16	q12.5	NCBI

RAB20
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	110,523,066 - 110,561,722 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	110,523,066 - 110,561,722 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	13	111,175,413 - 111,214,069 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	109,973,414 - 110,012,072 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	13	109,973,414 - 110,012,072	NCBI
Celera	13	92,021,471 - 92,060,129 (-)	NCBI		Celera
Cytogenetic Map	13	q34	NCBI
HuRef	13	91,774,840 - 91,813,429 (-)	NCBI		HuRef
CHM1_1	13	111,143,261 - 111,182,508 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	13	109,753,501 - 109,792,327 (-)	NCBI		T2T-CHM13v2.0

Rab20
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	11,503,390 - 11,528,640 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	11,503,518 - 11,528,710 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	11,453,390 - 11,478,640 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	11,453,518 - 11,478,710 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	11,453,977 - 11,478,499 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	11,453,949 - 11,478,471 (-)	NCBI		MGSCv36	mm8
Celera	8	11,628,822 - 11,653,857 (-)	NCBI		Celera
Cytogenetic Map	8	A1.1	NCBI
cM Map	8	5.73	NCBI

Rab20
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955404	2,087,580 - 2,088,545 (+)	NCBI	ChiLan1.0	ChiLan1.0

RAB20
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	112,019,815 - 112,057,904 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	110,703,541 - 110,741,624 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	91,660,142 - 91,698,215 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	110,778,119 - 110,815,408 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	110,778,119 - 110,815,408 (-)	Ensembl	panpan1.1		panPan2

RAB20
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	22	58,825,147 - 58,853,921 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	22	58,825,667 - 58,853,667 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	22	58,534,701 - 58,563,463 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	22	59,447,953 - 59,476,697 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	22	59,447,953 - 59,476,746 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	22	58,948,658 - 58,977,901 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	22	58,940,714 - 58,970,373 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	22	58,976,123 - 59,005,638 (-)	NCBI		UU_Cfam_GSD_1.0

Rab20
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	193,687,535 - 193,716,912 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936472	2,234,873 - 2,264,622 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936472	2,234,826 - 2,264,613 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RAB20
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	77,167,059 - 77,188,898 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	11	77,167,052 - 77,188,893 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	84,681,262 - 84,703,347 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RAB20
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	88,769,676 - 88,803,384 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	88,770,271 - 88,803,177 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666046	45,502,751 - 45,539,015 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rab20
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624793	2,180,419 - 2,198,962 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624793	2,180,803 - 2,199,420 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Rab20
146 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	95
Count of miRNA genes:	77
Interacting mature miRNAs:	91
Transcripts:	ENSRNOT00000031109
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1600378	Arunc4	Aerobic running capacity QTL 4		0.03	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	380245	80345693	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor depth of invasion (CMO:0001888)	16	17696791	82635055	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor depth of invasion (CMO:0001888)	16	17696791	82635055	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor diameter (CMO:0001889)	16	17696791	82635055	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor diameter (CMO:0001889)	16	17696791	82635055	Rat
1578768	Stresp22	Stress response QTL 22	2.8		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	16	35288870	80288870	Rat
2293690	Bss45	Bone structure and strength QTL 45	5.13	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	16	37752156	82752156	Rat
2300163	Bmd64	Bone mineral density QTL 64	5.3	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	16	37752156	82752156	Rat
7205510	Activ5	Activity QTL 5	3.78	0.00028	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	42396345	84729064	Rat
8694429	Bw164	Body weight QTL 164	5	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	16	52726464	84729064	Rat
8694364	Abfw7	Abdominal fat weight QTL 7	12.22	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	16	52726464	84729064	Rat
7411648	Foco22	Food consumption QTL 22	15	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	52726464	84729064	Rat
631525	Pia14	Pristane induced arthritis QTL 14	4.4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	16	55711087	83402471	Rat

Markers in Region

RH143287

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	78,019,415 - 78,019,654 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	83,358,195 - 83,358,433	NCBI	Rnor6.0
Rnor_5.0	16	82,824,990 - 82,825,228	UniSTS	Rnor5.0
RGSC_v3.4	16	82,871,081 - 82,871,319	UniSTS	RGSC3.4
Celera	16	75,818,182 - 75,818,420	UniSTS
RH 3.4 Map	16	760.4	UniSTS
Cytogenetic Map	16	q12.5	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	43	6	4	11	4	4	6		31	19	11	4
Low	1		51	37	8	37	4	5	68	4	22		4
Below cutoff									6

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109535	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473970	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000031109 ⟹ ENSRNOP00000033660

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	78,019,337 - 78,043,529 (+)	Ensembl
Rnor_6.0 Ensembl	16	83,358,116 - 83,382,326 (+)	Ensembl

RefSeq Acc Id:

NM_001109535 ⟹ NP_001103005

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	84,721,427 - 84,745,610 (+)	NCBI
mRatBN7.2	16	78,019,337 - 78,043,529 (+)	NCBI
Rnor_6.0	16	83,358,116 - 83,382,326 (+)	NCBI
Rnor_5.0	16	82,824,911 - 82,848,168 (+)	NCBI
RGSC_v3.4	16	82,871,002 - 82,895,146 (+)	RGD
Celera	16	75,818,103 - 75,841,942 (+)	RGD

Sequence:

show sequence

GGTCGCAGGGCTGAGTTCACTGTCGAGTACAGAGCGGTGGAGCGCTTCCTCTCCGGAACTTCAG
CGCGTTCGGACCTCAGGCCAGTGCCACTAGAGTTCTGGATTCCTAGAGGCCGGGGTCCGCGTTC
CCTGGCATCCTGGACTGGTGACCGAGAAGCGCAGGGGCCACCTCCTCCGCGGCTATGCGGAAGC
CGGATGGGAAGATCGTGCTGCTGGGGGACATGAACGTGGGTAAAACGTCCTTGCTGCAGCGCTA
CATGGAGCGTCGCTTCCCGGACACGGTCAGCACCGTGGGCGGCGCCTTCTACCTGAAGCAGTGG
CGCTCCTTCAACATCTCTATATGGGACACCGCAGGGCGGGAGCAGTTCCACGGTCTGGGCTCCA
TGTACTGCCGGGGAGCGGCCGCTATTATCCTTACCTACGATGTGAACAACCCACAGAGCCTGTT
TGAGCTGGAGGACAGATTCCTGGGCCTGACAGAAACAGCCAACAATGACTGCCTATTTGCCATT
GTGGGGAACAAAGTAGACCTGACCACGGAGCGTGGCCCGGAGGGCGGGGAGAAGGATCAGGCCT
CTGGGAAGACAGGCAGCTGTGTCTCCTCCAAGGTACCCAAGCAGGTGCATCCGGAGGATGCGAT
GGCCCTTTACAAGAAGATCCTGAAGTACAAGATGTTAGACGAGAGGGAGATGCCGGGTGCCGAG
CAAATGTGCTTTGAGACCAGCGCCAAGACCGGACACAACGTGGACCTCCTCTTTGAAACCTTGT
TCGACCTGGTGGTACCTATGATCACTCGGCAGAAGGCTGAGGAGTCGTCTCCGATTGTGGATAT
AACCATCTGCAAAGCACCCAAACAGACTCGATCTGGGTGCTGTGCCTAATGGCAGGAGGTCTGT
CTTGTCATGTGCTATGTGTGGGAGCCATTGGGCTAAGAAGTCACACAGTGCTGTGTTCAGAGGA
AAATGGACGAATGACCACCAGCTGCTGATACAGGCCACAGGACCCAGTGACCTCTGGGCATCTG
GAGGTGGCACTCAAACCTTCTGTGGAGCCAGCCTGGTGCCACCACATCTACTGCCCTTTGCATT
CATCTGTCATACCATCTCAGAGCCTGCAGTCTGAGGTCCCGCCTTGAACTGGTCTTGACTTGCT
AAGTCACTACATCCTGCACCCCGTCTGTTCTCAGAGGCCTGTCTCCACTGTGATTCATATATGG
TCTTCCTGTTTGATACCCGTACCTTGATGTGTTATGATGATGATGACTCTCCATGTTTAATTTA
TATAAATCAGGAACAGCTGTTTTTATACTGGATGAAGCCAGATGGGCTATACATTATTAAAAAA
TTGATTTGGGGGAAAAGCCTTGTTATTGGGAATGTTTATTTGAACCACAGGAGATTCCTTAATC
CTGGGAGGGGTGGGAGAGTGATTGGGGGCAGGGGTGGTTACCACGAACCTGTGGTTAAATGTGG
CAGTGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001103005	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM08822	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000033660
	ENSRNOP00000033660.2

RefSeq Acc Id:

NP_001103005 ⟸ NM_001109535

- UniProtKB:

D4AAE6 (UniProtKB/TrEMBL), A6IWQ0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MRKPDGKIVLLGDMNVGKTSLLQRYMERRFPDTVSTVGGAFYLKQWRSFNISIWDTAGREQFHG
LGSMYCRGAAAIILTYDVNNPQSLFELEDRFLGLTETANNDCLFAIVGNKVDLTTERGPEGGEK
DQASGKTGSCVSSKVPKQVHPEDAMALYKKILKYKMLDEREMPGAEQMCFETSAKTGHNVDLLF
ETLFDLVVPMITRQKAEESSPIVDITICKAPKQTRSGCCA

hide sequence

RefSeq Acc Id:

ENSRNOP00000033660 ⟸ ENSRNOT00000031109

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4AAE6-F1-model_v2	AlphaFold	D4AAE6	1-232	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700246

Promoter ID:

EPDNEW_R10769

Type:

initiation region

Name:

Rab20_1

Description:

RAB20, member RAS oncogene family

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	16	83,358,159 - 83,358,219	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1593487	AgrOrtholog
BioCyc Gene	G2FUF-10653	BioCyc
Ensembl Genes	ENSRNOG00000023991	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000031109	ENTREZGENE
	ENSRNOT00000031109.3	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
InterPro	P-loop_NTPase	UniProtKB/TrEMBL
	Rab20	UniProtKB/TrEMBL
	Ras_GTPase	UniProtKB/TrEMBL
	Small_GTP-bd	UniProtKB/TrEMBL
KEGG Report	rno:689377	UniProtKB/TrEMBL
NCBI Gene	689377	ENTREZGENE
PANTHER	DRAB5-RELATED	UniProtKB/TrEMBL
	RAS-RELATED PROTEIN RAB-20	UniProtKB/TrEMBL
Pfam	Ras	UniProtKB/TrEMBL
PhenoGen	Rab20	PhenoGen
PRINTS	RASTRNSFRMNG	UniProtKB/TrEMBL
PROSITE	RAB	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000023991	RatGTEx
SMART	RAB	UniProtKB/TrEMBL
	RAS	UniProtKB/TrEMBL
	RHO	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A6IWQ0	ENTREZGENE, UniProtKB/TrEMBL
	D4AAE6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-09-17	Rab20	RAB20, member RAS oncogene family	LOC686866	similar to Ras-related protein Rab-20	Data merged from RGD:1592488	1643240	APPROVED
2008-03-06	Rab20	RAB20, member RAS oncogene family	LOC689377	similar to Ras-related protein Rab-20	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC689377	similar to Ras-related protein Rab-20			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-20	LOC686866	similar to Ras-related protein Rab-20			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar