Golga4 (golgin A4) - Rat Genome Database

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Gene: Golga4 (golgin A4) Rattus norvegicus
Analyze
Symbol: Golga4
Name: golgin A4
RGD ID: 1591925
Description: Predicted to enable small GTPase binding activity. Predicted to be involved in Golgi to plasma membrane protein transport and positive regulation of axon extension. Predicted to be located in cytoplasm and nucleoplasm. Predicted to be active in Golgi apparatus. Orthologous to human GOLGA4 (golgin A4); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: golgi autoantigen, golgin subfamily a, 4; Golgin subfamily A member 4; LOC501069; similar to golgi autoantigen golgin subtype a4; tGolgin-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
NCBI Annotation Information: Annotation category: suggests misassembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88127,085,830 - 127,163,227 (+)NCBIGRCr8
mRatBN7.28118,208,200 - 118,285,003 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx8123,807,532 - 123,885,204 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08122,006,475 - 122,084,146 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08119,838,918 - 119,917,014 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08127,171,221 - 127,248,938 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8127,171,537 - 127,248,538 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08126,393,530 - 126,471,244 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48123,404,540 - 123,504,104 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera8117,393,586 - 117,470,254 (+)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (ISO)
1-nitropyrene  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2-palmitoylglycerol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
aflatoxin M1  (ISO)
alpha-pinene  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzatropine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
carmustine  (ISO)
chromium(6+)  (ISO)
cisplatin  (EXP,ISO)
clorgyline  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
hexadecanoic acid  (ISO)
hydrogen peroxide  (ISO)
inulin  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
linsidomine  (EXP)
Mecamylamine  (ISO)
methapyrilene  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
nicotine  (ISO)
Nivalenol  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
PhIP  (EXP)
resveratrol  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (ISO)
titanium dioxide  (ISO)
toluene  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
triticonazole  (EXP)
troglitazone  (ISO)
trovafloxacin  (ISO)
tubocurarine  (ISO)
tunicamycin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12162805   PMID:12477932   PMID:14580338   PMID:15265687   PMID:18570454   PMID:19224922   PMID:22705394  


Genomics

Comparative Map Data
Golga4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88127,085,830 - 127,163,227 (+)NCBIGRCr8
mRatBN7.28118,208,200 - 118,285,003 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx8123,807,532 - 123,885,204 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08122,006,475 - 122,084,146 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08119,838,918 - 119,917,014 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08127,171,221 - 127,248,938 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8127,171,537 - 127,248,538 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08126,393,530 - 126,471,244 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48123,404,540 - 123,504,104 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera8117,393,586 - 117,470,254 (+)NCBICelera
Cytogenetic Map8q32NCBI
GOLGA4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38337,243,271 - 37,366,879 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl337,243,191 - 37,366,879 (+)EnsemblGRCh38hg38GRCh38
GRCh37337,284,762 - 37,408,370 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36337,259,742 - 37,383,246 (+)NCBINCBI36Build 36hg18NCBI36
Build 34337,259,741 - 37,383,245NCBI
Celera337,218,214 - 37,341,938 (+)NCBICelera
Cytogenetic Map3p22.2NCBI
HuRef337,225,865 - 37,349,347 (+)NCBIHuRef
CHM1_1337,236,284 - 37,359,981 (+)NCBICHM1_1
T2T-CHM13v2.0337,244,671 - 37,368,411 (+)NCBIT2T-CHM13v2.0
Golga4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399118,335,280 - 118,411,587 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9118,335,335 - 118,411,587 (+)EnsemblGRCm39 Ensembl
GRCm389118,506,196 - 118,582,519 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9118,506,267 - 118,582,519 (+)EnsemblGRCm38mm10GRCm38
MGSCv379118,415,436 - 118,491,637 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369118,355,016 - 118,431,217 (+)NCBIMGSCv36mm8
Celera9118,976,652 - 119,052,515 (+)NCBICelera
Cytogenetic Map9F3NCBI
cM Map970.23NCBI
Golga4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554214,131,653 - 4,243,651 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554214,130,040 - 4,251,968 (+)NCBIChiLan1.0ChiLan1.0
GOLGA4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2237,205,006 - 37,325,187 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1337,209,970 - 37,329,951 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0337,149,793 - 37,269,709 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1337,437,626 - 37,556,908 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl337,442,669 - 37,545,634 (+)Ensemblpanpan1.1panPan2
GOLGA4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1237,106,051 - 7,232,628 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl237,106,342 - 7,232,624 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha237,146,003 - 7,276,215 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0237,391,780 - 7,521,590 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl237,387,034 - 7,521,591 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1237,211,290 - 7,337,193 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0237,353,132 - 7,477,262 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0237,344,008 - 7,470,020 (+)NCBIUU_Cfam_GSD_1.0
Golga4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118193,602,989 - 193,699,770 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647326,741,858 - 26,838,382 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647326,741,548 - 26,838,342 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GOLGA4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1322,125,121 - 22,250,466 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11322,125,131 - 22,250,465 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21324,019,468 - 24,143,177 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GOLGA4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1152,046,436 - 2,162,590 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl152,046,156 - 2,162,235 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606310,782,985 - 10,899,389 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Golga4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624890931,878 - 938,932 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Golga4
730 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:53
Count of miRNA genes:51
Interacting mature miRNAs:53
Transcripts:ENSRNOT00000051290
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088626Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)870513503118219066Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8100149864120994388Rat
1599689Iddm24Insulin dependent diabetes mellitus QTL 244.720.001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)8112834440118649220Rat

Markers in Region
D8Rat2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28118,218,931 - 118,219,066 (+)MAPPERmRatBN7.2
Rnor_6.08127,182,508 - 127,182,642NCBIRnor6.0
Rnor_5.08126,404,814 - 126,404,948UniSTSRnor5.0
RGSC_v3.48123,415,272 - 123,415,406UniSTSRGSC3.4
RGSC_v3.48123,415,271 - 123,415,406RGDRGSC3.4
RGSC_v3.18123,435,009 - 123,435,143RGD
Celera8117,404,316 - 117,404,450UniSTS
RH 3.4 Map81303.7UniSTS
RH 3.4 Map81303.7RGD
RH 2.0 Map81024.7RGD
SHRSP x BN Map881.9299RGD
FHH x ACI Map886.7699RGD
Cytogenetic Map8q32UniSTS
RH143454  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28118,222,454 - 118,222,585 (+)MAPPERmRatBN7.2
Rnor_6.08127,186,031 - 127,186,161NCBIRnor6.0
Rnor_5.08126,408,337 - 126,408,467UniSTSRnor5.0
RGSC_v3.48123,418,795 - 123,418,925UniSTSRGSC3.4
Celera8117,407,839 - 117,407,969UniSTS
RH 3.4 Map81302.6UniSTS
Cytogenetic Map8q32UniSTS
RH129880  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28118,285,031 - 118,285,243 (+)MAPPERmRatBN7.2
Rnor_6.08127,248,567 - 127,248,778NCBIRnor6.0
Rnor_5.08126,470,873 - 126,471,084UniSTSRnor5.0
RGSC_v3.48123,504,133 - 123,504,344UniSTSRGSC3.4
Celera8117,470,283 - 117,470,494UniSTS
RH 3.4 Map81292.1UniSTS
Cytogenetic Map8q32UniSTS
RH138253  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28118,260,645 - 118,260,783 (+)MAPPERmRatBN7.2
Rnor_6.08127,224,198 - 127,224,335NCBIRnor6.0
Rnor_5.08126,446,504 - 126,446,641UniSTSRnor5.0
RGSC_v3.48123,479,764 - 123,479,901UniSTSRGSC3.4
Celera8117,445,926 - 117,446,063UniSTS
RH 3.4 Map81291.9UniSTS
Cytogenetic Map8q32UniSTS
RH139299  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28118,248,509 - 118,248,669 (+)MAPPERmRatBN7.2
Rnor_6.08127,211,949 - 127,212,108NCBIRnor6.0
Rnor_5.08126,434,255 - 126,434,414UniSTSRnor5.0
RGSC_v3.48123,467,302 - 123,467,461UniSTSRGSC3.4
Celera8117,433,814 - 117,433,973UniSTS
RH 3.4 Map81290.4UniSTS
Cytogenetic Map8q32UniSTS
RH135993  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28118,285,100 - 118,285,269 (+)MAPPERmRatBN7.2
Rnor_6.08127,248,636 - 127,248,804NCBIRnor6.0
Rnor_5.08126,470,942 - 126,471,110UniSTSRnor5.0
RGSC_v3.48123,504,202 - 123,504,370UniSTSRGSC3.4
Celera8117,470,352 - 117,470,520UniSTS
Cytogenetic Map8q32UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001191080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC085124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000051290   ⟹   ENSRNOP00000039533
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl8127,171,636 - 127,248,310 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000078625   ⟹   ENSRNOP00000069066
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl8127,171,537 - 127,248,511 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000087753   ⟹   ENSRNOP00000075007
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl8127,171,636 - 127,248,538 (+)Ensembl
RefSeq Acc Id: NM_001191080   ⟹   NP_001178009
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88127,086,082 - 127,162,827 (+)NCBI
mRatBN7.28118,208,200 - 118,285,003 (+)NCBI
Rnor_6.08127,171,636 - 127,248,538 (+)NCBI
Rnor_5.08126,393,530 - 126,471,244 (+)NCBI
Celera8117,393,586 - 117,470,254 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063266012   ⟹   XP_063122082
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88127,085,830 - 127,163,227 (+)NCBI
RefSeq Acc Id: XM_063266013   ⟹   XP_063122083
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88127,085,830 - 127,163,227 (+)NCBI
RefSeq Acc Id: XM_063266014   ⟹   XP_063122084
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88127,085,830 - 127,163,227 (+)NCBI
RefSeq Acc Id: XM_063266015   ⟹   XP_063122085
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88127,086,030 - 127,163,227 (+)NCBI
RefSeq Acc Id: XM_063266016   ⟹   XP_063122086
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88127,085,830 - 127,157,351 (+)NCBI
RefSeq Acc Id: XM_063266017   ⟹   XP_063122087
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88127,085,830 - 127,163,227 (+)NCBI
RefSeq Acc Id: XM_063266019   ⟹   XP_063122089
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88127,085,830 - 127,163,227 (+)NCBI
RefSeq Acc Id: XM_063266020   ⟹   XP_063122090
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88127,085,830 - 127,163,227 (+)NCBI
RefSeq Acc Id: XM_063266021   ⟹   XP_063122091
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88127,085,830 - 127,163,227 (+)NCBI
RefSeq Acc Id: XM_063266022   ⟹   XP_063122092
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88127,085,830 - 127,163,227 (+)NCBI
RefSeq Acc Id: XM_063266023   ⟹   XP_063122093
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88127,085,830 - 127,163,227 (+)NCBI
RefSeq Acc Id: XM_063266024   ⟹   XP_063122094
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88127,086,030 - 127,163,227 (+)NCBI
RefSeq Acc Id: XM_063266025   ⟹   XP_063122095
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88127,085,830 - 127,163,227 (+)NCBI
RefSeq Acc Id: XM_063266026   ⟹   XP_063122096
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88127,085,830 - 127,163,227 (+)NCBI
RefSeq Acc Id: XM_063266027   ⟹   XP_063122097
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88127,086,030 - 127,163,227 (+)NCBI
RefSeq Acc Id: XM_063266028   ⟹   XP_063122098
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88127,085,830 - 127,163,227 (+)NCBI
RefSeq Acc Id: XM_063266029   ⟹   XP_063122099
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88127,085,830 - 127,163,227 (+)NCBI
RefSeq Acc Id: NP_001178009   ⟸   NM_001191080
- UniProtKB: Q5U4E6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000075007   ⟸   ENSRNOT00000087753
RefSeq Acc Id: ENSRNOP00000039533   ⟸   ENSRNOT00000051290
RefSeq Acc Id: ENSRNOP00000069066   ⟸   ENSRNOT00000078625
RefSeq Acc Id: XP_063122082   ⟸   XM_063266012
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063122083   ⟸   XM_063266013
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063122091   ⟸   XM_063266021
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063122084   ⟸   XM_063266014
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063122087   ⟸   XM_063266017
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063122092   ⟸   XM_063266022
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063122098   ⟸   XM_063266028
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063122089   ⟸   XM_063266019
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063122090   ⟸   XM_063266020
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063122093   ⟸   XM_063266023
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063122095   ⟸   XM_063266025
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063122096   ⟸   XM_063266026
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063122099   ⟸   XM_063266029
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063122086   ⟸   XM_063266016
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063122085   ⟸   XM_063266015
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063122094   ⟸   XM_063266024
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063122097   ⟸   XM_063266027
- Peptide Label: isoform X15
Protein Domains
GRIP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5U4E6-F1-model_v2 AlphaFold Q5U4E6 1-2259 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696364
Promoter ID:EPDNEW_R6887
Type:multiple initiation site
Name:Golga4_1
Description:golgin A4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08127,171,672 - 127,171,732EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1591925 AgrOrtholog
BioCyc Gene G2FUF-28817 BioCyc
Ensembl Genes ENSRNOG00000029910 Ensembl
Gene3D-CATH GRIP domain UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7123209 IMAGE-MGC_LOAD
InterPro GRIP_dom UniProtKB/Swiss-Prot
MGC_CLONE MGC:105866 IMAGE-MGC_LOAD
NCBI Gene 501069 ENTREZGENE
PANTHER GOLGIN UniProtKB/Swiss-Prot
  GOLGIN SUBFAMILY A MEMBER 4 UniProtKB/Swiss-Prot
Pfam GRIP UniProtKB/Swiss-Prot
PhenoGen Golga4 PhenoGen
PROSITE GRIP UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000029910 RatGTEx
SMART Grip UniProtKB/Swiss-Prot
Superfamily-SCOP GRIP domain UniProtKB/Swiss-Prot
UniProt GOGA4_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-02 Golga4  golgin A4  Golga4  golgi autoantigen, golgin subfamily a, 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 Golga4  golgi autoantigen, golgin subfamily a, 4  LOC501069  similar to golgi autoantigen golgin subtype a4; tGolgin-1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC501069  similar to golgi autoantigen golgin subtype a4; tGolgin-1      Symbol and Name status set to provisional 70820 PROVISIONAL