Adat1 (adenosine deaminase, tRNA-specific 1)

Gene: Adat1 (adenosine deaminase, tRNA-specific 1) Rattus norvegicus

Analyze

Symbol:

Adat1

Name:

adenosine deaminase, tRNA-specific 1

RGD ID:

1591020

Description:

Predicted to enable RNA binding activity and tRNA-specific adenosine deaminase activity. Predicted to be involved in tRNA processing. Orthologous to human ADAT1 (adenosine deaminase tRNA specific 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; amphetamine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC690810; similar to adenosine deaminase, tRNA-specific 1; tRNA-specific adenosine deaminase 1

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ADAT1 (adenosine deaminase tRNA specific 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Adat1 (adenosine deaminase, tRNA-specific 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Adat1 (adenosine deaminase tRNA specific 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ADAT1 (adenosine deaminase tRNA specific 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ADAT1 (adenosine deaminase tRNA specific 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Adat1 (adenosine deaminase tRNA specific 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ADAT1 (adenosine deaminase tRNA specific 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ADAT1 (adenosine deaminase tRNA specific 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Adat1 (adenosine deaminase tRNA specific 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CCDC25 (coiled-coil domain containing 25)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	ADAT1 (adenosine deaminase tRNA specific 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Adat1 (adenosine deaminase, tRNA-specific 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	adat1 (adenosine deaminase tRNA specific 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Adat1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	TAD1	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	adat1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Candidate Gene For:

Eau8

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	56,825,153 - 56,866,136 (-)	NCBI		GRCr8
mRatBN7.2	19	39,918,083 - 39,956,886 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	39,918,227 - 39,956,883 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	46,796,585 - 46,820,429 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	47,449,915 - 47,473,761 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	49,695,556 - 49,719,341 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	44,172,496 - 44,212,147 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	44,187,331 - 44,211,208 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	54,979,589 - 55,017,852 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	41,902,820 - 41,926,545 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	19	39,293,603 - 39,317,329 (-)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Joubert syndrome 20 (ISO)

prostate cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

4,4'-sulfonyldiphenol (EXP)

amphetamine (EXP)

aristolochic acid A (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

butanal (ISO)

caffeine (ISO)

chlorpyrifos (ISO)

cobalt dichloride (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

doxorubicin (ISO)

Enterolactone (ISO)

ethanol (ISO)

methotrexate (ISO)

paracetamol (EXP,ISO)

potassium chromate (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

succimer (ISO)

tert-butyl hydroperoxide (ISO)

trichloroethene (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

tRNA processing (IBA,ISO)

Molecular Function

metal ion binding (IEA)

RNA binding (ISO)

tRNA-specific adenosine deaminase activity (IBA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10430867

Genomics

Comparative Map Data

Adat1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	56,825,153 - 56,866,136 (-)	NCBI		GRCr8
mRatBN7.2	19	39,918,083 - 39,956,886 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	39,918,227 - 39,956,883 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	46,796,585 - 46,820,429 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	47,449,915 - 47,473,761 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	49,695,556 - 49,719,341 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	44,172,496 - 44,212,147 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	44,187,331 - 44,211,208 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	54,979,589 - 55,017,852 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	41,902,820 - 41,926,545 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	19	39,293,603 - 39,317,329 (-)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

ADAT1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	75,596,868 - 75,623,281 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	75,596,868 - 75,623,300 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	75,630,766 - 75,657,179 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	74,190,499 - 74,214,655 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	16	74,190,498 - 74,214,655	NCBI
Celera	16	59,926,593 - 59,951,568 (-)	NCBI		Celera
Cytogenetic Map	16	q23.1	NCBI
HuRef	16	61,385,921 - 61,410,898 (-)	NCBI		HuRef
CHM1_1	16	77,044,616 - 77,069,607 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	81,645,156 - 81,671,584 (-)	NCBI		T2T-CHM13v2.0

Adat1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	112,685,552 - 112,718,938 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	112,693,540 - 112,718,934 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	111,958,920 - 111,992,307 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	111,966,908 - 111,992,302 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	114,490,808 - 114,516,202 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	114,853,581 - 114,878,975 (-)	NCBI		MGSCv36	mm8
Celera	8	116,196,099 - 116,221,633 (-)	NCBI		Celera
Cytogenetic Map	8	E1	NCBI
cM Map	8	58.23	NCBI

Adat1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955484	1,942,529 - 1,967,830 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955484	1,942,868 - 1,964,901 (+)	NCBI	ChiLan1.0	ChiLan1.0

ADAT1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	85,295,391 - 85,345,361 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	91,218,164 - 91,264,114 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	56,162,278 - 56,192,856 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	75,510,780 - 75,540,312 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	75,516,899 - 75,540,312 (-)	Ensembl	panpan1.1		panPan2

ADAT1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	75,191,114 - 75,235,735 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	75,190,772 - 75,234,480 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	75,168,475 - 75,213,089 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	75,505,202 - 75,549,843 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	75,505,232 - 75,548,588 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	75,441,201 - 75,485,808 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	75,276,415 - 75,321,053 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	75,767,366 - 75,812,376 (+)	NCBI		UU_Cfam_GSD_1.0

Adat1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	35,297,970 - 35,334,802 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	24,266,285 - 24,289,841 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	24,244,412 - 24,291,111 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ADAT1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	12,076,356 - 12,108,088 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	12,076,319 - 12,107,937 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	11,917,240 - 11,948,862 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ADAT1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	61,083,029 - 61,108,751 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	61,082,819 - 61,108,330 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	14,951,289 - 14,976,352 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Adat1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624746	11,356,599 - 11,378,183 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Adat1
343 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	649
Count of miRNA genes:	278
Interacting mature miRNAs:	339
Transcripts:	ENSRNOT00000026309
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
9589102	Slep13	Serum leptin concentration QTL 13	4.63	0.001	blood leptin amount (VT:0005667)	plasma leptin level (CMO:0000781)	19	569374	45569374	Rat
8694186	Bw152	Body weight QTL 152	3.34	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	569374	45569374	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2187927	46708701	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2187927	56457239	Rat
61447	Tcas1	Tongue tumor susceptibility QTL 1	6.08		tongue integrity trait (VT:0010553)	squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)	19	2316121	47316121	Rat
2317848	Alcrsp21	Alcohol response QTL 21	1.899999976158142	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	19	3204777	48204777	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	4096155	55283277	Rat
724518	Uae19	Urinary albumin excretion QTL 19	5.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	7457249	42983518	Rat
61423	Cia14	Collagen induced arthritis QTL 14	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	19	10827970	43544039	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	15455860	57337602	Rat
1331788	Rf45	Renal function QTL 45	2.818		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	19	15605023	46559041	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	15630201	57337602	Rat
2298478	Eau8	Experimental allergic uveoretinitis QTL 8		0.0163	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	19	17154433	57337602	Rat
61350	Bp32	Blood pressure QTL 32		0.012	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	19	20483575	57337602	Rat
724546	Kidm3	Kidney mass QTL 3	3.1		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	19	29322490	57337602	Rat
1358200	Insglur2	Insulin/glucose ratio QTL 2	4.1		blood glucose amount (VT:0000188)	serum insulin level (CMO:0000358)	19	33838214	55283146	Rat
1358200	Insglur2	Insulin/glucose ratio QTL 2	4.1		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	19	33838214	55283146	Rat

Markers in Region

BF406024

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	39,946,551 - 39,946,709 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	44,200,908 - 44,201,065	NCBI	Rnor6.0
Rnor_5.0	19	55,007,518 - 55,007,675	UniSTS	Rnor5.0
RGSC_v3.4	19	41,916,211 - 41,916,368	UniSTS	RGSC3.4
Celera	19	39,306,994 - 39,307,151	UniSTS
RH 3.4 Map	19	495.3	UniSTS
Cytogenetic Map	19	q12	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium			6	2	6	2			5		7	2
Low	3	43	51	39	13	39	8	11	69	35	34	9	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109611	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001396846	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255635	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255636	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255638	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772535	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278298	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC117869	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000026309 ⟹ ENSRNOP00000026309

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	39,933,156 - 39,956,883 (-)	Ensembl
Rnor_6.0 Ensembl	19	44,187,331 - 44,211,208 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000105306 ⟹ ENSRNOP00000089520

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	39,933,156 - 39,956,883 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000110420 ⟹ ENSRNOP00000080487

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	39,918,227 - 39,956,883 (-)	Ensembl

RefSeq Acc Id:

NM_001109611 ⟹ NP_001103081

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	56,842,209 - 56,866,117 (-)	NCBI
mRatBN7.2	19	39,932,957 - 39,956,867 (-)	NCBI
Rnor_6.0	19	44,187,517 - 44,211,242 (-)	NCBI
Rnor_5.0	19	54,979,589 - 55,017,852 (-)	NCBI
RGSC_v3.4	19	41,902,820 - 41,926,545 (-)	RGD
Celera	19	39,293,603 - 39,317,329 (-)	RGD

Sequence:

show sequence

GTCCTTTAGGGCGTCACTTCCGCAGCGCAGCCAGGTTCTGCGACCAGCGTGGCGGCAGAGGGAG
AGGTTGCGGTGCGTGGATAGCAGGGTGTCAGTGTCTCCGGATCGGCGTCTCGGGTTTTGGCTTT
CTATCATAGCCTCAGCTCCAGCTTCACCTATGTGGACCGCAGATGAGATTGCGCAGCTGTGCTA
TGCACACTACATCAAACTGCCCAAGCAGGGGAAGCCTGAGCCAAACCGTGAGTGGACTCTGTTG
GCGGCTGTGGTGAAAATACAGACTCCAGCTAACCAAGCATGTGACACCCCTGATAAGCAGATAC
AAGTGACAAAGGAAGTTGTCTCAATGGGAACAGGAACAAAATGCATAGGCCAGTCCAAGATGAG
AGAGAGCGGAGACATCCTCAATGACAGCCATGCTGAGGTCATAGCCAGAAGGAGTTTCCAGAGG
TACATCCTCCATCAGCTCCATGTGGCGGCCGTCCTAAAGGAAGACAGCATCTTCCTTCCTGGCA
CTCAGAGAGGACTGTGGAGGCTCAGACCTGACCTGTCTTTTGTGTTTTTCTCTAGCCACACACC
CTGTGGGGACGCCTCCATCATTCCAAAGCTTGAGTTTGAAGAACAGCCTTGCTGTCCTGTCATC
AGAAATTGGGCCAACAACTCACCTGGAGAAGGGAGCGAGACTCTAGAAGGTTCTAGAAATAAAA
GGAGCTGTGAAGGCCCTGACAGTCCTGTAGCCAAGAAGAAAAGGCTTGGAACACCTGCTGGTTC
CCTCTCCGATTGTGTAGCTCACCATGGGGCACAGGAAAGTGGTCCAGCCAAACCAGATGCCAGC
AGCTCTGGTCTCACCAAGGAGGAACTGGATGCTGTCAATGGAACAGCTTCCGGTAGCTTCAAAG
TGGTGGACATATACAGAACGGGAGCCAAGTGTGTTCCTGGAGAAACTGGAGACTTGAGAAAGCC
AGGTGCTGCCTATCACCAGGTGGGGCTACTTCGTGTGAAGCCTGGCCGGGGAGACAGGACATGC
TCCATGTCCTGTAGTGACAAGATGGCGAGGTGGAATGTCCTTGGATGCCAGGGCGCACTGCTAA
TGCACTTCCTGGAGAAGCCCATCTACCTGTCAGCCGTGGTCATCGGGCAGTGCCCATACAGCCA
GGAAGCCATGAGGAGAGCACTGACGGGCAGGTGTCAGGAAACCTTGGTTTTACCCAGAGGCTTT
GAAGTTCAAGAGCTGAAAATACAGCAGTCGAGTTTGCTCTTTGAACAGAGCCGCTGTGCAGTCC
ACAGGAAAAGAGGGGACAGTCCAGGCCGACTCGTCCCTTGTGGGGCAGCTATCAGCTGGAGTGC
TGTTCCTCAGCAGCCTTTGGATGTCACAGCCAATGGTTTCCCACAGGGAACAACGAAGAAAGAA
ATCGGAAGCCCTCGGGCCAGATCCCGAATCAGCAAGGTGGAACTCTTTAGATCATTCCAGAAGC
TGCTGAGCTGCATTGCAGAAGACGAGCGGCCGGACTCCGTCAGGGTGCAGAAGCTGGACACCTA
TCAGGAGTACAAGGAGGCCGCGTCTGCCTACCAGGAAGCCTGGAGTGCACTCCGGAGGGTACAA
CCGTTTTCGTCCTGGATCAGAAACCCACCCAACTACCACCAATTTAAATGACCCGCTGGTATCA
GGACCCTTCACAGTATTTGCCCCTCCCTCCATGCTGAGCAAACCTCTGCTTTTCTGTTGGTTAA
ACCCCAAGGAGAAAGAGATGCCTTCTCCGAGAGCGCTGCCCCTCTTTGGTGTCATAAATGGAAC
CCAGAACCTCATCAGACCGCAGCAGCTCCCTGCTAAGTAGCCTCAGAAACGACCTTGGTATCGG
CCTTCAGCTGTGTCTGATTGGTTCGGAACACACGGCATCAGAGTTTGGAACGTGATGCTTTCAG
AGTGATCTGCAGCAGCTCTGCTTTAATCTTCTTACATTGATTCTGCAAGTGTGCATTGGGCTGA
AATCATCTCAGAATGATGGGAACTCCACAGCCTTTCATCCTGCGGTTGAGAATGTGTCTCAGAT
TCCCAGCCGCCCTTTGAGAACCATCATTCCCAGTCCTCAGCCACCAGATGTGGTTGAAGTTAAC
TTTACCTCAGGCTCAGCACAGGGCTAGCCTTGGAAAGCTCTGTTCTCAGTCAACTTTACCTCAG
GCTCAGCACAGGGCTAGCCTTGGAAAGCTCTGTTCTCAGTTACCAAGAAAGGTCTGTTTGTTTG
TAGCCTACACTGTCCTTGGCTTTCAGTCCTTCCAAGTACCAAGATTATAGGCATAAACCGCCAT
CATAGCTAGCACAAGATAGTCTCTATGTCTCTGTCTCTGTCTCCTCCTCCTCCCCCTATCCCCA
CCTTTTACTTGAGACAAGGCTGGCCTTGAACTCAACAAGCAGCCAAGGATGACCTTGGGCTCTG
ATCTTTTCATCTCTGACTCCTAATGTAACACCGTACTTTGCTTCCAAGATTTTCTTCTGACCAG
TGTTGTGAGGGCCACCATAATCTTGTAACTGCCAGTAGCCACCATCTTTTCCTGCCACACAGAG
ACAGCCAGTGGAGAATGAAGGTGGCAAAGAAGAAAATGGCCAGAATAGCCAAAGCCTGGGGACC
CAGCTTGCACCCAAACTACAAGAGACAAAGGCCTGGTTTGATTGTCTTTAGCTATTTATGGGGC
CCACACATGCTGTGGTGTGTGTGTGTGGTAAGCACCTGTATCAGCTGAGCAGTCCTACCAGGTG
CCTGCTGCTTAGATCAGATTGTTTTCTTGTTAACTCAGTTCCCAAATGCCTTAATTTCCTACAG
CATCAGCAAAAGACCTAGGAACTAACCCTATTTAACTCTCACCTAAGAGCGCGCACCTTATTCC
CACCGTGACTAACTGGCTGGAAATAGAAGCTCTGCTTCTACTCAGTGTCACTGTGTTTCATAGT
GCTGTGTGTGCTGTGCTGTGCTGTGCTGTGCTGTGTGTGCTGTGCTGTGCTGTGCTGTACTGTG
CTGTACTGTGCTGTGCTGTGCTGTGTGCGCTGGGCTTTATTTTGGTTTG

hide sequence

RefSeq Acc Id:

NM_001396846 ⟹ NP_001383775

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	56,846,419 - 56,866,117 (-)	NCBI
mRatBN7.2	19	39,937,168 - 39,956,867 (-)	NCBI

RefSeq Acc Id:

XM_006255635 ⟹ XP_006255697

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	56,842,203 - 56,866,118 (-)	NCBI
mRatBN7.2	19	39,933,156 - 39,956,878 (-)	NCBI
Rnor_6.0	19	44,187,517 - 44,212,147 (-)	NCBI
Rnor_5.0	19	54,979,589 - 55,017,852 (-)	NCBI

Sequence:

show sequence

TGTTTTTTTAAGATTTATTTTTATTATTAATTATGTATGTGTGCATTAGAGTGCAGGTGCCCTC
TGAGGCCAGAGATGTTGGGTCCCTTAGAGCCGGAGTTACAGACATTTGTAAGCTACCCAACATA
GATGCTGAGAAACAAAGTCAGCCCTACGAGAATAGGGTGTGCTCTTAACTCCTAAGCCAACTTT
CCAGTCCCATCCGTGGTCATAATCTTTAACAGATGTATATTAACGTCTGTTCAGTACGAGGTAT
TGTTCTGAAATACTGGAAATACCAGGGAGCAAAAATCAAATCACTACTTCCATAGAAACATTTT
CTTTCAGGCTTATTGGGGAGTTGAGGGAGAAGCAGATCAAGTGCATGTTCCTTTTTGGTGGCAG
CACACTCATGCACAAGGCAGGGTAAGAGGGCTGCAGTAGACACACAGTAGACAAGAGACATGGC
TCAGTGCTGTGAGTGACTACGGCTCTTATAGAGGACTGCGGTTTGGTACCCAGCATCAATGTCA
GGCAGCTGGCAACCTGAGATCCAGTTCCTTCCTCATGGCCTTTTCTAGCTGCCTTGGTCATTTG
CATGCTCTTTTGTGCATAAATTGATAGAGGCATGGGCACATAAATCTTTTAAAAAATATTTATT
ACCCCTGAGAGAAATAAGAGGCAGATCATCCAAGCCCATGATAATCATACAGGATATGTTGTGA
CAGAGGTGAGAAACTGTCAGAGGATCTGCTTATAGTTCTATTCAGAATTCTGGTGAGTTGCGAG
CTATATCGGTTTCATAGCTCTACTTTGGGAGGCAGCTTCCTCCCTTCACATCTTGGCTGTGGAA
CTGAGCTACGGTGACTCTGTTCCCAGAGACTACAAAGACCAGCGTGCTTTGCGGGCGGGGCTTT
AAAGGAGCTGTCCTTTAGGGCGTCACTTCCGCAGCGCAGCCAGGTTCTGCGACCAGCGTGGCGG
CAGAGGGAGAGGTTGCGGTGCGTGGATAGCAGGGTGTCAGTGTCTCCGGATCGGCGTCTCGGGG
TTAGCGCCACACAACTGTCCTTGTGTGTGTGGGAGAAACTGTGAGGACCCGTGTCCACCGCTCC
CACAGGGAGGGGGTCTCAGAGCCCTGATAGGCGCTCCAGCCCAGTGGAGCCCCACCTCGGGCCT
CAGCTCCAGCTTCACCTATGTGGACCGCAGATGAGATTGCGCAGCTGTGCTATGCACACTACAT
CAAACTGCCCAAGCAGGGGAAGCCTGAGCCAAACCGTGAGTGGACTCTGTTGGCGGCTGTGGTG
AAAATACAGACTCCAGCTAACCAAGCATGTGACACCCCTGATAAGCAGATACAAGTGACAAAGG
AAGTTGTCTCAATGGGAACAGGAACAAAATGCATAGGCCAGTCCAAGATGAGAGAGAGCGGAGA
CATCCTCAATGACAGCCATGCTGAGGTCATAGCCAGAAGGAGTTTCCAGAGGTACATCCTCCAT
CAGCTCCATGTGGCGGCCGTCCTAAAGGAAGACAGCATCTTCCTTCCTGGCACTCAGAGAGGAC
TGTGGAGGCTCAGACCTGACCTGTCTTTTGTGTTTTTCTCTAGCCACACACCCTGTGGGGACGC
CTCCATCATTCCAAAGCTTGAGTTTGAAGAACAGCCTTGCTGTCCTGTCATCAGAAATTGGGCC
AACAACTCACCTGGAGAAGGGAGCGAGACTCTAGAAGGTTCTAGAAATAAAAGGAGCTGTGAAG
GCCCTGACAGTCCTGTAGCCAAGAAGAAAAGGCTTGGAACACCTGCTGGTTCCCTCTCCGATTG
TGTAGCTCACCATGGGGCACAGGAAAGTGGTCCAGCCAAACCAGATGCCAGCAGCTCTGGTCTC
ACCAAGGAGGAACTGGATGCTGTCAATGGAACAGCTTCCGGTAGCTTCAAAGTGGTGGACATAT
ACAGAACGGGAGCCAAGTGTGTTCCTGGAGAAACTGGAGACTTGAGAAAGCCAGGTGCTGCCTA
TCACCAGGTGGGGCTACTTCGTGTGAAGCCTGGCCGGGGAGACAGGACATGCTCCATGTCCTGT
AGTGACAAGATGGCGAGGTGGAATGTCCTTGGATGCCAGGGCGCACTGCTAATGCACTTCCTGG
AGAAGCCCATCTACCTGTCAGCCGTGGTCATCGGGCAGTGCCCATACAGCCAGGAAGCCATGAG
GAGAGCACTGACGGGCAGGTGTCAGGAAACCTTGGTTTTACCCAGAGGCTTTGAAGTTCAAGAG
CTGAAAATACAGCAGTCGAGTTTGCTCTTTGAACAGAGCCGCTGTGCAGTCCACAGGAAAAGAG
GGGACAGTCCAGGCCGACTCGTCCCTTGTGGGGCAGCTATCAGCTGGAGTGCTGTTCCTCAGCA
GCCTTTGGATGTCACAGCCAATGGTTTCCCACAGGGAACAACGAAGAAAGAAATCGGAAGCCCT
CGGGCCAGATCCCGAATCAGCAAGGTGGAACTCTTTAGATCATTCCAGAAGCTGCTGAGCTGCA
TTGCAGAAGACGAGCGGCCGGACTCCGTCAGGGTGCAGAAGCTGGACACCTATCAGGAGTACAA
GGAGGCCGCGTCTGCCTACCAGGAAGCCTGGAGTGCACTCCGGAGGGTACAACCGTTTTCGTCC
TGGATCAGAAACCCACCCAACTACCACCAATTTAAATGACCCGCTGGTATCAGGACCCTTCACA
GTATTTGCCCCTCCCTCCATGCTGAGCAAACCTCTGCTTTTCTGTTGGTTAAACCCCAAGGAGA
AAGAGATGCCTTCTCCGAGAGCGCTGCCCCTCTTTGGTGTCATAAATGGAACCCAGAACCTCAT
CAGACCGCAGCAGCTCCCTGCTAAGTAGCCTCAGAAACGACCTTGGTATCGGCCTTCAGCTGTG
TCTGATTGGTTCGGAACACACGGCATCAGAGTTTGGAACGTGATGCTTTCAGAGTGATCTGCAG
CAGCTCTGCTTTAATCTTCTTACATTGATTCTGCAAGTGTGCATTGGGCTGAAATCATCTCAGA
ATGATGGGAACTCCACAGCCTTTCATCCTGCGGTTGAGAATGTGTCTCAGATTCCCAGCCGCCC
TTTGAGAACCATCATTCCCAGTCCTCAGCCACCAGATGTGGTTGAAGTTAACTTTACCTCAGGC
TCAGCACAGGGCTAGCCTTGGAAAGCTCTGTTCTCAGTCAACTTTACCTCAGGCTCAGCACAGG
GCTAGCCTTGGAAAGCTCTGTTCTCAGTTACCAAGAAAGGTCTGTTTGTTTGTAGCCTACACTG
TCCTTGGCTTTCAGTCCTTCCAAGTACCAAGATTATAGGCATAAACCGCCATCATAGCTAGCAC
AAGATAGTCTCTATGTCTCTGTCTCTGTCTCCTCCTCCTCCCCCTATCCCCACCTTTTACTTGA
GACAAGGCTGGCCTTGAACTCAACAAGCAGCCAAGGATGACCTTGGGCTCTGATCTTTTCATCT
CTGACTCCTAATGTAACACCGTACTTTGCTTCCAAGATTTTCTTCTGACCAGTGTTGTGAGGGC
CACCATAATCTTGTAACTGCCAGTAGCCACCATCTTTTCCTGCCACACAGAGACAGCCAGTGGA
GAATGAAGGTGGCAAAGAAGAAAATGGCCAGAATAGCCAAAGCCTGGGGACCCAGCTTGCACCC
AAACTACAAGAGACAAAGGCCTGGTTTGATTGTCTTTAGCTATTTATGGGGCCCACACATGCTG
TGGTGTGTGTGTGTGGTAAGCACCTGTATCAGCTGAGCAGTCCTACCAGGTGCCTGCTGCTTAG
ATCAGATTGTTTTCTTGTTAACTCAGTTCCCAAATGCCTTAATTTCCTACAGCATCAGCAAAAG
ACCTAGGAACTAACCCTATTTAACTCTCACCTAAGAGCGCGCACCTTATTCCCACCGTGACTAA
CTGGCTGGAAATAGAAGCTCTGCTTCTACTCAGTGTCACTGTGTTTCATAGTGCTGTGTGTGCT
GTGCTGTGCTGTGCTGTGCTGTGTGTGCTGTGCTGTGCTGTGCTGTACTGTGCTGTACTGTGCT
GTGCTGTGCTGTGTGCGCTGGGCTTTATTTTGGTTTG

hide sequence

RefSeq Acc Id:

XM_006255636 ⟹ XP_006255698

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	56,842,203 - 56,866,115 (-)	NCBI
mRatBN7.2	19	39,933,156 - 39,956,883 (-)	NCBI
Rnor_6.0	19	44,187,517 - 44,212,147 (-)	NCBI
Rnor_5.0	19	54,979,589 - 55,017,852 (-)	NCBI

Sequence:

show sequence

TGTTTTTTTAAGATTTATTTTTATTATTAATTATGTATGTGTGCATTAGAGTGCAGGTGCCCTC
TGAGGCCAGAGATGTTGGGTCCCTTAGAGCCGGAGTTACAGACATTTGTAAGCTACCCAACATA
GATGCTGAGAAACAAAGTCAGCCCTACGAGAATAGGGTGTGCTCTTAACTCCTAAGCCAACTTT
CCAGTCCCATCCGTGGTCATAATCTTTAACAGATGTATATTAACGTCTGTTCAGTACGAGGTAT
TGTTCTGAAATACTGGAAATACCAGGGAGCAAAAATCAAATCACTACTTCCATAGAAACATTTT
CTTTCAGGCTTATTGGGGAGTTGAGGGAGAAGCAGATCAAGTGCATGTTCCTTTTTGGTGGCAG
CACACTCATGCACAAGGCAGGGTAAGAGGGCTGCAGTAGACACACAGTAGACAAGAGACATGGC
TCAGTGCTGTGAGTGACTACGGCTCTTATAGAGGACTGCGGTTTGGTACCCAGCATCAATGTCA
GGCAGCTGGCAACCTGAGATCCAGTTCCTTCCTCATGGCCTTTTCTAGCTGCCTTGGTCATTTG
CATGCTCTTTTGTGCATAAATTGATAGAGGCATGGGCACATAAATCTTTTAAAAAATATTTATT
ACCCCTGAGAGAAATAAGAGGCAGATCATCCAAGCCCATGATAATCATACAGGATATGTTGTGA
CAGAGGTGAGAAACTGTCAGAGGATCTGCTTATAGTTCTATTCAGAATTCTGGTGAGTTGCGAG
CTATATCGGTTTCATAGCTCTACTTTGGGAGGCAGCTTCCTCCCTTCACATCTTGGCTGTGGAA
CTGAGCTACGGTGACTCTGTTCCCAGAGACTACAAAGACCAGCGTGCTTTGCGGGCGGGGCTTT
AAAGGAGCTGTCCTTTAGGGCGTCACTTCCGCAGCGCAGCCAGGTTCTGCGACCAGCGTGGCGG
CAGAGGGAGAGGTTGCGCCTCAGCTCCAGCTTCACCTATGTGGACCGCAGATGAGATTGCGCAG
CTGTGCTATGCACACTACATCAAACTGCCCAAGCAGGGGAAGCCTGAGCCAAACCGTGAGTGGA
CTCTGTTGGCGGCTGTGGTGAAAATACAGACTCCAGCTAACCAAGCATGTGACACCCCTGATAA
GCAGATACAAGTGACAAAGGAAGTTGTCTCAATGGGAACAGGAACAAAATGCATAGGCCAGTCC
AAGATGAGAGAGAGCGGAGACATCCTCAATGACAGCCATGCTGAGGTCATAGCCAGAAGGAGTT
TCCAGAGGTACATCCTCCATCAGCTCCATGTGGCGGCCGTCCTAAAGGAAGACAGCATCTTCCT
TCCTGGCACTCAGAGAGGACTGTGGAGGCTCAGACCTGACCTGTCTTTTGTGTTTTTCTCTAGC
CACACACCCTGTGGGGACGCCTCCATCATTCCAAAGCTTGAGTTTGAAGAACAGCCTTGCTGTC
CTGTCATCAGAAATTGGGCCAACAACTCACCTGGAGAAGGGAGCGAGACTCTAGAAGGTTCTAG
AAATAAAAGGAGCTGTGAAGGCCCTGACAGTCCTGTAGCCAAGAAGAAAAGGCTTGGAACACCT
GCTGGTTCCCTCTCCGATTGTGTAGCTCACCATGGGGCACAGGAAAGTGGTCCAGCCAAACCAG
ATGCCAGCAGCTCTGGTCTCACCAAGGAGGAACTGGATGCTGTCAATGGAACAGCTTCCGGTAG
CTTCAAAGTGGTGGACATATACAGAACGGGAGCCAAGTGTGTTCCTGGAGAAACTGGAGACTTG
AGAAAGCCAGGTGCTGCCTATCACCAGGTGGGGCTACTTCGTGTGAAGCCTGGCCGGGGAGACA
GGACATGCTCCATGTCCTGTAGTGACAAGATGGCGAGGTGGAATGTCCTTGGATGCCAGGGCGC
ACTGCTAATGCACTTCCTGGAGAAGCCCATCTACCTGTCAGCCGTGGTCATCGGGCAGTGCCCA
TACAGCCAGGAAGCCATGAGGAGAGCACTGACGGGCAGGTGTCAGGAAACCTTGGTTTTACCCA
GAGGCTTTGAAGTTCAAGAGCTGAAAATACAGCAGTCGAGTTTGCTCTTTGAACAGAGCCGCTG
TGCAGTCCACAGGAAAAGAGGGGACAGTCCAGGCCGACTCGTCCCTTGTGGGGCAGCTATCAGC
TGGAGTGCTGTTCCTCAGCAGCCTTTGGATGTCACAGCCAATGGTTTCCCACAGGGAACAACGA
AGAAAGAAATCGGAAGCCCTCGGGCCAGATCCCGAATCAGCAAGGTGGAACTCTTTAGATCATT
CCAGAAGCTGCTGAGCTGCATTGCAGAAGACGAGCGGCCGGACTCCGTCAGGGTGCAGAAGCTG
GACACCTATCAGGAGTACAAGGAGGCCGCGTCTGCCTACCAGGAAGCCTGGAGTGCACTCCGGA
GGGTACAACCGTTTTCGTCCTGGATCAGAAACCCACCCAACTACCACCAATTTAAATGACCCGC
TGGTATCAGGACCCTTCACAGTATTTGCCCCTCCCTCCATGCTGAGCAAACCTCTGCTTTTCTG
TTGGTTAAACCCCAAGGAGAAAGAGATGCCTTCTCCGAGAGCGCTGCCCCTCTTTGGTGTCATA
AATGGAACCCAGAACCTCATCAGACCGCAGCAGCTCCCTGCTAAGTAGCCTCAGAAACGACCTT
GGTATCGGCCTTCAGCTGTGTCTGATTGGTTCGGAACACACGGCATCAGAGTTTGGAACGTGAT
GCTTTCAGAGTGATCTGCAGCAGCTCTGCTTTAATCTTCTTACATTGATTCTGCAAGTGTGCAT
TGGGCTGAAATCATCTCAGAATGATGGGAACTCCACAGCCTTTCATCCTGCGGTTGAGAATGTG
TCTCAGATTCCCAGCCGCCCTTTGAGAACCATCATTCCCAGTCCTCAGCCACCAGATGTGGTTG
AAGTTAACTTTACCTCAGGCTCAGCACAGGGCTAGCCTTGGAAAGCTCTGTTCTCAGTCAACTT
TACCTCAGGCTCAGCACAGGGCTAGCCTTGGAAAGCTCTGTTCTCAGTTACCAAGAAAGGTCTG
TTTGTTTGTAGCCTACACTGTCCTTGGCTTTCAGTCCTTCCAAGTACCAAGATTATAGGCATAA
ACCGCCATCATAGCTAGCACAAGATAGTCTCTATGTCTCTGTCTCTGTCTCCTCCTCCTCCCCC
TATCCCCACCTTTTACTTGAGACAAGGCTGGCCTTGAACTCAACAAGCAGCCAAGGATGACCTT
GGGCTCTGATCTTTTCATCTCTGACTCCTAATGTAACACCGTACTTTGCTTCCAAGATTTTCTT
CTGACCAGTGTTGTGAGGGCCACCATAATCTTGTAACTGCCAGTAGCCACCATCTTTTCCTGCC
ACACAGAGACAGCCAGTGGAGAATGAAGGTGGCAAAGAAGAAAATGGCCAGAATAGCCAAAGCC
TGGGGACCCAGCTTGCACCCAAACTACAAGAGACAAAGGCCTGGTTTGATTGTCTTTAGCTATT
TATGGGGCCCACACATGCTGTGGTGTGTGTGTGTGGTAAGCACCTGTATCAGCTGAGCAGTCCT
ACCAGGTGCCTGCTGCTTAGATCAGATTGTTTTCTTGTTAACTCAGTTCCCAAATGCCTTAATT
TCCTACAGCATCAGCAAAAGACCTAGGAACTAACCCTATTTAACTCTCACCTAAGAGCGCGCAC
CTTATTCCCACCGTGACTAACTGGCTGGAAATAGAAGCTCTGCTTCTACTCAGTGTCACTGTGT
TTCATAGTGCTGTGTGTGCTGTGCTGTGCTGTGCTGTGCTGTGTGTGCTGTGCTGTGCTGTGCT
GTACTGTGCTGTACTGTGCTGTGCTGTGCTGTGTGCGCTGGGCTTTATTTTGGTTTG

hide sequence

RefSeq Acc Id:

XM_006255638 ⟹ XP_006255700

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	56,842,203 - 56,864,178 (-)	NCBI
mRatBN7.2	19	39,932,951 - 39,954,928 (-)	NCBI
Rnor_6.0	19	44,187,575 - 44,209,236 (-)	NCBI
Rnor_5.0	19	54,979,589 - 55,017,852 (-)	NCBI

Sequence:

show sequence

GCCAAACCGTGAGTGGACTCTGTTGGCGGCTGTGGTGAAAATACAGACTCCAGCTAACCAAGCA
TGTGACACCCCTGATAAGCAGATACAAGGTGAGAGAGACCCTTTCTCCCTGTCAGCAACCACAG
TACTGGTCGGAGAGTGCCCTGTGGGATGCGAACTATAATGTGACAAAGGAAGTTGTCTCAATGG
GAACAGGAACAAAATGCATAGGCCAGTCCAAGATGAGAGAGAGCGGAGACATCCTCAATGACAG
CCATGCTGAGGTCATAGCCAGAAGGAGTTTCCAGAGGTACATCCTCCATCAGCTCCATGTGGCG
GCCGTCCTAAAGGAAGACAGCATCTTCCTTCCTGGCACTCAGAGAGGACTGTGGAGGCTCAGAC
CTGACCTGTCTTTTGTGTTTTTCTCTAGCCACACACCCTGTGGGGACGCCTCCATCATTCCAAA
GCTTGAGTTTGAAGAACAGCCTTGCTGTCCTGTCATCAGAAATTGGGCCAACAACTCACCTGGA
GAAGGGAGCGAGACTCTAGAAGGTTCTAGAAATAAAAGGAGCTGTGAAGGCCCTGACAGTCCTG
TAGCCAAGAAGAAAAGGCTTGGAACACCTGCTGGTTCCCTCTCCGATTGTGTAGCTCACCATGG
GGCACAGGAAAGTGGTCCAGCCAAACCAGATGCCAGCAGCTCTGGTCTCACCAAGGAGGAACTG
GATGCTGTCAATGGAACAGCTTCCGGTAGCTTCAAAGTGGTGGACATATACAGAACGGGAGCCA
AGTGTGTTCCTGGAGAAACTGGAGACTTGAGAAAGCCAGGTGCTGCCTATCACCAGGTGGGGCT
ACTTCGTGTGAAGCCTGGCCGGGGAGACAGGACATGCTCCATGTCCTGTAGTGACAAGATGGCG
AGGTGGAATGTCCTTGGATGCCAGGGCGCACTGCTAATGCACTTCCTGGAGAAGCCCATCTACC
TGTCAGCCGTGGTCATCGGGCAGTGCCCATACAGCCAGGAAGCCATGAGGAGAGCACTGACGGG
CAGGTGTCAGGAAACCTTGGTTTTACCCAGAGGCTTTGAAGTTCAAGAGCTGAAAATACAGCAG
TCGAGTTTGCTCTTTGAACAGAGCCGCTGTGCAGTCCACAGGAAAAGAGGGGACAGTCCAGGCC
GACTCGTCCCTTGTGGGGCAGCTATCAGCTGGAGTGCTGTTCCTCAGCAGCCTTTGGATGTCAC
AGCCAATGGTTTCCCACAGGGAACAACGAAGAAAGAAATCGGAAGCCCTCGGGCCAGATCCCGA
ATCAGCAAGGTGGAACTCTTTAGATCATTCCAGAAGCTGCTGAGCTGCATTGCAGAAGACGAGC
GGCCGGACTCCGTCAGGGTGCAGAAGCTGGACACCTATCAGGAGTACAAGGAGGCCGCGTCTGC
CTACCAGGAAGCCTGGAGTGCACTCCGGAGGGTACAACCGTTTTCGTCCTGGATCAGAAACCCA
CCCAACTACCACCAATTTAAATGACCCGCTGGTATCAGGACCCTTCACAGTATTTGCCCCTCCC
TCCATGCTGAGCAAACCTCTGCTTTTCTGTTGGTTAAACCCCAAGGAGAAAGAGATGCCTTCTC
CGAGAGCGCTGCCCCTCTTTGGTGTCATAAATGGAACCCAGAACCTCATCAGACCGCAGCAGCT
CCCTGCTAAGTAGCCTCAGAAACGACCTTGGTATCGGCCTTCAGCTGTGTCTGATTGGTTCGGA
ACACACGGCATCAGAGTTTGGAACGTGATGCTTTCAGAGTGATCTGCAGCAGCTCTGCTTTAAT
CTTCTTACATTGATTCTGCAAGTGTGCATTGGGCTGAAATCATCTCAGAATGATGGGAACTCCA
CAGCCTTTCATCCTGCGGTTGAGAATGTGTCTCAGATTCCCAGCCGCCCTTTGAGAACCATCAT
TCCCAGTCCTCAGCCACCAGATGTGGTTGAAGTTAACTTTACCTCAGGCTCAGCACAGGGCTAG
CCTTGGAAAGCTCTGTTCTCAGTCAACTTTACCTCAGGCTCAGCACAGGGCTAGCCTTGGAAAG
CTCTGTTCTCAGTTACCAAGAAAGGTCTGTTTGTTTGTAGCCTACACTGTCCTTGGCTTTCAGT
CCTTCCAAGTACCAAGATTATAGGCATAAACCGCCATCATAGCTAGCACAAGATAGTCTCTATG
TCTCTGTCTCTGTCTCCTCCTCCTCCCCCTATCCCCACCTTTTACTTGAGACAAGGCTGGCCTT
GAACTCAACAAGCAGCCAAGGATGACCTTGGGCTCTGATCTTTTCATCTCTGACTCCTAATGTA
ACACCGTACTTTGCTTCCAAGATTTTCTTCTGACCAGTGTTGTGAGGGCCACCATAATCTTGTA
ACTGCCAGTAGCCACCATCTTTTCCTGCCACACAGAGACAGCCAGTGGAGAATGAAGGTGGCAA
AGAAGAAAATGGCCAGAATAGCCAAAGCCTGGGGACCCAGCTTGCACCCAAACTACAAGAGACA
AAGGCCTGGTTTGATTGTCTTTAGCTATTTATGGGGCCCACACATGCTGTGGTGTGTGTGTGTG
GTAAGCACCTGTATCAGCTGAGCAGTCCTACCAGGTGCCTGCTGCTTAGATCAGATTGTTTTCT
TGTTAACTCAGTTCCCAAATGCCTTAATTTCCTACAGCATCAGCAAAAGACCTAGGAACTAACC
CTATTTAACTCTCACCTAAGAGCGCGCACCTTATTCCCACCGTGACTAACTGGCTGGAAATAGA
AGCTCTGCTTCTACTCAGTGTCACTGTGTTTCATAGTGCTGTGTGTGCTGTGCTGTGCTGTGCT
GTGCTGTGTGTGCTGTGCTGTGCTGTGC

hide sequence

RefSeq Acc Id:

XM_008772535 ⟹ XP_008770757

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	56,825,153 - 56,866,136 (-)	NCBI
mRatBN7.2	19	39,918,083 - 39,956,886 (-)	NCBI
Rnor_6.0	19	44,172,496 - 44,212,147 (-)	NCBI

Sequence:

show sequence

TGTTTTTTTAAGATTTATTTTTATTATTAATTATGTATGTGTGCATTAGAGTGCAGGTGCCCTC
TGAGGCCAGAGATGTTGGGTCCCTTAGAGCCGGAGTTACAGACATTTGTAAGCTACCCAACATA
GATGCTGAGAAACAAAGTCAGCCCTACGAGAATAGGGTGTGCTCTTAACTCCTAAGCCAACTTT
CCAGTCCCATCCGTGGTCATAATCTTTAACAGATGTATATTAACGTCTGTTCAGTACGAGGTAT
TGTTCTGAAATACTGGAAATACCAGGGAGCAAAAATCAAATCACTACTTCCATAGAAACATTTT
CTTTCAGGCTTATTGGGGAGTTGAGGGAGAAGCAGATCAAGTGCATGTTCCTTTTTGGTGGCAG
CACACTCATGCACAAGGCAGGGTAAGAGGGCTGCAGTAGACACACAGTAGACAAGAGACATGGC
TCAGTGCTGTGAGTGACTACGGCTCTTATAGAGGACTGCGGTTTGGTACCCAGCATCAATGTCA
GGCAGCTGGCAACCTGAGATCCAGTTCCTTCCTCATGGCCTTTTCTAGCTGCCTTGGTCATTTG
CATGCTCTTTTGTGCATAAATTGATAGAGGCATGGGCACATAAATCTTTTAAAAAATATTTATT
ACCCCTGAGAGAAATAAGAGGCAGATCATCCAAGCCCATGATAATCATACAGGATATGTTGTGA
CAGAGGTGAGAAACTGTCAGAGGATCTGCTTATAGTTCTATTCAGAATTCTGGTGAGTTGCGAG
CTATATCGGTTTCATAGCTCTACTTTGGGAGGCAGCTTCCTCCCTTCACATCTTGGCTGTGGAA
CTGAGCTACGGTGACTCTGTTCCCAGAGACTACAAAGACCAGCGTGCTTTGCGGGCGGGGCTTT
AAAGGAGCTGTCCTTTAGGGCGTCACTTCCGCAGCGCAGCCAGGTTCTGCGACCAGCGTGGCGG
CAGAGGGAGAGGTTGCGGTGCGTGGATAGCAGGGTGTCAGTGTCTCCGGATCGGCGTCTCGGGC
CTCAGCTCCAGCTTCACCTATGTGGACCGCAGATGAGATTGCGCAGCTGTGCTATGCACACTAC
ATCAAACTGCCCAAGCAGGGGAAGCCTGAGCCAAACCGTGAGTGGACTCTGTTGGCGGCTGTGG
TGAAAATACAGACTCCAGCTAACCAAGCATGTGACACCCCTGATAAGCAGATACAAGTGACAAA
GGAAGTTGTCTCAATGGGAACAGGAACAAAATGCATAGGCCAGTCCAAGATGAGAGAGAGCGGA
GACATCCTCAATGACAGCCATGCTGAGGTCATAGCCAGAAGGAGTTTCCAGAGGTACATCCTCC
ATCAGCTCCATGTGGCGGCCGTCCTAAAGGAAGACAGCATCTTCCTTCCTGGCACTCAGAGAGG
ACTGTGGAGGCTCAGACCTGACCTGTCTTTTGTGTTTTTCTCTAGCCACACACCCTGTGGGGAC
GCCTCCATCATTCCAAAGCTTGAGTTTGAAGAACAGCCTTGCTGTCCTGTCATCAGAAATTGGG
CCAACAACTCACCTGGAGAAGGGAGCGAGACTCTAGAAGGTTCTAGAAATAAAAGGAGCTGTGA
AGGCCCTGACAGTCCTGTAGCCAAGAAGAAAAGGCTTGGAACACCTGCTGGTTCCCTCTCCGAT
TGTGTAGCTCACCATGGGGCACAGGAAAGTGGTCCAGCCAAACCAGATGCCAGCAGCTCTGGTC
TCACCAAGGAGGAACTGGATGCTGTCAATGGAACAGCTTCCGGTAGCTTCAAAGTGGTGGACAT
ATACAGAACGGGAGCCAAGTGTGTTCCTGGAGAAACTGGAGACTTGAGAAAGCCAGGTGCTGCC
TATCACCAGGTGGGGCTACTTCGTGTGAAGCCTGGCCGGGGAGACAGGACATGCTCCATGTCCT
GTAGTGACAAGATGGCGAGGTGGAATGTCCTTGGATGCCAGGGCGCACTGCTAATGCACTTCCT
GGAGAAGCCCATCTACCTGTCAGCCGTGGTCATCGGGCAGTGCCCATACAGCCAGGAAGCCATG
AGGAGAGCACTGACGGGCAGGTGTCAGGAAACCTTGGTTTTACCCAGAGGCTTTGAAGTTCAAG
AGCTGAAAATACAGCAGTCGAGTTTGCTCTTTGAACAGAGCCGCTGTGCAGTCCACAGGAAAAG
AGGGGACAGTCCAGGCCGACTCGTCCCTTGTGGGGCAGCTATCAGCTGGAGTGCTGTTCCTCAG
CAGCCTTTGGATGTCACAGCCAATGGTTTCCCACAGGGAACAACGAAGAAAGAAATCGGAAGCC
CTCGGGCCAGATCCCGAATCAGCAAGGTGGAACTCTTTAGATCATTCCAGAAGCTGCTGAGCTG
CATTGCAGAAGACGAGCGGCCGGACTCCGTCAGGTCCTTCCTTAGATCACGGGGTTATACTGGT
TTCCTTATCCTGATGACTGACGTAAGGCTTCAGCCACCAACACCGTCCGTCTGTGGAAGATTCA
GCTCTCAATGTGAAGCTCCCTTAATCCGAAATTTCTGAAATAACTGACTCTCTGGATGGGCCGG
AGAGAGGACTCAGCAATTGAGAGCACTGGCTGCTCTTGCAGGGGACCCAGATTCTGTTCCCAGC
ACCCACATGGCAGTTCACAACTGTCCAGAAATCCCCACAGTTAAGGTAAGAAAACCCTATATAC
AGTGACTTCTGAAACAGAAACCACCAGCCTTATTCAGCAACTGAAATGTGGCACCTGAAGTGAG
ATGCACAAGATTTCACAATAAAGCAAGTTTGGTTACATGTTGAAATGGCAACTCGTGTAGACCA
GGCTGGCCTTGAATTCA

hide sequence

RefSeq Acc Id:

XM_039098001 ⟹ XP_038953929

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	56,842,203 - 56,866,112 (-)	NCBI
mRatBN7.2	19	39,933,156 - 39,956,864 (-)	NCBI

RefSeq Acc Id:

XM_039098003 ⟹ XP_038953931

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	56,842,203 - 56,866,136 (-)	NCBI
mRatBN7.2	19	39,932,951 - 39,956,886 (-)	NCBI

RefSeq Acc Id:

XM_063278298 ⟹ XP_063134368

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	56,825,153 - 56,866,122 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001103081	(Get FASTA)	NCBI Sequence Viewer
	NP_001383775	(Get FASTA)	NCBI Sequence Viewer
	XP_006255697	(Get FASTA)	NCBI Sequence Viewer
	XP_006255698	(Get FASTA)	NCBI Sequence Viewer
	XP_006255700	(Get FASTA)	NCBI Sequence Viewer
	XP_008770757	(Get FASTA)	NCBI Sequence Viewer
	XP_038953929	(Get FASTA)	NCBI Sequence Viewer
	XP_038953931	(Get FASTA)	NCBI Sequence Viewer
	XP_063134368	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL92599	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000026309
	ENSRNOP00000026309.3
	ENSRNOP00000080487
	ENSRNOP00000080487.1
	ENSRNOP00000089520.1

RefSeq Acc Id:	NP_001103081 ⟸ NM_001109611
- Peptide Label:	isoform 1
- UniProtKB:	D4ADL5 (UniProtKB/TrEMBL), A6IZC1 (UniProtKB/TrEMBL), A0A8I6GI65 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWTADEIAQLCYAHYIKLPKQGKPEPNREWTLLAAVVKIQTPANQACDTPDKQIQVTKEVVSMG TGTKCIGQSKMRESGDILNDSHAEVIARRSFQRYILHQLHVAAVLKEDSIFLPGTQRGLWRLRP DLSFVFFSSHTPCGDASIIPKLEFEEQPCCPVIRNWANNSPGEGSETLEGSRNKRSCEGPDSPV AKKKRLGTPAGSLSDCVAHHGAQESGPAKPDASSSGLTKEELDAVNGTASGSFKVVDIYRTGAK CVPGETGDLRKPGAAYHQVGLLRVKPGRGDRTCSMSCSDKMARWNVLGCQGALLMHFLEKPIYL SAVVIGQCPYSQEAMRRALTGRCQETLVLPRGFEVQELKIQQSSLLFEQSRCAVHRKRGDSPGR LVPCGAAISWSAVPQQPLDVTANGFPQGTTKKEIGSPRARSRISKVELFRSFQKLLSCIAEDER PDSVRVQKLDTYQEYKEAASAYQEAWSALRRVQPFSSWIRNPPNYHQFK hide sequence

RefSeq Acc Id:	XP_006255698 ⟸ XM_006255636
- Peptide Label:	isoform X1
- UniProtKB:	D4ADL5 (UniProtKB/TrEMBL), A6IZC1 (UniProtKB/TrEMBL), A0A8I6GI65 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWTADEIAQLCYAHYIKLPKQGKPEPNREWTLLAAVVKIQTPANQACDTPDKQIQVTKEVVSMG TGTKCIGQSKMRESGDILNDSHAEVIARRSFQRYILHQLHVAAVLKEDSIFLPGTQRGLWRLRP DLSFVFFSSHTPCGDASIIPKLEFEEQPCCPVIRNWANNSPGEGSETLEGSRNKRSCEGPDSPV AKKKRLGTPAGSLSDCVAHHGAQESGPAKPDASSSGLTKEELDAVNGTASGSFKVVDIYRTGAK CVPGETGDLRKPGAAYHQVGLLRVKPGRGDRTCSMSCSDKMARWNVLGCQGALLMHFLEKPIYL SAVVIGQCPYSQEAMRRALTGRCQETLVLPRGFEVQELKIQQSSLLFEQSRCAVHRKRGDSPGR LVPCGAAISWSAVPQQPLDVTANGFPQGTTKKEIGSPRARSRISKVELFRSFQKLLSCIAEDER PDSVRVQKLDTYQEYKEAASAYQEAWSALRRVQPFSSWIRNPPNYHQFK hide sequence

RefSeq Acc Id:	XP_006255697 ⟸ XM_006255635
- Peptide Label:	isoform X1
- UniProtKB:	D4ADL5 (UniProtKB/TrEMBL), A6IZC1 (UniProtKB/TrEMBL), A0A8I6GI65 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWTADEIAQLCYAHYIKLPKQGKPEPNREWTLLAAVVKIQTPANQACDTPDKQIQVTKEVVSMG TGTKCIGQSKMRESGDILNDSHAEVIARRSFQRYILHQLHVAAVLKEDSIFLPGTQRGLWRLRP DLSFVFFSSHTPCGDASIIPKLEFEEQPCCPVIRNWANNSPGEGSETLEGSRNKRSCEGPDSPV AKKKRLGTPAGSLSDCVAHHGAQESGPAKPDASSSGLTKEELDAVNGTASGSFKVVDIYRTGAK CVPGETGDLRKPGAAYHQVGLLRVKPGRGDRTCSMSCSDKMARWNVLGCQGALLMHFLEKPIYL SAVVIGQCPYSQEAMRRALTGRCQETLVLPRGFEVQELKIQQSSLLFEQSRCAVHRKRGDSPGR LVPCGAAISWSAVPQQPLDVTANGFPQGTTKKEIGSPRARSRISKVELFRSFQKLLSCIAEDER PDSVRVQKLDTYQEYKEAASAYQEAWSALRRVQPFSSWIRNPPNYHQFK hide sequence

RefSeq Acc Id:	XP_006255700 ⟸ XM_006255638
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6GI65 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGTGTKCIGQSKMRESGDILNDSHAEVIARRSFQRYILHQLHVAAVLKEDSIFLPGTQRGLWRL RPDLSFVFFSSHTPCGDASIIPKLEFEEQPCCPVIRNWANNSPGEGSETLEGSRNKRSCEGPDS PVAKKKRLGTPAGSLSDCVAHHGAQESGPAKPDASSSGLTKEELDAVNGTASGSFKVVDIYRTG AKCVPGETGDLRKPGAAYHQVGLLRVKPGRGDRTCSMSCSDKMARWNVLGCQGALLMHFLEKPI YLSAVVIGQCPYSQEAMRRALTGRCQETLVLPRGFEVQELKIQQSSLLFEQSRCAVHRKRGDSP GRLVPCGAAISWSAVPQQPLDVTANGFPQGTTKKEIGSPRARSRISKVELFRSFQKLLSCIAED ERPDSVRVQKLDTYQEYKEAASAYQEAWSALRRVQPFSSWIRNPPNYHQFK hide sequence

RefSeq Acc Id:	XP_008770757 ⟸ XM_008772535
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZQD8 (UniProtKB/TrEMBL), A0A8I6GI65 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWTADEIAQLCYAHYIKLPKQGKPEPNREWTLLAAVVKIQTPANQACDTPDKQIQVTKEVVSMG TGTKCIGQSKMRESGDILNDSHAEVIARRSFQRYILHQLHVAAVLKEDSIFLPGTQRGLWRLRP DLSFVFFSSHTPCGDASIIPKLEFEEQPCCPVIRNWANNSPGEGSETLEGSRNKRSCEGPDSPV AKKKRLGTPAGSLSDCVAHHGAQESGPAKPDASSSGLTKEELDAVNGTASGSFKVVDIYRTGAK CVPGETGDLRKPGAAYHQVGLLRVKPGRGDRTCSMSCSDKMARWNVLGCQGALLMHFLEKPIYL SAVVIGQCPYSQEAMRRALTGRCQETLVLPRGFEVQELKIQQSSLLFEQSRCAVHRKRGDSPGR LVPCGAAISWSAVPQQPLDVTANGFPQGTTKKEIGSPRARSRISKVELFRSFQKLLSCIAEDER PDSVRSFLRSRGYTGFLILMTDVRLQPPTPSVCGRFSSQCEAPLIRNF hide sequence

RefSeq Acc Id:

ENSRNOP00000026309 ⟸ ENSRNOT00000026309

RefSeq Acc Id:	XP_038953931 ⟸ XM_039098003
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038953929 ⟸ XM_039098001
- Peptide Label:	isoform X1
- UniProtKB:	D4ADL5 (UniProtKB/TrEMBL), A6IZC1 (UniProtKB/TrEMBL), A0A8I6GI65 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000089520 ⟸ ENSRNOT00000105306

RefSeq Acc Id:

ENSRNOP00000080487 ⟸ ENSRNOT00000110420

RefSeq Acc Id:	NP_001383775 ⟸ NM_001396846
- Peptide Label:	isoform 2
- UniProtKB:	A0A8I6GI65 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063134368 ⟸ XM_063278298
- Peptide Label:	isoform X5

Protein Domains

A to I editase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4ADL5-F1-model_v2	AlphaFold	D4ADL5	1-497	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701157

Promoter ID:

EPDNEW_R11681

Type:

multiple initiation site

Name:

Adat1_1

Description:

adenosine deaminase, tRNA-specific 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	19	44,211,209 - 44,211,269	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1591020	AgrOrtholog
BioCyc Gene	G2FUF-5635	BioCyc
Ensembl Genes	ENSRNOG00000019434	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000026309	ENTREZGENE
	ENSRNOT00000026309.6	UniProtKB/TrEMBL
	ENSRNOT00000105306.1	UniProtKB/TrEMBL
	ENSRNOT00000110420.1	UniProtKB/TrEMBL
InterPro	A_deamin	UniProtKB/TrEMBL
KEGG Report	rno:690810	UniProtKB/TrEMBL
NCBI Gene	690810	ENTREZGENE
PANTHER	TRNA-SPECIFIC ADENOSINE DEAMINASE 1	UniProtKB/TrEMBL
	TRNA-SPECIFIC ADENOSINE DEAMINASE 1	UniProtKB/TrEMBL
Pfam	A_deamin	UniProtKB/TrEMBL
PhenoGen	Adat1	PhenoGen
PROSITE	A_DEAMIN_EDITASE	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000019434	RatGTEx
SMART	ADEAMc	UniProtKB/TrEMBL
UniProt	A0A8I5ZQD8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GI65	ENTREZGENE, UniProtKB/TrEMBL
	A6IZC1	ENTREZGENE, UniProtKB/TrEMBL
	D4ADL5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-06	Adat1	adenosine deaminase, tRNA-specific 1	LOC690810	similar to adenosine deaminase, tRNA-specific 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-01-09	LOC690810	similar to adenosine deaminase, tRNA-specific 1	LOC687268	similar to adenosine deaminase, tRNA-specific 1	Data merged from RGD:1587711	1643240	APPROVED
2006-11-20	LOC690810	similar to adenosine deaminase, tRNA-specific 1			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC687268	similar to adenosine deaminase, tRNA-specific 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar