Cdk11bl1 (cyclin-dependent kinase 11B like 1) - Rat Genome Database

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Gene: Cdk11bl1 (cyclin-dependent kinase 11B like 1) Rattus norvegicus
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Symbol: Cdk11bl1
Name: cyclin-dependent kinase 11B like 1
RGD ID: 1566355
Description: Predicted to enable cyclin-dependent protein serine/threonine kinase activity and protein serine kinase activity. Predicted to be involved in phosphorylation. Predicted to be located in nuclear membrane and perinuclear region of cytoplasm; INTERACTS WITH flutamide.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cyclin-dependent kinase 11B-like; LOC315362; RGD1566355; similar to cell division cycle 2-like 1
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X112,384,051 - 112,386,958 (+)NCBIGRCr8
mRatBN7.2X107,573,678 - 107,590,244 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0X115,268,134 - 115,270,936 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X113,707,506 - 113,723,179 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X34,504,992 - 34,507,568 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX106,985,103 - 106,987,905 (+)NCBICelera
Cytogenetic MapXq34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
flutamide  (EXP)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

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Variants in Cdk11bl1
367 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat
724551Glom1Glomerulus QTL 12.80.0004kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)X75294106120294106Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X103312877148312877Rat
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat

Markers in Region
RH134324  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25166,238,039 - 166,238,442 (+)MAPPERmRatBN7.2
mRatBN7.2X107,589,713 - 107,589,896 (+)MAPPERmRatBN7.2
Rnor_6.0X115,270,488 - 115,270,670NCBIRnor6.0
Rnor_6.05173,077,208 - 173,077,610NCBIRnor6.0
Rnor_5.05176,552,922 - 176,553,324UniSTSRnor5.0
Rnor_5.0X113,722,731 - 113,722,913UniSTSRnor5.0
RGSC_v3.45172,485,313 - 172,485,715UniSTSRGSC3.4
RGSC_v3.4X34,505,206 - 34,505,388UniSTSRGSC3.4
CeleraX106,987,457 - 106,987,639UniSTS
Celera5164,438,965 - 164,439,367UniSTS
RH 3.4 Map51145.9UniSTS
Cytogenetic Map5q36UniSTS
Cytogenetic MapXq14UniSTS
MARC_5059-5060:996690096:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25166,238,085 - 166,238,696 (+)MAPPERmRatBN7.2
mRatBN7.2X107,589,759 - 107,590,068 (+)MAPPERmRatBN7.2
Rnor_6.0X115,270,534 - 115,270,842NCBIRnor6.0
Rnor_6.05173,077,254 - 173,077,864NCBIRnor6.0
Rnor_5.05176,552,968 - 176,553,578UniSTSRnor5.0
Rnor_5.0X113,722,777 - 113,723,085UniSTSRnor5.0
RGSC_v3.4X34,505,034 - 34,505,342UniSTSRGSC3.4
RGSC_v3.45172,485,359 - 172,485,969UniSTSRGSC3.4
Celera5164,439,011 - 164,439,621UniSTS
CeleraX106,987,503 - 106,987,811UniSTS
Cytogenetic MapXq14UniSTS
Cytogenetic Map5q36UniSTS


Expression


Sequence


RefSeq Acc Id: XM_063280561   ⟹   XP_063136631
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X112,384,051 - 112,386,958 (+)NCBI
Protein Sequences
Protein RefSeqs XP_063136631 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_063136631   ⟸   XM_063280561


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-1498 BioCyc
NCBI Gene 315362 ENTREZGENE
PhenoGen Cdk11bl1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Cdk11bl1  cyclin-dependent kinase 11B like 1  RGD1566355  similar to cell division cycle 2-like 1  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1566355  similar to cell division cycle 2-like 1   RGD1566355_predicted  similar to cell division cycle 2-like 1 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1566355_predicted  similar to cell division cycle 2-like 1 (predicted)  LOC315362  similar to cell division cycle 2-like 1  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC315362  similar to cell division cycle 2-like 1      Symbol and Name status set to provisional 70820 PROVISIONAL