Arhgef10 (Rho guanine nucleotide exchange factor 10) - Rat Genome Database

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Gene: Arhgef10 (Rho guanine nucleotide exchange factor 10) Rattus norvegicus
Analyze
Symbol: Arhgef10
Name: Rho guanine nucleotide exchange factor 10
RGD ID: 1565043
Description: Predicted to enable guanyl-nucleotide exchange factor activity and kinesin binding activity. Predicted to be involved in cytoskeleton organization; myelination in peripheral nervous system; and positive regulation of stress fiber assembly. Predicted to be active in centrosome. Orthologous to human ARHGEF10 (Rho guanine nucleotide exchange factor 10); INTERACTS WITH 2,2',5,5'-tetrachlorobiphenyl; 6-propyl-2-thiouracil; atrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC306618; RGD1565043; Rho guanine nucleotide exchange factor (GEF) 10; similar to Rho guanine nucleotide exchange factor (GEF) 10
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81681,349,429 - 81,440,439 (-)NCBIGRCr8
mRatBN7.21674,647,147 - 74,738,784 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1674,647,153 - 74,738,173 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01679,725,629 - 79,817,065 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1679,725,643 - 79,793,619 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01679,302,340 - 79,392,426 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41679,458,304 - 79,547,225 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1672,465,044 - 72,554,359 (-)NCBICelera
Cytogenetic Map16q12.5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centrosome  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14508709   PMID:16896804   PMID:19635168   PMID:20042462  


Genomics

Comparative Map Data
Arhgef10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81681,349,429 - 81,440,439 (-)NCBIGRCr8
mRatBN7.21674,647,147 - 74,738,784 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1674,647,153 - 74,738,173 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01679,725,629 - 79,817,065 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1679,725,643 - 79,793,619 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01679,302,340 - 79,392,426 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41679,458,304 - 79,547,225 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1672,465,044 - 72,554,359 (-)NCBICelera
Cytogenetic Map16q12.5NCBI
ARHGEF10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3881,823,300 - 1,958,641 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl81,823,926 - 1,958,641 (+)EnsemblGRCh38hg38GRCh38
GRCh3781,772,092 - 1,906,807 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3681,759,556 - 1,894,214 (+)NCBINCBI36Build 36hg18NCBI36
Build 3481,808,165 - 1,894,206NCBI
Celera81,715,545 - 1,849,273 (+)NCBICelera
Cytogenetic Map8p23.3NCBI
HuRef81,586,197 - 1,723,095 (+)NCBIHuRef
CHM1_181,772,111 - 1,906,332 (+)NCBICHM1_1
T2T-CHM13v2.081,601,800 - 1,736,745 (+)NCBIT2T-CHM13v2.0
Arhgef10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39814,956,405 - 15,051,085 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl814,961,663 - 15,051,085 (+)EnsemblGRCm39 Ensembl
GRCm38814,906,412 - 15,001,085 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl814,911,663 - 15,001,085 (+)EnsemblGRCm38mm10GRCm38
MGSCv37814,911,717 - 15,001,085 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36814,928,877 - 15,000,415 (+)NCBIMGSCv36mm8
Celera815,075,995 - 15,165,401 (+)NCBICelera
Cytogenetic Map8A1.1NCBI
cM Map87.59NCBI
Arhgef10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540357,818,837 - 57,907,324 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540357,820,003 - 57,907,324 (-)NCBIChiLan1.0ChiLan1.0
ARHGEF10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2716,542,465 - 16,702,258 (+)NCBINHGRI_mPanPan1-v2
Mhudiblu_PPA_v085,381,357 - 5,541,094 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.181,747,801 - 1,862,917 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl81,724,413 - 1,862,917 (+)Ensemblpanpan1.1panPan2
ARHGEF10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11654,293,534 - 54,378,706 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1654,293,435 - 54,347,555 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1649,689,515 - 49,778,687 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01661,881,132 - 61,970,321 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11654,329,445 - 54,418,473 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01659,789,595 - 59,878,802 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01660,173,735 - 60,263,094 (-)NCBIUU_Cfam_GSD_1.0
Arhgef10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049431,011,978 - 1,103,474 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366151,048,536 - 1,102,242 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366151,012,009 - 1,103,468 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARHGEF10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1533,370,126 - 33,446,598 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11533,370,093 - 33,465,852 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21537,931,757 - 37,986,440 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARHGEF10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.181,487,076 - 1,620,387 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl81,502,226 - 1,620,389 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605443,381,468 - 43,516,813 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arhgef10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248611,006,948 - 1,082,106 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624861992,824 - 1,083,048 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Arhgef10
1180 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:125
Count of miRNA genes:71
Interacting mature miRNAs:76
Transcripts:ENSRNOT00000016745, ENSRNOT00000073971
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163528887080288870Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)163775215682752156Rat
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)163775215682752156Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164239634584729064Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165272646484729064Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165272646484729064Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165272646484729064Rat
631525Pia14Pristane induced arthritis QTL 144.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)165571108783402471Rat
1298527Arunc2Aerobic running capacity QTL 22.9exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)166853271675029966Rat

Markers in Region
RH131116  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21674,647,280 - 74,647,465 (+)MAPPERmRatBN7.2
Rnor_6.01679,725,761 - 79,725,945NCBIRnor6.0
Rnor_5.01679,302,472 - 79,302,656UniSTSRnor5.0
RGSC_v3.41679,457,269 - 79,457,453UniSTSRGSC3.4
Celera1672,465,176 - 72,465,360UniSTS
RH 3.4 Map16727.9UniSTS
Cytogenetic Map16q12.5UniSTS
RH136741  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21674,661,281 - 74,661,404 (+)MAPPERmRatBN7.2
Rnor_6.01679,739,746 - 79,739,868NCBIRnor6.0
Rnor_5.01679,316,021 - 79,316,143UniSTSRnor5.0
RGSC_v3.41679,473,578 - 79,473,700UniSTSRGSC3.4
Celera1672,477,491 - 72,477,613UniSTS
Cytogenetic Map16q12.5UniSTS
AW533825  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21674,695,685 - 74,695,843 (+)MAPPERmRatBN7.2
Rnor_6.01679,774,144 - 79,774,301NCBIRnor6.0
Rnor_5.01679,350,419 - 79,350,576UniSTSRnor5.0
Celera1672,511,895 - 72,512,052UniSTS
RH 3.4 Map16728.8UniSTS
Cytogenetic Map16q12.5UniSTS
ha2626  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.213105,278,041 - 105,279,422 (+)MAPPERmRatBN7.2
Rnor_6.013112,477,086 - 112,478,466NCBIRnor6.0
Rnor_5.013117,027,835 - 117,029,215UniSTSRnor5.0
RGSC_v3.413109,613,020 - 109,614,400UniSTSRGSC3.4
Celera1672,530,738 - 72,530,895UniSTS
Celera13104,704,330 - 104,705,710UniSTS
Cytogenetic Map16q12.5UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 34 11 4 4 2 2 40 24 41 11 2
Low 3 9 46 37 19 37 6 9 34 11 6
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000073971   ⟹   ENSRNOP00000064046
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1674,647,153 - 74,738,173 (-)Ensembl
Rnor_6.0 Ensembl1679,725,643 - 79,793,619 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000119970   ⟹   ENSRNOP00000085722
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1674,647,153 - 74,738,173 (-)Ensembl
RefSeq Acc Id: NM_001427033   ⟹   NP_001413962
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81681,349,429 - 81,440,054 (-)NCBI
RefSeq Acc Id: XM_006253400   ⟹   XP_006253462
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81681,349,431 - 81,440,439 (-)NCBI
mRatBN7.21674,648,316 - 74,738,784 (-)NCBI
Rnor_6.01679,725,629 - 79,817,065 (-)NCBI
Rnor_5.01679,302,340 - 79,392,426 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006253403   ⟹   XP_006253465
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81681,349,431 - 81,440,097 (-)NCBI
mRatBN7.21674,648,316 - 74,737,818 (-)NCBI
Rnor_6.01679,725,629 - 79,816,477 (-)NCBI
Rnor_5.01679,302,340 - 79,392,426 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063275478   ⟹   XP_063131548
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81681,349,431 - 81,440,439 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_006253462   ⟸   XM_006253400
- Peptide Label: isoform X1
- UniProtKB: M0R3X3 (UniProtKB/TrEMBL),   A6IWD5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253465   ⟸   XM_006253403
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A0S7 (UniProtKB/TrEMBL),   A6IWD5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000064046   ⟸   ENSRNOT00000073971
RefSeq Acc Id: ENSRNOP00000085722   ⟸   ENSRNOT00000119970
RefSeq Acc Id: NP_001413962   ⟸   NM_001427033
- UniProtKB: A6IWD5 (UniProtKB/TrEMBL),   M0R3X3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131548   ⟸   XM_063275478
- Peptide Label: isoform X2
Protein Domains
DH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R3X3-F1-model_v2 AlphaFold M0R3X3 1-1133 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565043 AgrOrtholog
BioCyc Gene G2FUF-10749 BioCyc
Ensembl Genes ENSRNOG00000012561 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000073971.4 UniProtKB/TrEMBL
  ENSRNOT00000119970.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.900.10 UniProtKB/TrEMBL
InterPro ARHGEF10/ARHGEF17 UniProtKB/TrEMBL
  DBL_dom_sf UniProtKB/TrEMBL
  DH-domain UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report rno:306618 UniProtKB/TrEMBL
NCBI Gene 306618 ENTREZGENE
PANTHER PTHR12877 UniProtKB/TrEMBL
  PTHR12877:SF14 UniProtKB/TrEMBL
Pfam PH_19 UniProtKB/TrEMBL
  RhoGEF UniProtKB/TrEMBL
  WD40_2 UniProtKB/TrEMBL
PhenoGen Arhgef10 PhenoGen
PROSITE DH_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000012561 RatGTEx
SMART RhoGEF UniProtKB/TrEMBL
Superfamily-SCOP DH-domain UniProtKB/TrEMBL
  PH domain-like UniProtKB/TrEMBL
  WD40_like UniProtKB/TrEMBL
UniProt A0A8I6A0S7 ENTREZGENE, UniProtKB/TrEMBL
  A6IWD5 ENTREZGENE, UniProtKB/TrEMBL
  M0R3X3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-19 Arhgef10  Rho guanine nucleotide exchange factor 10  Arhgef10  Rho guanine nucleotide exchange factor (GEF) 10  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-11-25 Arhgef10  Rho guanine nucleotide exchange factor (GEF) 10  RGD1565043  similar to Rho guanine nucleotide exchange factor (GEF) 10  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1565043  similar to Rho guanine nucleotide exchange factor (GEF) 10   RGD1565043_predicted  similar to Rho guanine nucleotide exchange factor (GEF) 10 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1565043_predicted  similar to Rho guanine nucleotide exchange factor (GEF) 10 (predicted)  LOC306618  similar to Rho guanine nucleotide exchange factor (GEF) 10  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC306618  similar to Rho guanine nucleotide exchange factor (GEF) 10      Symbol and Name status set to provisional 70820 PROVISIONAL