Imported Disease Annotations - OMIATerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | retinal degeneration | | ISO | STK38L (Canis lupus familiaris) | 9068941 | Early retinal degeneration | OMIA | PMID:10409424 more ... | |
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Imported Disease Annotations - OMIATerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | retinal degeneration | | ISO | STK38L (Canis lupus familiaris) | 9068941 | Early retinal degeneration | OMIA | PMID:10409424 more ... | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
3. | Chemical genetic identification of NDR1/2 kinase substrates AAK1 and Rabin8 Uncovers their roles in dendrite arborization and spine development. | Ultanir SK, etal., Neuron. 2012 Mar 22;73(6):1127-42. doi: 10.1016/j.neuron.2012.01.019. Epub 2012 Mar 21. |
4. | MICAL-1 is a negative regulator of MST-NDR kinase signaling and apoptosis. | Zhou Y, etal., Mol Cell Biol. 2011 Sep;31(17):3603-15. doi: 10.1128/MCB.01389-10. Epub 2011 Jul 5. |
PMID:12477932 | PMID:15037617 | PMID:15067004 | PMID:15308672 | PMID:15632090 | PMID:18555663 |
Stk38l (Rattus norvegicus - Norway rat) |
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STK38L (Homo sapiens - human) |
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Stk38l (Mus musculus - house mouse) |
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Stk38l (Chinchilla lanigera - long-tailed chinchilla) |
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STK38L (Pan paniscus - bonobo/pygmy chimpanzee) |
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STK38L (Canis lupus familiaris - dog) |
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Stk38l (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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STK38L (Sus scrofa - pig) |
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STK38L (Chlorocebus sabaeus - green monkey) |
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Stk38l (Heterocephalus glaber - naked mole-rat) |
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Variants in Stk38l
274 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
RH138508 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 3 | 34 | 10 | 4 | 12 | 4 | 1 | 2 | 73 | 35 | 33 | 11 | 1 |
Low | 9 | 47 | 37 | 7 | 37 | 7 | 9 | 1 | 8 | 7 | |||
Below cutoff |
RefSeq Transcripts | NM_001083336 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_017592902 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039108393 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039108394 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063286725 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | BC160812 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
CH473964 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
EF444939 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000004 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000002502 ⟹ ENSRNOP00000002502 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000086813 ⟹ ENSRNOP00000068621 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000108452 ⟹ ENSRNOP00000083335 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001083336 ⟹ NP_001076805 | ||||||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_039108393 ⟹ XP_038964321 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039108394 ⟹ XP_038964322 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_063286725 ⟹ XP_063142795 | ||||||||
Type: | CODING | ||||||||
Position: |
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Protein RefSeqs | NP_001076805 | (Get FASTA) | NCBI Sequence Viewer |
XP_038964321 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038964322 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063142795 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAI60812 | (Get FASTA) | NCBI Sequence Viewer |
ABO26295 | (Get FASTA) | NCBI Sequence Viewer | |
EDM01408 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000002502 | ||
ENSRNOP00000002502.6 | |||
ENSRNOP00000068621.2 | |||
ENSRNOP00000083335.1 |
RefSeq Acc Id: | NP_001076805 ⟸ NM_001083336 |
- UniProtKB: | A0A0G2JT94 (UniProtKB/TrEMBL), A4GW50 (UniProtKB/TrEMBL), B1H211 (UniProtKB/TrEMBL), D4AA09 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000002502 ⟸ ENSRNOT00000002502 |
RefSeq Acc Id: | ENSRNOP00000068621 ⟸ ENSRNOT00000086813 |
RefSeq Acc Id: | XP_038964321 ⟸ XM_039108393 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0A0G2JT94 (UniProtKB/TrEMBL), A4GW50 (UniProtKB/TrEMBL), B1H211 (UniProtKB/TrEMBL), D4AA09 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038964322 ⟸ XM_039108394 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0A0G2JT94 (UniProtKB/TrEMBL), A4GW50 (UniProtKB/TrEMBL), B1H211 (UniProtKB/TrEMBL), D4AA09 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | ENSRNOP00000083335 ⟸ ENSRNOT00000108452 |
RefSeq Acc Id: | XP_063142795 ⟸ XM_063286725 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A4GW50 (UniProtKB/TrEMBL), B1H211 (UniProtKB/TrEMBL), D4AA09 (UniProtKB/TrEMBL) |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-A4GW50-F1-model_v2 | AlphaFold | A4GW50 | 1-464 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13693507 | ||||||||
Promoter ID: | EPDNEW_R4030 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | Stk38l_1 | ||||||||
Description: | serine/threonine kinase 38 like | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:1564793 | AgrOrtholog |
BioCyc Gene | G2FUF-42425 | BioCyc |
Ensembl Genes | ENSRNOG00000001828 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000002502 | ENTREZGENE |
ENSRNOT00000002502.8 | UniProtKB/TrEMBL | |
ENSRNOT00000086813.2 | UniProtKB/TrEMBL | |
ENSRNOT00000108452.1 | UniProtKB/TrEMBL | |
Gene3D-CATH | Transferase(Phosphotransferase) domain 1 | UniProtKB/TrEMBL |
IMAGE_CLONE | IMAGE:7460150 | IMAGE-MGC_LOAD |
InterPro | AGC-kinase_C | UniProtKB/TrEMBL |
Kinase-like_dom | UniProtKB/TrEMBL | |
Pkinase_C | UniProtKB/TrEMBL | |
Prot_kinase_cat_dom | UniProtKB/TrEMBL | |
Protein_kinase_ATP_BS | UniProtKB/TrEMBL | |
Ser/Thr_kinase_AS | UniProtKB/TrEMBL | |
KEGG Report | rno:691337 | UniProtKB/TrEMBL |
MGC_CLONE | MGC:187219 | IMAGE-MGC_LOAD |
NCBI Gene | Stk38l | ENTREZGENE |
PANTHER | SERINE/THREONINE-PROTEIN KINASE | UniProtKB/TrEMBL |
SERINE/THREONINE-PROTEIN KINASE 38-LIKE | UniProtKB/TrEMBL | |
Pfam | Pkinase | UniProtKB/TrEMBL |
Pkinase_C | UniProtKB/TrEMBL | |
PhenoGen | Stk38l | PhenoGen |
PROSITE | AGC_KINASE_CTER | UniProtKB/TrEMBL |
PROTEIN_KINASE_ATP | UniProtKB/TrEMBL | |
PROTEIN_KINASE_DOM | UniProtKB/TrEMBL | |
PROTEIN_KINASE_ST | UniProtKB/TrEMBL | |
RatGTEx | ENSRNOG00000001828 | RatGTEx |
SMART | S_TKc | UniProtKB/TrEMBL |
Superfamily-SCOP | Kinase_like | UniProtKB/TrEMBL |
UniProt | A0A0G2JT94 | ENTREZGENE, UniProtKB/TrEMBL |
A0A8I5ZVV6_RAT | UniProtKB/TrEMBL | |
A4GW50 | ENTREZGENE, UniProtKB/TrEMBL | |
B1H211 | ENTREZGENE, UniProtKB/TrEMBL | |
D4AA09 | ENTREZGENE | |
UniProt Secondary | D4AA09 | UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2013-05-24 | Stk38l | serine/threonine kinase 38 like | LOC686663 | similar to putative serine/threonine kinase NDR54 | Data merged from RGD:1594985 | 1643240 | APPROVED |
2008-09-22 | Stk38l | serine/threonine kinase 38 like | RGD1564793 | similar to KIAA0965 protein | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2008-05-05 | RGD1564793 | similar to KIAA0965 protein | LOC691337 | similar to putative serine/threonine kinase NDR54 | Data merged from RGD:1585080 | 737654 | APPROVED |
2008-04-30 | RGD1564793 | similar to KIAA0965 protein | RGD1564793_predicted | similar to KIAA0965 protein (predicted) | 'predicted' is removed | 2292626 | APPROVED |
2006-11-20 | LOC686663 | similar to putative serine/threonine kinase NDR54 | Symbol and Name status set to provisional | 70820 | PROVISIONAL | ||
2006-11-19 | LOC691337 | similar to putative serine/threonine kinase NDR54 | Symbol and Name status set to provisional | 70820 | PROVISIONAL | ||
2006-03-07 | RGD1564793_predicted | similar to KIAA0965 protein (predicted) | LOC500365 | similar to KIAA0965 protein | Symbol and Name status set to approved | 1299863 | APPROVED |
2006-02-09 | LOC500365 | similar to KIAA0965 protein | Symbol and Name status set to provisional | 70820 | PROVISIONAL |