Jade3 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | X | 4,222,369 - 4,424,164 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | X | 1,668,873 - 1,848,781 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | X | 1,669,930 - 1,845,138 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | X | 1,704,728 - 1,871,527 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | X | 5,180,427 - 5,347,241 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | X | 1,495,715 - 1,655,190 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | X | 1,885,927 - 2,038,639 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | X | 1,885,927 - 1,952,111 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | X | 2,678,420 - 2,835,212 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | X | 13,097,957 - 13,199,008 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | X | 2,234,755 - 2,391,006 (-) | NCBI | | Celera | | | Cytogenetic Map | X | q11 | NCBI | | | | |
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JADE3 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | X | 46,912,301 - 47,061,242 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | X | 46,912,276 - 47,061,242 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | X | 46,771,736 - 46,920,641 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | X | 46,656,680 - 46,805,585 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | X | 46,528,121 - 46,676,894 | NCBI | | | | | Celera | X | 50,964,282 - 51,112,586 (+) | NCBI | | Celera | | | Cytogenetic Map | X | p11.3 | NCBI | | | | | HuRef | X | 44,482,963 - 44,631,372 (+) | NCBI | | HuRef | | | CHM1_1 | X | 46,803,849 - 46,952,483 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | X | 46,319,282 - 46,468,244 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Jade3 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | X | 20,291,611 - 20,386,178 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | X | 20,291,927 - 20,386,178 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | X | 20,425,312 - 20,519,939 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | X | 20,425,688 - 20,519,939 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | X | 20,037,653 - 20,095,022 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | X | 19,617,486 - 19,674,855 (+) | NCBI | | MGSCv36 | mm8 | | Celera | X | 18,591,827 - 18,649,001 (+) | NCBI | | Celera | | | Cytogenetic Map | X | A1.3 | NCBI | | | | | cM Map | X | 15.9 | NCBI | | | | |
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Jade3 (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955516 | 998,725 - 1,061,279 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955516 | 998,854 - 1,133,013 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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JADE3 (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | X | 48,537,574 - 48,686,796 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | X | 48,540,951 - 48,690,168 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | X | 39,347,038 - 39,496,236 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | X | 47,206,925 - 47,354,732 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | X | 47,278,395 - 47,354,732 (+) | Ensembl | panpan1.1 | | panPan2 | |
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JADE3 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | X | 40,545,474 - 40,682,593 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | X | 40,521,569 - 40,680,536 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | X | 14,921,015 - 15,058,046 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | X | 40,679,883 - 40,817,007 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | X | 40,654,112 - 40,815,685 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | X | 40,667,759 - 40,804,843 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | X | 40,655,367 - 40,792,486 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | X | 40,748,457 - 40,885,540 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Jade3 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | X | 32,886,915 - 33,022,330 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936502 | 12,727,649 - 12,863,083 (+) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936502 | 12,727,685 - 12,863,074 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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JADE3 (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | X | 41,579,764 - 41,714,706 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | X | 41,579,565 - 41,714,705 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | X | 46,416,965 - 46,551,694 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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JADE3 (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | X | 44,119,480 - 44,266,268 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | X | 44,192,385 - 44,266,329 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666076 | 9,373,267 - 9,522,588 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Jade3 (Heterocephalus glaber - naked mole-rat) |
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