Fam169b (family with sequence similarity 169, member B) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Fam169b (family with sequence similarity 169, member B) Rattus norvegicus
Analyze
Symbol: Fam169b
Name: family with sequence similarity 169, member B
RGD ID: 1585883
Description: Orthologous to human FAM169BP (family with sequence similarity 169 member B, pseudogene); INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: hypothetical protein LOC680906; LOC680906; uncharacterized protein Fam169b
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81131,288,780 - 131,378,548 (+)NCBIGRCr8
mRatBN7.21121,878,670 - 121,968,272 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1121,878,713 - 121,958,470 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01129,254,242 - 129,336,083 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1129,255,396 - 129,334,292 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01130,313,012 - 130,392,159 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41123,056,102 - 123,114,691 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1114,076,719 - 114,158,704 (+)NCBICelera
Cytogenetic Map1q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Fam169b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81131,288,780 - 131,378,548 (+)NCBIGRCr8
mRatBN7.21121,878,670 - 121,968,272 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1121,878,713 - 121,958,470 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01129,254,242 - 129,336,083 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1129,255,396 - 129,334,292 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01130,313,012 - 130,392,159 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41123,056,102 - 123,114,691 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1114,076,719 - 114,158,704 (+)NCBICelera
Cytogenetic Map1q22NCBI
FAM169BP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381598,437,162 - 98,514,336 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1598,441,071 - 98,520,386 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl1598,437,162 - 98,514,382 (-)EnsemblGRCh38hg38GRCh38
GRCh371598,980,391 - 99,057,565 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361596,797,914 - 96,875,134 (-)NCBINCBI36Build 36hg18NCBI36
Celera1575,398,171 - 75,475,245 (-)NCBICelera
Cytogenetic Map15q26.3NCBI
HuRef1575,108,821 - 75,185,983 (-)NCBIHuRef
CHM1_11598,821,961 - 98,899,182 (-)NCBICHM1_1
T2T-CHM13v2.01596,201,545 - 96,278,778 (-)NCBIT2T-CHM13v2.0
Fam169b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39767,923,587 - 68,012,837 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl767,923,587 - 68,012,840 (+)EnsemblGRCm39 Ensembl
GRCm38768,273,839 - 68,363,089 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl768,273,839 - 68,363,092 (+)EnsemblGRCm38mm10GRCm38
MGSCv37775,418,725 - 75,507,975 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36768,174,346 - 68,236,602 (+)NCBIMGSCv36mm8
Celera765,730,746 - 65,819,701 (+)NCBICelera
Cytogenetic Map7CNCBI
cM Map737.49NCBI
Fam169b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541625,886,592 - 26,061,346 (-)NCBIChiLan1.0ChiLan1.0
FAM169BP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21687,982,226 - 88,066,541 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11591,681,639 - 91,729,196 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01577,122,837 - 77,169,640 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11596,308,725 - 96,382,737 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1596,308,725 - 96,356,249 (-)Ensemblpanpan1.1panPan2
LOC608120
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1342,146,398 - 42,242,555 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha344,854,804 - 44,942,158 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0342,564,174 - 42,652,279 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl342,563,903 - 42,652,275 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1342,079,896 - 42,175,981 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0342,310,780 - 42,407,269 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0342,539,406 - 42,626,978 (+)NCBIUU_Cfam_GSD_1.0
FAM169B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11137,199,071 - 137,297,200 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21153,307,038 - 153,427,796 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103231258
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12917,004,304 - 17,046,698 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605929,543,287 - 29,583,560 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam169b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247685,720,560 - 5,793,773 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fam169b
627 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:116
Count of miRNA genes:101
Interacting mature miRNAs:107
Transcripts:ENSRNOT00000040147
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303591Gluco41Glucose level QTL 412blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1102168504147168504Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
2317833Alcrsp19Alcohol response QTL 1912.40.001response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1100979852145979852Rat
4889494Scort2Serum corticosterone level QTL 24.2blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)180592172125592172Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194642644214537671Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)number of 20 x 20 cm floor squares crossed into, out of or within a discrete space in an experimental apparatus (CMO:0001514)183547917128547917Rat
8655649Arrd1Age-related retinal degeneration QTL 14.89retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1100357752183970443Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
9590300Scort16Serum corticosterone level QTL 164.390.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1103111621148111621Rat
631496Bp97Blood pressure QTL 973.08arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1106047847151047847Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)178430536123430536Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118608292241799120Rat
8694370Bw154Body weight QTL 1548.910.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)1103111621148111621Rat
1300158Bp173Blood pressure QTL 1733.48arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1115540693185145286Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
1331751Bp199Blood pressure QTL 1993.60022arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)194494440181830018Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194494440172949803Rat
1300153Bp171Blood pressure QTL 1713.37arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)190664883143200202Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)190532338123479925Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1102813953201278233Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1102813953218753816Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1102813953201278233Rat
1354623Rf46Renal function QTL 463.8blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)1102813953151162766Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)177494165122494165Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
1641897Alcrsp1Alcohol response QTL 1response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1100979852145979852Rat
1598850Bp297Blood pressure QTL 2972.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1121006655166006655Rat
1598866Bp287Blood pressure QTL 2875.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1121006655166006655Rat
61344Bp29Blood pressure QTL 297.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)178350581123350581Rat
61346Rf2Renal disease susceptibility QTL 23.7urine protein amount (VT:0005160)urine protein level (CMO:0000591)199267916144267916Rat
61399Tcat1Tongue tumor resistance QTL 13.3tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 5 mm (CMO:0001879)199267916144267916Rat
70209Niddm23Non-insulin dependent diabetes mellitus QTL 232.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)194494440198324465Rat
2293140Bp313Blood pressure QTL 313arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1121833674166833674Rat
2293142Bp314Blood pressure QTL 314arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192184926137184926Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
631199Cm23Cardiac mass QTL 234.60.0004heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1115585465172949803Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118944897199050459Rat
61442Strs1Sensitivity to stroke QTL 17.4cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)1121767634166767634Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)190508614173018436Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
2313060Bss71Bone structure and strength QTL 712.60.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)1118944747163944747Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)177857876122857876Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)190508614180359386Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)194494440198211706Rat
724529Cm16Cardiac mass QTL 162.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)187580395150700247Rat
61370Mcs3Mammary carcinoma susceptibility QTL 32.15mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1102268556147268556Rat
724567Tcas6Tongue tumor susceptibility QTL 66.85tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)192948896144267916Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 12 4 19 4 5 9
Low 2 19 25 17 17 8 11 40 15 31 2 8
Below cutoff 24 20 20 20 34 20 5

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_006223346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006223347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008759577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008759578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010063049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010063050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010063051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010063052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010063053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010063055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010063056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010063057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_590332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_598920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000040147   ⟹   ENSRNOP00000046443
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1121,878,713 - 121,958,470 (+)Ensembl
Rnor_6.0 Ensembl1129,255,396 - 129,334,292 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000119682   ⟹   ENSRNOP00000095632
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1121,878,718 - 121,958,470 (+)Ensembl
RefSeq Acc Id: XM_006229362   ⟹   XP_006229424
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81131,288,814 - 131,370,146 (+)NCBI
mRatBN7.21121,878,708 - 121,960,795 (+)NCBI
Rnor_6.01129,254,242 - 129,333,489 (+)NCBI
Rnor_5.01130,313,012 - 130,392,159 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006229363   ⟹   XP_006229425
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81131,289,478 - 131,370,146 (+)NCBI
mRatBN7.21121,879,367 - 121,958,439 (+)NCBI
Rnor_6.01129,254,928 - 129,333,489 (+)NCBI
Rnor_5.01130,313,012 - 130,392,159 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008759577   ⟹   XP_008757799
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81131,289,480 - 131,370,146 (+)NCBI
mRatBN7.21121,879,369 - 121,958,439 (+)NCBI
Rnor_6.01129,254,931 - 129,333,489 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008759578   ⟹   XP_008757800
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81131,289,488 - 131,370,146 (+)NCBI
mRatBN7.21121,879,367 - 121,958,439 (+)NCBI
Rnor_6.01129,254,966 - 129,333,489 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039101007   ⟹   XP_038956935
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81131,289,318 - 131,370,146 (+)NCBI
mRatBN7.21121,879,209 - 121,958,439 (+)NCBI
RefSeq Acc Id: XM_039101008   ⟹   XP_038956936
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81131,288,794 - 131,365,590 (+)NCBI
mRatBN7.21121,878,685 - 121,955,490 (+)NCBI
RefSeq Acc Id: XM_039101010   ⟹   XP_038956938
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81131,323,500 - 131,370,146 (+)NCBI
mRatBN7.21121,913,394 - 121,958,439 (+)NCBI
RefSeq Acc Id: XM_039101012   ⟹   XP_038956940
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81131,311,982 - 131,370,146 (+)NCBI
mRatBN7.21121,901,872 - 121,958,439 (+)NCBI
RefSeq Acc Id: XM_039101013   ⟹   XP_038956941
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81131,309,483 - 131,370,146 (+)NCBI
mRatBN7.21121,899,372 - 121,958,439 (+)NCBI
RefSeq Acc Id: XM_039101015   ⟹   XP_038956943
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81131,288,785 - 131,359,420 (+)NCBI
mRatBN7.21121,878,675 - 121,949,317 (+)NCBI
RefSeq Acc Id: XM_039101017   ⟹   XP_038956945
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81131,339,325 - 131,370,146 (+)NCBI
mRatBN7.21121,929,217 - 121,958,439 (+)NCBI
RefSeq Acc Id: XR_010063049
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81131,288,814 - 131,371,119 (+)NCBI
RefSeq Acc Id: XR_010063050
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81131,288,814 - 131,378,547 (+)NCBI
RefSeq Acc Id: XR_010063051
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81131,288,814 - 131,378,548 (+)NCBI
RefSeq Acc Id: XR_010063052
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81131,288,814 - 131,371,119 (+)NCBI
RefSeq Acc Id: XR_010063053
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81131,288,814 - 131,378,547 (+)NCBI
RefSeq Acc Id: XR_010063055
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81131,288,795 - 131,367,409 (+)NCBI
RefSeq Acc Id: XR_010063056
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81131,288,780 - 131,359,414 (+)NCBI
RefSeq Acc Id: XR_010063057
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81131,288,785 - 131,359,391 (+)NCBI
RefSeq Acc Id: XP_006229424   ⟸   XM_006229362
- Peptide Label: isoform X1
- UniProtKB: F1LYW9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006229425   ⟸   XM_006229363
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ALU9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008757800   ⟸   XM_008759578
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ALU9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008757799   ⟸   XM_008759577
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ALU9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000046443   ⟸   ENSRNOT00000040147
RefSeq Acc Id: XP_038956943   ⟸   XM_039101015
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038956936   ⟸   XM_039101008
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038956935   ⟸   XM_039101007
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ALU9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038956941   ⟸   XM_039101013
- Peptide Label: isoform X5
- UniProtKB: A6JBU9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038956940   ⟸   XM_039101012
- Peptide Label: isoform X5
- UniProtKB: A6JBU9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038956938   ⟸   XM_039101010
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038956945   ⟸   XM_039101017
- Peptide Label: isoform X7
RefSeq Acc Id: ENSRNOP00000095632   ⟸   ENSRNOT00000119682

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LYW9-F1-model_v2 AlphaFold F1LYW9 1-335 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1585883 AgrOrtholog
BioCyc Gene G2FUF-58970 BioCyc
Ensembl Genes ENSRNOG00000022822 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000040147.6 UniProtKB/TrEMBL
  ENSRNOT00000119682.1 UniProtKB/TrEMBL
InterPro Acyl_CoA_acyltransferase UniProtKB/TrEMBL
  FAM169 UniProtKB/TrEMBL
KEGG Report rno:680906 UniProtKB/TrEMBL
NCBI Gene 680906 ENTREZGENE
PANTHER PTHR22442 UniProtKB/TrEMBL
  PTHR22442:SF4 UniProtKB/TrEMBL
PhenoGen Fam169b PhenoGen
RatGTEx ENSRNOG00000022822 RatGTEx
Superfamily-SCOP SSF55729 UniProtKB/TrEMBL
UniProt A0A8I6ALU9 ENTREZGENE, UniProtKB/TrEMBL
  A6JBU9 ENTREZGENE, UniProtKB/TrEMBL
  F1LYW9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-04-21 Fam169b  family with sequence similarity 169, member B  LOC680906  hypothetical protein LOC680906  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC680906  hypothetical protein LOC680906      Symbol and Name status set to provisional 70820 PROVISIONAL