Krt79 (keratin 79) - Rat Genome Database

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Gene: Krt79 (keratin 79) Rattus norvegicus
Analyze
Symbol: Krt79
Name: keratin 79
RGD ID: 1583372
Description: Predicted to enable enzyme binding activity. Predicted to be a structural constituent of skin epidermis. Predicted to be involved in intermediate filament organization and keratinization. Predicted to be active in keratin filament. Orthologous to human KRT79 (keratin 79); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: keratin 79, type II; keratin, type II cytoskeletal 79; LOC683720; LOC685652; similar to keratin 6L
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87134,935,395 - 134,946,447 (-)NCBIGRCr8
mRatBN7.27133,056,710 - 133,067,750 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7133,056,709 - 133,067,705 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.07143,528,204 - 143,538,713 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7143,528,204 - 143,538,579 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07141,325,913 - 141,336,946 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47140,632,826 - 140,644,792 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7129,494,402 - 129,504,743 (-)NCBICelera
Cytogenetic Map7q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19199708   PMID:23382074   PMID:23533145  


Genomics

Comparative Map Data
Krt79
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87134,935,395 - 134,946,447 (-)NCBIGRCr8
mRatBN7.27133,056,710 - 133,067,750 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7133,056,709 - 133,067,705 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.07143,528,204 - 143,538,713 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7143,528,204 - 143,538,579 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07141,325,913 - 141,336,946 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47140,632,826 - 140,644,792 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7129,494,402 - 129,504,743 (-)NCBICelera
Cytogenetic Map7q36NCBI
KRT79
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381252,821,408 - 52,834,311 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1252,821,408 - 52,834,311 (-)EnsemblGRCh38hg38GRCh38
GRCh371253,215,192 - 53,228,095 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361251,501,498 - 51,514,344 (-)NCBINCBI36Build 36hg18NCBI36
Celera1252,861,510 - 52,874,357 (-)NCBICelera
Cytogenetic Map12q13.13NCBI
HuRef1250,259,243 - 50,272,090 (-)NCBIHuRef
CHM1_11253,182,037 - 53,194,883 (-)NCBICHM1_1
T2T-CHM13v2.01252,785,865 - 52,798,767 (-)NCBIT2T-CHM13v2.0
Krt79
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915101,837,767 - 101,848,759 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15101,837,767 - 101,848,759 (-)EnsemblGRCm39 Ensembl
GRCm3815101,929,332 - 101,940,324 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15101,929,332 - 101,940,324 (-)EnsemblGRCm38mm10GRCm38
MGSCv3715101,759,763 - 101,770,755 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3615101,757,366 - 101,768,358 (-)NCBIMGSCv36mm8
Celera15104,081,197 - 104,092,188 (-)NCBICelera
Cytogenetic Map15F2NCBI
cM Map1557.14NCBI
Krt79
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955458121,633 - 133,133 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955458121,681 - 132,775 (-)NCBIChiLan1.0ChiLan1.0
KRT79
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21041,358,343 - 41,371,270 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11241,355,106 - 41,368,033 (+)NCBINHGRI_mPanPan1
PanPan1.1 Ensembl1236,704,041 - 36,716,902 (+)Ensemblpanpan1.1panPan2
KRT79
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1272,269,857 - 2,280,537 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2743,971,752 - 43,982,434 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0272,271,027 - 2,281,708 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1272,287,509 - 2,298,185 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0272,273,691 - 2,284,402 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02744,370,689 - 44,381,372 (-)NCBIUU_Cfam_GSD_1.0
Krt79
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494562,966,144 - 62,977,194 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651210,188,022 - 10,197,773 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651210,187,655 - 10,197,773 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KRT79
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl518,108,680 - 18,119,773 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1518,108,811 - 18,119,767 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2518,602,235 - 18,613,191 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KRT79
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11148,952,916 - 48,968,365 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1148,953,338 - 48,965,795 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037197,105,695 - 197,118,938 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Krt79
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624904914,148 - 922,728 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624904913,810 - 923,050 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Krt79
101 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:44
Count of miRNA genes:43
Interacting mature miRNAs:44
Transcripts:ENSRNOT00000066627
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7111182207135012528Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7112308254133492884Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7119513385135012528Rat
1357339Stl14Serum triglyceride level QTL 143.450.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7112729683133492707Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
631663Bw6Body weight QTL 63.4body mass (VT:0001259)body weight (CMO:0000012)7111075573134976056Rat

Markers in Region
BF389616  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27133,056,747 - 133,056,960 (+)MAPPERmRatBN7.2
Rnor_6.07143,528,242 - 143,528,454NCBIRnor6.0
Rnor_5.07141,325,951 - 141,326,163UniSTSRnor5.0
RGSC_v3.47140,632,864 - 140,633,076UniSTSRGSC3.4
Celera7129,494,440 - 129,494,652UniSTS
RH 3.4 Map71063.0UniSTS
Cytogenetic Map7q36UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 24 14 14 14 2 8
Low 2 13 38 27 9 27 1 1 4 21 32 3 1
Below cutoff 6 5 10 5 8 56 13 7 5

Sequence


RefSeq Acc Id: ENSRNOT00000081518   ⟹   ENSRNOP00000069765
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7133,056,709 - 133,067,705 (-)Ensembl
Rnor_6.0 Ensembl7143,528,204 - 143,538,579 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000104938   ⟹   ENSRNOP00000080996
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7133,056,709 - 133,067,442 (-)Ensembl
RefSeq Acc Id: XM_003750410   ⟹   XP_003750458
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87134,935,395 - 134,946,097 (-)NCBI
mRatBN7.27133,056,710 - 133,067,352 (-)NCBI
Rnor_6.07143,528,204 - 143,538,713 (-)NCBI
Rnor_5.07141,325,913 - 141,336,946 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039080393   ⟹   XP_038936321
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87134,935,395 - 134,946,447 (-)NCBI
mRatBN7.27133,056,710 - 133,067,750 (-)NCBI
RefSeq Acc Id: XM_039080394   ⟹   XP_038936322
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87134,935,395 - 134,942,606 (-)NCBI
mRatBN7.27133,056,710 - 133,063,925 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003750458 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936321 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936322 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL86873 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000069765
  ENSRNOP00000069765.2
  ENSRNOP00000080996
  ENSRNOP00000080996.1
RefSeq Acc Id: XP_003750458   ⟸   XM_003750410
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZR22 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000069765   ⟸   ENSRNOT00000081518
RefSeq Acc Id: XP_038936321   ⟸   XM_039080393
- Peptide Label: isoform X2
- UniProtKB: A0A0G2JW69 (UniProtKB/TrEMBL),   A6KCR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936322   ⟸   XM_039080394
- Peptide Label: isoform X3
RefSeq Acc Id: ENSRNOP00000080996   ⟸   ENSRNOT00000104938
Protein Domains
IF rod

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1583372 AgrOrtholog
BioCyc Gene G2FUF-31957 BioCyc
Ensembl Genes ENSRNOG00000058340 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000081518.2 UniProtKB/TrEMBL
  ENSRNOT00000104938.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/TrEMBL
  Single helix bin UniProtKB/TrEMBL
  Vasodilator-stimulated phosphoprotein UniProtKB/TrEMBL
InterPro IF_rod_dom UniProtKB/TrEMBL
  Intermediate_filament_CS UniProtKB/TrEMBL
  Keratin_2_head UniProtKB/TrEMBL
  Keratin_II UniProtKB/TrEMBL
KEGG Report rno:683720 UniProtKB/TrEMBL
NCBI Gene 683720 ENTREZGENE
PANTHER GATA-TYPE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  KERATIN, TYPE II CYTOSKELETAL 79 UniProtKB/TrEMBL
Pfam Filament UniProtKB/TrEMBL
  Keratin_2_head UniProtKB/TrEMBL
PhenoGen Krt79 PhenoGen
PRINTS TYPE2KERATIN UniProtKB/TrEMBL
PROSITE IF_ROD_2 UniProtKB/TrEMBL
  PS00226 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000058340 RatGTEx
SMART Filament UniProtKB/TrEMBL
Superfamily-SCOP Intermediate filament protein, coiled coil region UniProtKB/TrEMBL
UniProt A0A0G2JW69 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZR22 ENTREZGENE, UniProtKB/TrEMBL
  A6KCR9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-16 Krt79  keratin 79  Krt79  keratin 79, type II  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-07-29 Krt79  keratin 79, type II  LOC685652  similar to keratin 6L  Data merged from RGD:1591361 737654 PROVISIONAL
2015-01-28 Krt79  keratin 79, type II  Krt79  keratin 79  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-08-13 Krt79  keratin 79  LOC683720  similar to keratin 6L  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC685652  similar to keratin 6L      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC683720  similar to keratin 6L      Symbol and Name status set to provisional 70820 PROVISIONAL