Hoxa7 (homeobox A7) - Rat Genome Database

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Gene: Hoxa7 (homeobox A7) Rattus norvegicus
Analyze
Symbol: Hoxa7
Name: homeobox A7
RGD ID: 1587253
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific; DNA-binding transcription factor binding activity; and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including angiogenesis; negative regulation of cell-matrix adhesion; and negative regulation of monocyte differentiation. Predicted to act upstream of or within several processes, including embryonic skeletal system morphogenesis; negative regulation of keratinocyte differentiation; and regulation of transcription by RNA polymerase II. Predicted to be located in nuclear membrane and nucleoplasm. Orthologous to human HOXA7 (homeobox A7); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; gentamycin.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: homeo box A7; homeo box A7 (mapped); homeobox A9; Homeobox gene A7; homeobox protein Hox-1.1; homeobox protein Hox-A7; homeobox protein Hox-A7-like; homeobox protein R5; hox-1.1; Hox1r5; Hoxa7_mapped; Hoxa9; LOC100909678; LOC100911622
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8482,646,342 - 82,652,449 (-)NCBIGRCr8
mRatBN7.2481,315,730 - 81,317,629 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl481,314,625 - 81,317,659 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx486,537,519 - 86,539,409 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0482,312,905 - 82,314,795 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0480,740,052 - 80,741,942 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0482,184,299 - 82,187,890 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl482,183,196 - 82,186,190 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04146,851,130 - 146,854,687 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4480,515,622 - 80,517,521 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera476,206,442 - 76,208,341 (-)NCBICelera
Cytogenetic Map4q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Chromosomal assignment of seven rat homeobox genes to rat chromosomes 3, 4, 7, and 10. Chung SY, etal., Mamm Genome 1993 Sep;4(9):537-40.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:2886401   PMID:7911971   PMID:8264592   PMID:8649375   PMID:9784603   PMID:11435435   PMID:14704364   PMID:17972163   PMID:18973687   PMID:19796622  


Genomics

Comparative Map Data
Hoxa7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8482,646,342 - 82,652,449 (-)NCBIGRCr8
mRatBN7.2481,315,730 - 81,317,629 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl481,314,625 - 81,317,659 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx486,537,519 - 86,539,409 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0482,312,905 - 82,314,795 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0480,740,052 - 80,741,942 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0482,184,299 - 82,187,890 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl482,183,196 - 82,186,190 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04146,851,130 - 146,854,687 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4480,515,622 - 80,517,521 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera476,206,442 - 76,208,341 (-)NCBICelera
Cytogenetic Map4q24NCBI
HOXA7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38727,153,716 - 27,156,675 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl727,153,716 - 27,157,936 (-)EnsemblGRCh38hg38GRCh38
GRCh37727,193,335 - 27,196,294 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36727,159,860 - 27,162,821 (-)NCBINCBI36Build 36hg18NCBI36
Build 34726,967,529 - 26,969,536NCBI
Celera727,182,274 - 27,185,235 (-)NCBICelera
Cytogenetic Map7p15.2NCBI
HuRef727,073,747 - 27,076,708 (-)NCBIHuRef
CHM1_1727,193,051 - 27,196,012 (-)NCBICHM1_1
T2T-CHM13v2.0727,289,707 - 27,297,085 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2727,244,510 - 27,247,471 (-)NCBI
Hoxa7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39652,191,471 - 52,198,757 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl652,191,471 - 52,198,834 (-)EnsemblGRCm39 Ensembl
GRCm38652,215,623 - 52,218,573 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl652,214,491 - 52,221,854 (-)EnsemblGRCm38mm10GRCm38
MGSCv37652,165,622 - 52,168,572 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36652,145,206 - 52,148,156 (-)NCBIMGSCv36mm8
Celera652,737,261 - 52,740,211 (-)NCBICelera
Cytogenetic Map6B3NCBI
cM Map625.4NCBI
Hoxa7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541028,847,893 - 28,851,062 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541028,848,029 - 28,851,069 (-)NCBIChiLan1.0ChiLan1.0
HOXA7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2631,982,932 - 31,987,550 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1780,308,768 - 80,310,610 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0727,799,317 - 27,802,492 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1727,397,888 - 27,402,142 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl727,396,898 - 27,402,142 (-)Ensemblpanpan1.1panPan2
Hoxa7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511884,569,675 - 84,572,760 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364783,782,482 - 3,784,361 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364783,782,476 - 3,784,361 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HOXA7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1845,417,203 - 45,419,101 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11845,417,137 - 45,419,113 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21850,047,209 - 50,052,308 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103226327
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12131,208,988 - 31,215,227 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2131,221,230 - 31,223,278 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
ChlSab1.1 Ensembl2131,212,209 - 31,215,392 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604273,509,101 - 73,524,828 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hoxa7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247393,448,199 - 3,452,717 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247393,448,982 - 3,451,985 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Hoxa7
7 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:82
Count of miRNA genes:73
Interacting mature miRNAs:76
Transcripts:ENSRNOT00000075005
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
61364Iddm2Insulin dependent diabetes mellitus QTL 2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)478885890102684881Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)percent change in mean arterial blood pressure (CMO:0002035)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)percent change in systolic blood pressure (CMO:0000747)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in pulse pressure (CMO:0001882)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)462933508114921294Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44043338885433388Rat
70167Bw22Body weight QTL 223.1body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
724522Bp146Blood pressure QTL 1462.20.0021arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)473630210118630210Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
631556Bp135Blood pressure QTL 1350.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)478881294117676292Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473169846132642728Rat
631651Bp124Blood pressure QTL 1243arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)462879517107879517Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)478878504123878504Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
738015Pia9Pristane induced arthritis QTL 94.50.048joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)480694870125694870Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
631546Bp86Blood pressure QTL 863.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45711443291360801Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)470808386115808386Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)470808386115808386Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)457486946102486946Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
1558651Swd3Spike wave discharge measurement QTL 34.620.000024brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)45843213392991462Rat
1549839Bw52Body weight QTL 520.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658115089733Rat
1549843Bw53Body weight QTL 530.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658103194791Rat
1578657Bss12Bone structure and strength QTL 128.9femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)460220938105220938Rat
1578658Bss13Bone structure and strength QTL 138femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)460220938105220938Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)481192555126192555Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
2302051Pia28Pristane induced arthritis QTL 285.30.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)473630210118630210Rat
2300179Bmd50Bone mineral density QTL 505.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)460928534105928534Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)481006124120102625Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
2312569Pur19Proteinuria QTL 193.40.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)46588210796130297Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
2317586Eae25Experimental allergic encephalomyelitis QTL 259.300000190734863nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)47888281783007655Rat
2317586Eae25Experimental allergic encephalomyelitis QTL 259.300000190734863nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)47888281783007655Rat
2317586Eae25Experimental allergic encephalomyelitis QTL 259.300000190734863nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)47888281783007655Rat
2317586Eae25Experimental allergic encephalomyelitis QTL 259.300000190734863nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis duration (CMO:0001424)47888281783007655Rat
6478743Anxrr40Anxiety related response QTL 400.83076defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
6478772Anxrr49Anxiety related response QTL 490.15488defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44345797688457976Rat
6478684Anxrr30Anxiety related response QTL 300.00087defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44043341485433414Rat
7394826Bw126Body weight QTL 1260.002body mass (VT:0001259)body weight gain (CMO:0000420)46293326987483707Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)436303261103194984Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)43443048482490359Rat
8552807Vie4Viral induced encephalitis QTL 47.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)46293350882490359Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 11 11
Low 1 1 15 9 8 11 3 24 23 11 8
Below cutoff 18 29 28 10 28 6 5

Sequence


RefSeq Acc Id: ENSRNOT00000071729   ⟹   ENSRNOP00000066086
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl481,314,625 - 81,317,659 (-)Ensembl
RefSeq Acc Id: NM_001109233   ⟹   NP_001102703
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8482,646,342 - 82,648,241 (-)NCBI
mRatBN7.2481,315,730 - 81,317,629 (-)NCBI
Rnor_6.0482,184,299 - 82,186,198 (-)NCBI
Rnor_5.04146,851,130 - 146,854,687 (-)NCBI
RGSC_v3.4480,515,622 - 80,517,521 (-)RGD
Celera476,206,442 - 76,208,341 (-)RGD
Sequence:
RefSeq Acc Id: XM_063286512   ⟹   XP_063142582
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8482,646,343 - 82,649,639 (-)NCBI
RefSeq Acc Id: XM_063286514   ⟹   XP_063142584
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8482,646,343 - 82,652,449 (-)NCBI
RefSeq Acc Id: NP_001102703   ⟸   NM_001109233
- UniProtKB: M0R7P7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000066086   ⟸   ENSRNOT00000071729
RefSeq Acc Id: XP_063142584   ⟸   XM_063286514
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063142582   ⟸   XM_063286512
- Peptide Label: isoform X1
Protein Domains
Homeobox

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P09634-F1-model_v2 AlphaFold P09634 1-105 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693050
Promoter ID:EPDNEW_R3575
Type:single initiation site
Name:Hoxa7_1
Description:homeobox A7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0482,186,225 - 82,186,285EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1587253 AgrOrtholog
BioCyc Gene G2FUF-44817 BioCyc
Ensembl Genes ENSRNOG00000046361 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000071729 ENTREZGENE
  ENSRNOT00000071729.3 UniProtKB/TrEMBL
Gene3D-CATH Homeodomain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_antennapedia UniProtKB/TrEMBL
  Homeobox_Antennapedia_CS UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_metazoa UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:500126 UniProtKB/TrEMBL
NCBI Gene 500126 ENTREZGENE
PANTHER HOMEOBOX PROTEIN HOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HOMEOBOX PROTEIN HOX-A7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Homeodomain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Hoxa7 PhenoGen
PRINTS ANTENNAPEDIA UniProtKB/TrEMBL
  HOMEOBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ANTENNAPEDIA UniProtKB/TrEMBL
  HOMEOBOX_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000046361 RatGTEx
SMART HOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A6K0R0_RAT UniProtKB/TrEMBL
  A6K0R1_RAT UniProtKB/TrEMBL
  HXA7_RAT UniProtKB/Swiss-Prot
  M0R7P7 ENTREZGENE, UniProtKB/TrEMBL
  P09634 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Hoxa7  homeobox A7  LOC100911622  homeobox protein Hox-A7-like  Data merged from RGD:6491489 737654 PROVISIONAL
2015-07-29 LOC100911622  homeobox protein Hox-A7-like  LOC100909678  homeobox protein Hox-A7-like  Data merged from RGD:6502374 737654 PROVISIONAL
2012-07-17 Hoxa7  homeobox A7  Hoxa9  homeobox A9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-05 LOC100909678  homeobox protein Hox-A7-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2012-07-05 LOC100911622  homeobox protein Hox-A7-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-03-04 Hoxa9  homeobox A9  Hoxa7  homeo box A7 (mapped)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2007-04-11 Hoxa7  homeo box A7 (mapped)  Hoxa7_mapped  homeo box A7 (mapped)  Data merged from RGD:2815 737654 APPROVED
2006-11-19 Hoxa7  homeo box A7 (mapped)      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-11-17 Hoxa7_mapped  homeo box A7 (mapped)  Hoxa7  homeo box A7  Symbol and Name updated 1556543 APPROVED
2002-06-10 Hoxa7  Homeobox gene A7      Symbol and Name status set to approved 70586 APPROVED