Kdm3b (lysine demethylase 3B) - Rat Genome Database

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Gene: Kdm3b (lysine demethylase 3B) Rattus norvegicus
Analyze
Symbol: Kdm3b
Name: lysine demethylase 3B
RGD ID: 1583423
Description: Enables antioxidant activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Predicted to be part of chromatin and histone deacetylase complex. Used to study anxiety disorder and visual epilepsy. Orthologous to human KDM3B (lysine demethylase 3B); PARTICIPATES IN histone modification pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; paracetamol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC102550630; LOC108353163; LOC682469; lysine (K)-specific demethylase 3B; lysine-specific demethylase 3B; lysine-specific demethylase 3B-like; similar to jumonji domain containing 1B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81826,655,004 - 26,710,814 (+)NCBIGRCr8
mRatBN7.21826,380,859 - 26,436,701 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1826,380,964 - 26,436,628 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01827,593,823 - 27,631,129 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1827,576,129 - 27,631,088 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01827,306,788 - 27,343,047 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1826,119,377 - 26,174,614 (+)NCBICelera
Cytogenetic Map18p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. DNA profiling by array comparative genomic hybridization (CGH) of peripheral blood mononuclear cells (PBMC) and tumor tissue cell in non-small cell lung cancer (NSCLC). Baik SH, etal., Mol Biol Rep. 2009 Sep;36(7):1767-78. doi: 10.1007/s11033-008-9380-7. Epub 2008 Nov 1.
2. Histone lysine methylation dynamics: establishment, regulation, and biological impact. Black JC, etal., Mol Cell. 2012 Nov 30;48(4):491-507. doi: 10.1016/j.molcel.2012.11.006.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. KDM3B is the H3K9 demethylase involved in transcriptional activation of lmo2 in leukemia. Kim JY, etal., Mol Cell Biol. 2012 Jul;32(14):2917-33. doi: 10.1128/MCB.00133-12. Epub 2012 May 21.
5. An epigenetic role for PRL-3 as a regulator of H3K9 methylation in colorectal cancer. Liu Y, etal., Gut. 2013 Apr;62(4):571-81. doi: 10.1136/gutjnl-2011-301059. Epub 2012 Feb 16.
6. [Olygopeptide KND as a putative endogenous prototype of delta sleep inducing peptide (DSIP). Comparative study of biological properties]. Mikhaleva II, etal., Bioorg Khim. 2013 May-Jun;39(3):277-84.
7. JmjC-domain-containing histone demethylases of the JMJD1B type as putative precursors of endogenous DSIP. Mikhaleva II, etal., Peptides. 2011 Apr;32(4):826-31. doi: 10.1016/j.peptides.2011.01.006. Epub 2011 Jan 22.
8. Histone lysine demethylases in breast cancer. Paolicchi E, etal., Crit Rev Oncol Hematol. 2013 May;86(2):97-103. doi: 10.1016/j.critrevonc.2012.11.008. Epub 2012 Dec 23.
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Comprehensive gene review and curation RGD comprehensive gene curation

Genomics

Comparative Map Data
Kdm3b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81826,655,004 - 26,710,814 (+)NCBIGRCr8
mRatBN7.21826,380,859 - 26,436,701 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1826,380,964 - 26,436,628 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01827,593,823 - 27,631,129 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1827,576,129 - 27,631,088 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01827,306,788 - 27,343,047 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1826,119,377 - 26,174,614 (+)NCBICelera
Cytogenetic Map18p12NCBI
KDM3B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385138,352,685 - 138,437,027 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5138,352,685 - 138,437,028 (+)EnsemblGRCh38hg38GRCh38
GRCh375137,688,374 - 137,772,716 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365137,716,184 - 137,800,615 (+)NCBINCBI36Build 36hg18NCBI36
Build 345137,716,183 - 137,800,616NCBI
Celera5133,809,116 - 133,893,549 (+)NCBICelera
Cytogenetic Map5q31.2NCBI
HuRef5132,879,205 - 132,963,497 (+)NCBIHuRef
CHM1_15137,121,010 - 137,205,439 (+)NCBICHM1_1
T2T-CHM13v2.05138,878,903 - 138,963,243 (+)NCBIT2T-CHM13v2.0
Kdm3b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391834,910,061 - 34,972,423 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1834,910,100 - 34,971,713 (+)EnsemblGRCm39 Ensembl
GRCm381834,777,008 - 34,839,370 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1834,777,047 - 34,838,660 (+)EnsemblGRCm38mm10GRCm38
MGSCv371834,936,662 - 34,999,024 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361834,902,982 - 34,965,344 (+)NCBIMGSCv36mm8
Celera1835,231,299 - 35,293,372 (+)NCBICelera
Cytogenetic Map18B1NCBI
cM Map1818.73NCBI
Kdm3b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554182,026,254 - 2,098,223 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554182,026,254 - 2,098,223 (-)NCBIChiLan1.0ChiLan1.0
KDM3B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24133,627,936 - 133,712,447 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15131,767,490 - 131,852,004 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05133,732,400 - 133,816,988 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15139,863,961 - 139,947,895 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5139,863,922 - 139,947,895 (+)Ensemblpanpan1.1panPan2
KDM3B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11125,954,352 - 26,024,919 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1125,943,864 - 26,023,866 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1124,717,936 - 24,794,255 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01126,804,754 - 26,881,233 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1126,804,369 - 26,881,233 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11125,517,476 - 25,588,205 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01125,334,621 - 25,411,002 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01125,998,804 - 26,075,210 (+)NCBIUU_Cfam_GSD_1.0
Kdm3b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213154,011,186 - 154,094,889 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365317,516,125 - 7,600,347 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365317,517,810 - 7,600,319 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KDM3B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2140,346,223 - 140,418,527 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12140,346,145 - 140,418,556 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22146,045,537 - 146,115,232 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KDM3B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12341,027,490 - 41,111,560 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2341,062,020 - 41,112,469 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603436,775,963 - 36,860,235 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kdm3b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474331,148,098 - 31,225,992 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474331,148,051 - 31,224,896 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Kdm3b
132 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:191
Count of miRNA genes:105
Interacting mature miRNAs:117
Transcripts:ENSRNOT00000070930, ENSRNOT00000071214, ENSRNOT00000073904, ENSRNOT00000074700
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194179131393320Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181194179131393320Rat
12904690Cm129Cardiac mass QTL 1290.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)181194427326548295Rat
12904689Cm128Cardiac mass QTL 1280.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)181194427326548295Rat
12904693Am20Aortic mass QTL 200.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)181194427326548295Rat
12904695Kidm73Kidney mass QTL 730.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)181194427326548295Rat
12904691Cm130Cardiac mass QTL 1300.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)181194427326548295Rat
12904680Bw189Body weight QTL 1890.019body mass (VT:0001259)body weight (CMO:0000012)181194427326548295Rat
2301410Bp317Blood pressure QTL 3170.004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194427326548295Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194429931359530Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)181194429941122201Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194429952293055Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181495133759951337Rat
1358193Emca2Estrogen-induced mammary cancer QTL 21.6mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)181800759963571040Rat
1331735Rf44Renal function QTL 442.981urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)181823456431359530Rat
1331775Bp235Blood pressure QTL 2353.201arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181823456431359530Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181927890183218561Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
1641923Colcr8Colorectal carcinoma resistance QTL 83.10.0014intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)182206624252293055Rat
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182557098570570985Rat

Markers in Region
RH93228  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21826,436,430 - 26,436,565 (+)MAPPERmRatBN7.2
Rnor_6.01827,630,859 - 27,630,993NCBIRnor6.0
Rnor_5.01827,342,777 - 27,342,911UniSTSRnor5.0
Celera1826,174,344 - 26,174,478UniSTS
AW531130  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21826,384,011 - 26,384,247 (+)MAPPERmRatBN7.2
Rnor_6.01827,578,469 - 27,578,704NCBIRnor6.0
Rnor_5.01827,291,599 - 27,291,834UniSTSRnor5.0
RGSC_v3.41827,254,443 - 27,254,678UniSTSRGSC3.4
Celera1826,121,732 - 26,121,967UniSTS
RH 3.4 Map18369.5UniSTS
BF409153  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21826,428,309 - 26,428,559 (+)MAPPERmRatBN7.2
Rnor_6.01827,622,702 - 27,622,951NCBIRnor6.0
Rnor_5.01827,335,425 - 27,335,674UniSTSRnor5.0
Celera1826,166,066 - 26,166,315UniSTS
RH 3.4 Map18370.6UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 35 46 30 19 30 2 4 74 35 38 11 2
Low 8 11 11 11 6 7 3 6
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000070930   ⟹   ENSRNOP00000067649
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1826,380,964 - 26,436,628 (+)Ensembl
Rnor_6.0 Ensembl1827,576,129 - 27,631,088 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000110221   ⟹   ENSRNOP00000082780
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1826,380,964 - 26,436,628 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000111068   ⟹   ENSRNOP00000090259
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1826,380,964 - 26,436,628 (+)Ensembl
RefSeq Acc Id: NM_001427469   ⟹   NP_001414398
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81826,655,687 - 26,710,814 (+)NCBI
RefSeq Acc Id: XM_039097277   ⟹   XP_038953205
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81826,656,032 - 26,710,814 (+)NCBI
mRatBN7.21826,381,918 - 26,436,701 (+)NCBI
RefSeq Acc Id: XM_039097278   ⟹   XP_038953206
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81826,655,004 - 26,710,814 (+)NCBI
mRatBN7.21826,380,910 - 26,436,701 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001414398 (Get FASTA)   NCBI Sequence Viewer  
  XP_038953205 (Get FASTA)   NCBI Sequence Viewer  
  XP_038953206 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL76245 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000067649.2
  ENSRNOP00000082780.1
  ENSRNOP00000090259
  ENSRNOP00000090259.1
RefSeq Acc Id: ENSRNOP00000067649   ⟸   ENSRNOT00000070930
RefSeq Acc Id: XP_038953206   ⟸   XM_039097278
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AC36 (UniProtKB/TrEMBL),   M0RDF1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953205   ⟸   XM_039097277
- Peptide Label: isoform X1
- UniProtKB: M0RDF1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000090259   ⟸   ENSRNOT00000111068
RefSeq Acc Id: ENSRNOP00000082780   ⟸   ENSRNOT00000110221
RefSeq Acc Id: NP_001414398   ⟸   NM_001427469
- UniProtKB: M0RDF1 (UniProtKB/TrEMBL)
Protein Domains
JmjC

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0RDF1-F1-model_v2 AlphaFold M0RDF1 1-1724 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1583423 AgrOrtholog
BioCyc Gene G2FUF-7942 BioCyc
Ensembl Genes ENSRNOG00000050200 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000070930.4 UniProtKB/TrEMBL
  ENSRNOT00000110221.1 UniProtKB/TrEMBL
  ENSRNOT00000111068.1 UniProtKB/TrEMBL
Gene3D-CATH Cupin UniProtKB/TrEMBL
InterPro JHDM2-like UniProtKB/TrEMBL
  JmjC_dom UniProtKB/TrEMBL
NCBI Gene 682469 ENTREZGENE
PANTHER LYSINE-SPECIFIC DEMETHYLASE 3B UniProtKB/TrEMBL
  PTHR12549 UniProtKB/TrEMBL
Pfam JmjC UniProtKB/TrEMBL
PhenoGen Kdm3b PhenoGen
PROSITE JMJC UniProtKB/TrEMBL
RatGTEx ENSRNOG00000050200 RatGTEx
SMART JmjC UniProtKB/TrEMBL
Superfamily-SCOP Clavaminate synthase-like UniProtKB/TrEMBL
UniProt A0A8I5ZXX2_RAT UniProtKB/TrEMBL
  A0A8I6AC36 ENTREZGENE, UniProtKB/TrEMBL
  A6J2W3_RAT UniProtKB/TrEMBL
  M0RDF1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Kdm3b  lysine demethylase 3B  LOC108353163  lysine-specific demethylase 3B-like  Data merged from RGD:11517358 737654 PROVISIONAL
2016-08-02 LOC108353163  lysine-specific demethylase 3B-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2016-02-17 Kdm3b  lysine demethylase 3B  Kdm3b  lysine (K)-specific demethylase 3B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-07-29 Kdm3b  lysine (K)-specific demethylase 3B  LOC102550630  lysine-specific demethylase 3B-like  Data merged from RGD:7499474 737654 PROVISIONAL
2013-12-17 LOC102550630  lysine-specific demethylase 3B-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-08-13 Kdm3b  lysine (K)-specific demethylase 3B  LOC682469  similar to jumonji domain containing 1B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC682469  similar to jumonji domain containing 1B      Symbol and Name status set to provisional 70820 PROVISIONAL