Ubr4 (ubiquitin protein ligase E3 component n-recognin 4) - Rat Genome Database

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Gene: Ubr4 (ubiquitin protein ligase E3 component n-recognin 4) Rattus norvegicus
Analyze
Symbol: Ubr4
Name: ubiquitin protein ligase E3 component n-recognin 4
RGD ID: 1563121
Description: Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in negative regulation of fatty acid biosynthetic process and ubiquitin-dependent protein catabolic process. Predicted to be located in membrane. Predicted to be active in centrosome; cytosol; and nucleoplasm. Orthologous to human UBR4 (ubiquitin protein ligase E3 component n-recognin 4); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: E3 ubiquitin-protein ligase UBR4; N-recognin-4; Rbaf600; retinoblastoma-associated factor 600; RING-type E3 ubiquitin transferase UBR4; zinc finger UBR1-type protein 1; ZUBR1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85156,919,029 - 157,027,127 (+)NCBIGRCr8
mRatBN7.25151,635,825 - 151,743,931 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5151,635,868 - 151,743,784 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5154,334,535 - 154,442,617 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05156,108,899 - 156,216,983 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05156,089,831 - 156,197,923 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05157,848,162 - 157,956,137 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5157,848,206 - 157,956,132 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05161,587,889 - 161,695,849 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45158,181,988 - 158,289,896 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5150,015,471 - 150,123,406 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
1,2-dimethylhydrazine  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
aflatoxin B1  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
bazedoxifene  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
CGP 52608  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
cocaine  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (EXP)
dicrotophos  (ISO)
endosulfan  (ISO)
ethanol  (ISO)
fenvalerate  (EXP)
fipronil  (EXP)
flutamide  (EXP)
formaldehyde  (EXP)
FR900359  (ISO)
fulvestrant  (ISO)
glyphosate  (EXP)
hexadecanoic acid  (ISO)
hydrogen peroxide  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
menadione  (ISO)
mercury dichloride  (EXP)
Mesaconitine  (EXP)
methamphetamine  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
miconazole  (ISO)
nefazodone  (EXP)
paracetamol  (ISO)
perfluorohexanesulfonic acid  (ISO)
pirinixic acid  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tebuconazole  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
tunicamycin  (ISO)
valproic acid  (EXP)
vinclozolin  (EXP)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centrosome  (IBA,IEA,ISO)
cytosol  (IBA,IEA,ISO)
membrane  (IEA)
nucleoplasm  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:19182904   PMID:19946888   PMID:22871113   PMID:23861403   PMID:23932781   PMID:25034033   PMID:26514267   PMID:32357304  


Genomics

Comparative Map Data
Ubr4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85156,919,029 - 157,027,127 (+)NCBIGRCr8
mRatBN7.25151,635,825 - 151,743,931 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5151,635,868 - 151,743,784 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5154,334,535 - 154,442,617 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05156,108,899 - 156,216,983 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05156,089,831 - 156,197,923 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05157,848,162 - 157,956,137 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5157,848,206 - 157,956,132 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05161,587,889 - 161,695,849 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45158,181,988 - 158,289,896 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5150,015,471 - 150,123,406 (+)NCBICelera
Cytogenetic Map5q36NCBI
UBR4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38119,074,510 - 19,210,266 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl119,074,510 - 19,210,266 (-)EnsemblGRCh38hg38GRCh38
GRCh37119,401,004 - 19,536,760 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36119,273,587 - 19,409,333 (-)NCBINCBI36Build 36hg18NCBI36
Celera117,728,031 - 17,863,733 (-)NCBICelera
Cytogenetic Map1p36.13NCBI
HuRef117,647,560 - 17,783,291 (-)NCBIHuRef
CHM1_1119,510,241 - 19,646,027 (-)NCBICHM1_1
T2T-CHM13v2.0118,898,062 - 19,033,778 (-)NCBIT2T-CHM13v2.0
Ubr4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394139,107,970 - 139,216,844 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4139,079,920 - 139,216,899 (+)EnsemblGRCm39 Ensembl
GRCm384139,380,659 - 139,489,533 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4139,352,609 - 139,489,588 (+)EnsemblGRCm38mm10GRCm38
MGSCv374138,936,574 - 139,045,448 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364138,936,574 - 139,045,510 (+)NCBIMGSCv36mm8
Celera4141,168,298 - 141,277,468 (+)NCBICelera
Cytogenetic Map4D3NCBI
cM Map470.66NCBI
Ubr4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495552757,335 - 185,727 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495552757,335 - 185,727 (+)NCBIChiLan1.0ChiLan1.0
UBR4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21207,905,024 - 208,041,492 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11207,021,725 - 207,158,238 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0118,032,528 - 18,168,954 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1119,079,774 - 19,215,578 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl119,079,779 - 19,215,578 (-)Ensemblpanpan1.1panPan2
UBR4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1279,403,336 - 79,536,385 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl279,403,351 - 79,536,208 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha275,918,229 - 76,050,601 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0280,026,056 - 80,158,846 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl280,026,058 - 80,158,843 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1276,786,822 - 76,919,297 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0277,797,029 - 77,929,785 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0278,867,492 - 78,999,935 (+)NCBIUU_Cfam_GSD_1.0
Ubr4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505839,548,521 - 39,666,935 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364745,373,186 - 5,493,635 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364745,373,303 - 5,492,950 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBR4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl677,568,415 - 77,708,109 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1677,568,409 - 77,707,991 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2671,612,511 - 71,632,514 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UBR4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120113,354,561 - 113,493,936 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20113,355,676 - 113,494,386 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660332,673,759 - 2,811,993 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ubr4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247644,223,784 - 4,358,885 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247644,223,784 - 4,358,923 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ubr4
355 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:30
Count of miRNA genes:22
Interacting mature miRNAs:30
Transcripts:ENSRNOT00000039663
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5106906205151906205Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5106906205151906205Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5106906205151906205Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5106906205151906205Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5106906205151906205Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5108845856153845856Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5108845856153845856Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)5108938288153938288Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5111416838156416838Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5111416838156416838Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5111416838156416838Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132717196165560427Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5143069996166846814Rat
2302369Scl60Serum cholesterol level QTL 603.13blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)5143608201161165651Rat
631263Cm24Cardiac mass QTL 243.5heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)5143799107158428037Rat
1300119Bp180Blood pressure QTL 1803.82arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5144358090157869054Rat
2313096Bmd78Bone mineral density QTL 783.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)5144377876161317411Rat
1298090Bp155Blood pressure QTL 1553.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)5151006154161165494Rat
1354631Swd2Spike wave discharge measurement QTL 23.640.0002brain electrophysiology trait (VT:0010557)brain total spike-and-wave discharge duration (CMO:0001740)5151113452164465185Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5151113452166875058Rat

Markers in Region
AI136251  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25151,669,609 - 151,669,801 (+)MAPPERmRatBN7.2
Rnor_6.05157,881,893 - 157,882,084NCBIRnor6.0
Rnor_5.05161,621,605 - 161,621,796UniSTSRnor5.0
RGSC_v3.45158,215,729 - 158,215,920UniSTSRGSC3.4
Celera5150,049,232 - 150,049,423UniSTS
RH 3.4 Map51047.2UniSTS
Cytogenetic Map5q36UniSTS
RH136771  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25151,743,805 - 151,743,898 (+)MAPPERmRatBN7.2
Rnor_6.05157,956,013 - 157,956,105NCBIRnor6.0
Rnor_5.05161,695,725 - 161,695,817UniSTSRnor5.0
RGSC_v3.45158,289,918 - 158,290,010UniSTSRGSC3.4
Celera5150,123,424 - 150,123,516UniSTS
Cytogenetic Map5q36UniSTS
RH138653  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25151,646,049 - 151,646,231 (+)MAPPERmRatBN7.2
Rnor_6.05157,858,388 - 157,858,569NCBIRnor6.0
Rnor_5.05161,598,100 - 161,598,281UniSTSRnor5.0
RGSC_v3.45158,192,171 - 158,192,352UniSTSRGSC3.4
Celera5150,025,657 - 150,025,838UniSTS
RH 3.4 Map51044.7UniSTS
Cytogenetic Map5q36UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 41 55 39 19 39 8 11 74 35 41 11 8
Low 2 2 2 2
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000039663   ⟹   ENSRNOP00000032156
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5151,635,868 - 151,743,784 (+)Ensembl
Rnor_6.0 Ensembl5157,848,206 - 157,955,991 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000082138   ⟹   ENSRNOP00000069008
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5151,635,868 - 151,743,784 (+)Ensembl
Rnor_6.0 Ensembl5157,848,211 - 157,956,132 (+)Ensembl
RefSeq Acc Id: NM_001395108   ⟹   NP_001382037
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85156,919,085 - 157,027,127 (+)NCBI
mRatBN7.25151,635,881 - 151,743,931 (+)NCBI
RefSeq Acc Id: XM_063287793   ⟹   XP_063143863
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85156,919,031 - 157,027,121 (+)NCBI
RefSeq Acc Id: XM_063287794   ⟹   XP_063143864
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85156,919,031 - 157,027,121 (+)NCBI
RefSeq Acc Id: XM_063287795   ⟹   XP_063143865
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85156,919,031 - 157,027,121 (+)NCBI
RefSeq Acc Id: XM_063287796   ⟹   XP_063143866
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85156,919,031 - 157,027,121 (+)NCBI
RefSeq Acc Id: XM_063287797   ⟹   XP_063143867
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85156,919,031 - 157,027,121 (+)NCBI
RefSeq Acc Id: XM_063287798   ⟹   XP_063143868
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85156,919,031 - 157,027,121 (+)NCBI
RefSeq Acc Id: XM_063287799   ⟹   XP_063143869
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85156,919,031 - 157,027,121 (+)NCBI
RefSeq Acc Id: XM_063287800   ⟹   XP_063143870
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85156,919,031 - 157,027,121 (+)NCBI
RefSeq Acc Id: XM_063287801   ⟹   XP_063143871
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85156,919,029 - 157,001,964 (+)NCBI
RefSeq Acc Id: XM_063287802   ⟹   XP_063143872
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85156,969,808 - 157,027,121 (+)NCBI
RefSeq Acc Id: XM_063287803   ⟹   XP_063143873
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85156,919,031 - 157,027,121 (+)NCBI
RefSeq Acc Id: ENSRNOP00000069008   ⟸   ENSRNOT00000082138
RefSeq Acc Id: ENSRNOP00000032156   ⟸   ENSRNOT00000039663
RefSeq Acc Id: NP_001382037   ⟸   NM_001395108
- UniProtKB: A0A0G2JU89 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143871   ⟸   XM_063287801
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063143863   ⟸   XM_063287793
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063143866   ⟸   XM_063287796
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063143864   ⟸   XM_063287794
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063143868   ⟸   XM_063287798
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063143869   ⟸   XM_063287799
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063143867   ⟸   XM_063287797
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063143865   ⟸   XM_063287795
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063143870   ⟸   XM_063287800
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063143873   ⟸   XM_063287803
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063143872   ⟸   XM_063287802
- Peptide Label: isoform X10
Protein Domains
UBR-type

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694211
Promoter ID:EPDNEW_R4733
Type:initiation region
Name:Ubr4_1
Description:ubiquitin protein ligase E3 component n-recognin 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05157,848,224 - 157,848,284EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563121 AgrOrtholog
BioCyc Gene G2FUF-39413 BioCyc
Ensembl Genes ENSRNOG00000018183 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000039663 ENTREZGENE
  ENSRNOT00000039663.6 UniProtKB/TrEMBL
  ENSRNOT00000082138.2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7365572 IMAGE-MGC_LOAD
InterPro ARM-type_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  E3_Ub_ligase_UBR4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  E3_UBR4_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBR4-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBR4-like_UBR-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_UBR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:109584 IMAGE-MGC_LOAD
NCBI Gene 313658 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE UBR4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR21725 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam E3_UbLigase_R4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  E3_UBR4_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-UBR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ubr4 PhenoGen
PROSITE ZF_UBR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000018183 RatGTEx
SMART ZnF_UBR1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50978 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JU89 ENTREZGENE, UniProtKB/TrEMBL
  F1LQI5_RAT UniProtKB/TrEMBL
  Q2TL32 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q5BJM4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-04-23 Ubr4  ubiquitin protein ligase E3 component n-recognin 4  Rbaf600  ZUBR1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 Rbaf600  ZUBR1      Symbol and Name status set to provisional 70820 PROVISIONAL