Peli2 (pellino E3 ubiquitin protein ligase family member 2) - Rat Genome Database

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Gene: Peli2 (pellino E3 ubiquitin protein ligase family member 2) Rattus norvegicus
Analyze
Symbol: Peli2
Name: pellino E3 ubiquitin protein ligase family member 2
RGD ID: 1565884
Description: Predicted to enable protein-macromolecule adaptor activity and ubiquitin protein ligase activity. Predicted to be involved in protein polyubiquitination. Predicted to act upstream of or within positive regulation of MAPK cascade and positive regulation of protein phosphorylation. Predicted to be located in cytosol and membrane. Orthologous to human PELI2 (pellino E3 ubiquitin protein ligase family member 2); PARTICIPATES IN interleukin-1 signaling pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: E3 ubiquitin-protein ligase pellino homolog 2; LOC305835; pellino 2; pellino homolog 2; pellino homolog 2 (Drosophila); RGD1565884; similar to Pellino protein homolog 2 (Pellino 2)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81523,872,984 - 24,017,448 (+)NCBIGRCr8
mRatBN7.21521,393,262 - 21,537,737 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1521,393,262 - 21,535,106 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1524,173,903 - 24,315,895 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01525,131,901 - 25,274,059 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01523,382,352 - 23,524,344 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01524,942,218 - 25,086,350 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1524,942,218 - 25,083,931 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01528,874,964 - 29,015,968 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41524,227,734 - 24,371,242 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1521,777,356 - 21,917,575 (+)NCBICelera
Cytogenetic Map15p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (ISO)
membrane  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Comprehensive gene review and curation RGD comprehensive gene curation
4. Interleukin-1 (IL-1) pathway. Weber A, etal., Sci Signal. 2010 Jan 19;3(105):cm1. doi: 10.1126/scisignal.3105cm1.
Additional References at PubMed
PMID:12804775   PMID:16831874  


Genomics

Comparative Map Data
Peli2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81523,872,984 - 24,017,448 (+)NCBIGRCr8
mRatBN7.21521,393,262 - 21,537,737 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1521,393,262 - 21,535,106 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1524,173,903 - 24,315,895 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01525,131,901 - 25,274,059 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01523,382,352 - 23,524,344 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01524,942,218 - 25,086,350 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1524,942,218 - 25,083,931 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01528,874,964 - 29,015,968 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41524,227,734 - 24,371,242 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1521,777,356 - 21,917,575 (+)NCBICelera
Cytogenetic Map15p14NCBI
PELI2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381456,118,411 - 56,301,524 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1456,117,814 - 56,301,524 (+)EnsemblGRCh38hg38GRCh38
GRCh371456,585,129 - 56,768,242 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361455,654,846 - 55,837,784 (+)NCBINCBI36Build 36hg18NCBI36
Build 341455,654,955 - 55,837,773NCBI
Celera1436,634,745 - 36,817,661 (+)NCBICelera
Cytogenetic Map14q22.3NCBI
HuRef1436,750,325 - 36,932,809 (+)NCBIHuRef
CHM1_11456,523,869 - 56,706,776 (+)NCBICHM1_1
T2T-CHM13v2.01450,324,186 - 50,507,449 (+)NCBIT2T-CHM13v2.0
Peli2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391448,358,096 - 48,519,035 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1448,358,280 - 48,519,032 (+)EnsemblGRCm39 Ensembl
GRCm381448,120,777 - 48,281,578 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1448,120,823 - 48,281,575 (+)EnsemblGRCm38mm10GRCm38
MGSCv371448,740,544 - 48,880,558 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361447,042,891 - 47,178,775 (+)NCBIMGSCv36mm8
Celera1444,316,653 - 44,456,842 (+)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1424.6NCBI
Peli2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546610,227,112 - 10,335,515 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546610,228,101 - 10,335,129 (+)NCBIChiLan1.0ChiLan1.0
PELI2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21557,234,878 - 57,417,897 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11456,451,392 - 56,634,412 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01436,700,217 - 36,883,224 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11454,971,311 - 55,154,435 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1455,031,362 - 55,150,067 (+)Ensemblpanpan1.1panPan2
PELI2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1831,834,287 - 32,013,387 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl831,833,909 - 32,012,092 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha831,602,071 - 31,782,087 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0832,088,573 - 32,266,054 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl832,088,152 - 32,265,946 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1831,689,504 - 31,869,587 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0831,767,532 - 31,944,848 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0832,140,269 - 32,317,670 (+)NCBIUU_Cfam_GSD_1.0
Peli2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864073,180,190 - 73,311,503 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936495875,645 - 1,012,081 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936495895,903 - 1,011,486 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PELI2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1185,397,812 - 185,599,780 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11185,397,807 - 185,604,160 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21206,187,017 - 206,220,942 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PELI2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12433,319,212 - 33,669,878 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2433,319,402 - 33,505,705 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605321,536,460 - 21,732,032 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Peli2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248841,101,550 - 1,282,444 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248841,101,636 - 1,286,610 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Peli2
1621 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:915
Count of miRNA genes:314
Interacting mature miRNAs:429
Transcripts:ENSRNOT00000016629
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15129912054Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)colorectal tumor number (CMO:0001794)15226636822711984Rat
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15226636822711984Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
5685002Bss103Bone structure and strength QTL 1032.8tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)151448116528469888Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)151985656634924750Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat

Markers in Region
BF406292  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21521,533,232 - 21,533,425 (+)MAPPERmRatBN7.2
Rnor_6.01525,082,058 - 25,082,250NCBIRnor6.0
Rnor_5.01529,013,776 - 29,013,968UniSTSRnor5.0
RGSC_v3.41524,369,050 - 24,369,242UniSTSRGSC3.4
Celera1521,915,404 - 21,915,596UniSTS
RH 3.4 Map15125.43UniSTS
Cytogenetic Map15p14UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 2 2 47 35 20 11
Low 3 43 55 39 19 39 8 11 27 21 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000016629   ⟹   ENSRNOP00000016629
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1521,393,262 - 21,535,106 (+)Ensembl
Rnor_6.0 Ensembl1524,942,218 - 25,083,931 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000097636   ⟹   ENSRNOP00000078130
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1521,442,162 - 21,535,106 (+)Ensembl
RefSeq Acc Id: NM_001107259   ⟹   NP_001100729
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81523,872,984 - 24,015,136 (+)NCBI
mRatBN7.21521,393,262 - 21,535,425 (+)NCBI
Rnor_6.01524,942,218 - 25,084,250 (+)NCBI
Rnor_5.01528,874,964 - 29,015,968 (+)NCBI
RGSC_v3.41524,227,734 - 24,371,242 (+)RGD
Celera1521,777,356 - 21,917,575 (+)RGD
Sequence:
RefSeq Acc Id: XM_017599664   ⟹   XP_017455153
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81523,873,351 - 24,017,448 (+)NCBI
mRatBN7.21521,393,613 - 21,537,737 (+)NCBI
Rnor_6.01524,942,555 - 25,086,350 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001100729   ⟸   NM_001107259
- UniProtKB: D3ZSK3 (UniProtKB/TrEMBL),   A6KE60 (UniProtKB/TrEMBL),   A0A8I5YCN0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017455153   ⟸   XM_017599664
- Peptide Label: isoform X1
- UniProtKB: A6KE62 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000016629   ⟸   ENSRNOT00000016629
RefSeq Acc Id: ENSRNOP00000078130   ⟸   ENSRNOT00000097636
Protein Domains
Pellino FHA   Pellino RING

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZSK3-F1-model_v2 AlphaFold D3ZSK3 1-419 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699615
Promoter ID:EPDNEW_R10139
Type:single initiation site
Name:Peli2_1
Description:pellino E3 ubiquitin protein ligase family member 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01524,942,237 - 24,942,297EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565884 AgrOrtholog
BioCyc Gene G2FUF-14129 BioCyc
Ensembl Genes ENSRNOG00000012363 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000016629 ENTREZGENE
  ENSRNOT00000016629.6 UniProtKB/TrEMBL
  ENSRNOT00000097636.1 UniProtKB/TrEMBL
InterPro Pellino UniProtKB/TrEMBL
  Pellino_FHA UniProtKB/TrEMBL
  Pellino_RING UniProtKB/TrEMBL
KEGG Report rno:305835 UniProtKB/TrEMBL
NCBI Gene 305835 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE PELLINO HOMOLOG 2 UniProtKB/TrEMBL
  PTHR12098 UniProtKB/TrEMBL
Pfam Pellino UniProtKB/TrEMBL
  Pellino_RING UniProtKB/TrEMBL
PhenoGen Peli2 PhenoGen
PIRSF Pellino UniProtKB/TrEMBL
RatGTEx ENSRNOG00000012363 RatGTEx
UniProt A0A8I5YCN0 ENTREZGENE, UniProtKB/TrEMBL
  A6KE60 ENTREZGENE, UniProtKB/TrEMBL
  A6KE62 ENTREZGENE, UniProtKB/TrEMBL
  D3ZSK3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-05 Peli2  pellino E3 ubiquitin protein ligase family member 2  Peli2  pellino homolog 2 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-01-20 Peli2  pellino homolog 2 (Drosophila)  Peli2  pellino 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Peli2  pellino 2  RGD1565884_predicted  similar to Pellino protein homolog 2 (Pellino 2) (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1565884_predicted  similar to Pellino protein homolog 2 (Pellino 2) (predicted)  LOC305835  similar to Pellino protein homolog 2 (Pellino 2)  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC305835  similar to Pellino protein homolog 2 (Pellino 2)      Symbol and Name status set to provisional 70820 PROVISIONAL