Fut4-ps1 (fucosyltransferase 4, pseudogene 1) - Rat Genome Database

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Gene: Fut4-ps1 (fucosyltransferase 4, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Fut4-ps1
Name: fucosyltransferase 4, pseudogene 1
RGD ID: 1588473
Description: Predicted to enable 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase activity. Predicted to be involved in N-glycan fucosylation; protein glycosylation; and sphingolipid metabolic process. Predicted to be located in Golgi apparatus and extracellular region. Orthologous to human FUT6 (fucosyltransferase 6); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine (ortholog); acrylamide (ortholog); antirheumatic drug (ortholog).
Type: pseudo
RefSeq Status: MODEL
Previously known as: alpha-(1,3)-fucosyltransferase 6; LOC367454; similar to Alpha-(1,3)-fucosyltransferase (Galactoside 3-L-fucosyltransferase) (Fucosyltransferase 6) (FUCT-VI)
RGD Orthologs
Human
Bonobo
Dog
Pig
Alliance Genes
More Info more info ...
Related Functional Gene: Fut4  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr891,656,732 - 1,659,085 (+)NCBIGRCr8
mRatBN7.291,569,605 - 1,572,022 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0910,309,050 - 10,318,899 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.099,306,130 - 9,316,513 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera96,937,227 - 6,946,997 (-)NCBICelera
Cytogenetic Map9q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:9363434   PMID:9451035   PMID:17604274   PMID:19199708   PMID:23376485  


Genomics

Comparative Map Data
Fut4-ps1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr891,656,732 - 1,659,085 (+)NCBIGRCr8
mRatBN7.291,569,605 - 1,572,022 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0910,309,050 - 10,318,899 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.099,306,130 - 9,316,513 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera96,937,227 - 6,946,997 (-)NCBICelera
Cytogenetic Map9q11NCBI
FUT6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38195,830,408 - 5,839,702 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl195,830,408 - 5,839,722 (-)EnsemblGRCh38hg38GRCh38
GRCh37195,830,419 - 5,839,713 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36195,781,637 - 5,790,742 (-)NCBINCBI36Build 36hg18NCBI36
Build 34195,767,403 - 5,790,703NCBI
Celera195,769,631 - 5,778,704 (-)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef195,590,485 - 5,599,559 (-)NCBIHuRef
CHM1_1195,830,900 - 5,839,974 (-)NCBICHM1_1
T2T-CHM13v2.0195,817,873 - 5,827,142 (-)NCBIT2T-CHM13v2.0
FUT6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22010,225,322 - 10,228,043 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1199,451,074 - 9,454,236 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0194,846,423 - 4,857,328 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1195,778,452 - 5,789,906 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl195,779,200 - 5,780,389 (-)Ensemblpanpan1.1panPan2
FUT5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12054,216,560 - 54,238,103 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2054,224,789 - 54,225,841 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2053,952,213 - 53,953,265 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02054,861,376 - 54,862,428 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2054,861,277 - 54,862,428 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12053,927,739 - 53,928,791 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02054,376,823 - 54,377,874 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02054,605,352 - 54,606,404 (+)NCBIUU_Cfam_GSD_1.0
LOC100513844
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1273,152,451 - 73,171,616 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2273,642,050 - 73,663,391 (-)NCBISscrofa10.2Sscrofa10.2susScr3

Variants

.
Variants in Fut4-ps1
3 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9114209783Rat
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat

Markers in Region
RH140794  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.291,555,393 - 1,555,591 (-)MAPPERmRatBN7.2
Rnor_6.0910,333,059 - 10,333,256NCBIRnor6.0
Rnor_5.099,330,139 - 9,330,336UniSTSRnor5.0
Celera96,961,157 - 6,961,354UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_017596892   ⟹   XP_017452381
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0910,309,050 - 10,318,899 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017603758   ⟹   XP_017459247
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera96,937,227 - 6,946,997 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1588473 AgrOrtholog
BioCyc Gene G2FUF-28515 BioCyc
NCBI Gene 367454 ENTREZGENE
PhenoGen Fut4-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Fut4-ps1  fucosyltransferase 4, pseudogene 1  LOC367454  similar to Alpha-(1,3)-fucosyltransferase (Galactoside 3-L-fucosyltransferase) (Fucosyltransferase 6) (FUCT-VI)  Symbol and Name Changed 1299863 APPROVED
2006-11-19 LOC367454  similar to Alpha-(1,3)-fucosyltransferase (Galactoside 3-L-fucosyltransferase) (Fucosyltransferase 6) (FUCT-VI)      Symbol and Name status set to provisional 70820 PROVISIONAL