Elavl4 (ELAV like RNA binding protein 4)

Gene: Elavl4 (ELAV like RNA binding protein 4) Rattus norvegicus

Analyze

Symbol:

Elavl4

Name:

ELAV like RNA binding protein 4

RGD ID:

1560027

Description:

Enables mRNA 3'-UTR binding activity. Involved in several processes, including positive regulation of dendrite development; post-transcriptional regulation of gene expression; and response to cocaine. Located in several cellular components, including apical dendrite; growth cone; and ribosome. Is active in glutamatergic synapse. Biomarker of hypothyroidism; learning disability; sciatic neuropathy; and status epilepticus. Orthologous to human ELAVL4 (ELAV like RNA binding protein 4); INTERACTS WITH 6-propyl-2-thiouracil; acrylamide; amitrole.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4; ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D); ELAV like neuron-specific RNA binding protein 4; ELAV-like protein 4; hu-antigen D; HuD; LOC298359; paraneoplastic encephalomyelitis antigen HuD; r-HuD; RGD1561943; similar to ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ELAVL4 (ELAV like RNA binding protein 4)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, PhylomeDB
Mus musculus (house mouse):	Elavl4 (ELAV like RNA binding protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Elavl4 (ELAV like RNA binding protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ELAVL4 (ELAV like RNA binding protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ELAVL4 (ELAV like RNA binding protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Elavl4 (ELAV like RNA binding protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ELAVL4 (ELAV like RNA binding protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ELAVL4 (ELAV like RNA binding protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Elavl4 (ELAV like RNA binding protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ELAVL4 (ELAV like RNA binding protein 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Elavl4 (ELAV like RNA binding protein 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	elavl4 (ELAV like neuron-specific RNA binding protein 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	fne	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Rbp9	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	exc-7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	elavl4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	130,285,418 - 130,429,106 (-)	NCBI		GRCr8
mRatBN7.2	5	125,056,848 - 125,200,543 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	125,056,848 - 125,200,446 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	127,668,033 - 127,750,245 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	129,391,090 - 129,473,304 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	129,442,384 - 129,524,600 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	130,001,387 - 130,144,557 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	130,001,372 - 130,085,838 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	133,837,537 - 133,979,844 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	131,672,012 - 131,767,950 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	123,783,448 - 123,864,325 (-)	NCBI		Celera
Cytogenetic Map	5	q35	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

High Myopia (ISO)

hypothyroidism (IEP)

learning disability (IEP)

sciatic neuropathy (IEP)

status epilepticus (IEP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

3',5'-cyclic UMP (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

ammonium chloride (EXP)

arotinoid acid (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

CHIR 99021 (ISO)

chlorpyrifos (EXP,ISO)

cortisol (ISO)

dioxygen (EXP)

epoxiconazole (ISO)

ethanol (ISO)

fenvalerate (EXP)

folic acid (ISO)

indole-3-methanol (EXP)

L-ascorbic acid (ISO)

L-ascorbic acid 2-phosphate (ISO)

lead diacetate (ISO)

maneb (ISO)

methimazole (EXP)

mitoxantrone (ISO)

N-methyl-4-phenylpyridinium (ISO)

paraquat (ISO)

perfluorohexanesulfonic acid (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

thioacetamide (EXP)

trichloroethene (EXP)

valproic acid (ISO)

XAV939 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

3'-UTR-mediated mRNA stabilization (ISO,ISS)

associative learning (IEP)

cellular response to nerve growth factor stimulus (IEP)

cerebral cortex neuron differentiation (ISO)

dendrite morphogenesis (ISO)

learning (ISO)

locomotory behavior (ISO)

mRNA processing (IEA)

nervous system development (IEP)

neuron differentiation (IMP)

positive regulation of 3'-UTR-mediated mRNA stabilization (ISO,ISS)

positive regulation of dendrite development (IMP)

regeneration (IEP)

regulation of mRNA stability (IMP)

regulation of translation at postsynapse (IDA,IMP)

response to cocaine (IEP)

response to endoplasmic reticulum stress (IEP)

RNA processing (ISO,ISS)

RNA splicing (IEA)

Cellular Component

apical dendrite (IDA)

axon (ISO)

cytoplasm (IDA,IEA,ISO)

dendrite (IDA,IEA,ISO)

glutamatergic synapse (IDA,IMP)

growth cone (IDA,IEA)

neuronal cell body (IDA)

nuclear envelope (IDA)

perikaryon (IEA)

postsynapse (IEA)

ribonucleoprotein complex (IEA)

ribosome (IDA)

Molecular Function

mRNA 3'-UTR AU-rich region binding (ISO,ISS)

mRNA 3'-UTR binding (IDA,ISO)

mRNA binding (IDA,ISO)

poly(A) binding (ISO,ISS)

pre-mRNA intronic pyrimidine-rich binding (ISO,ISS)

protein binding (IPI,ISO)

RNA binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Increased expression and localization of the RNA-binding protein HuD and GAP-43 mRNA to cytoplasmic granules in DRG neurons during nerve regeneration.	Anderson KD, etal., Exp Neurol. 2003 Sep;183(1):100-8.
2.	Embryonic lethal abnormal vision-like RNA-binding proteins regulate neurite outgrowth and tau expression in PC12 cells.	Aranda-Abreu GE, etal., J Neurosci. 1999 Aug 15;19(16):6907-17.
3.	Coordinated expression of HuD and GAP-43 in hippocampal dentate granule cells during developmental and adult plasticity.	Bolognani F, etal., Neurochem Res. 2007 Dec;32(12):2142-51. Epub 2007 Jun 19.
4.	Dendritic localization of the RNA-binding protein HuD in hippocampal neurons: association with polysomes and upregulation during contextual learning.	Bolognani F, etal., Neurosci Lett. 2004 Nov 23;371(2-3):152-7.
5.	HuD distribution changes in response to heat shock but not neurotrophic stimulation.	Burry RW and Smith CL, J Histochem Cytochem. 2006 Oct;54(10):1129-38. Epub 2006 Jun 26.
6.	Expression of mRNA for the elav-like neural-specific RNA binding protein, HuD, during nervous system development.	Clayton GH, etal., Brain Res Dev Brain Res. 1998 Aug 8;109(2):271-80.
7.	Neuronal HuD gene encoding a mRNA stability regulator is transcriptionally repressed by thyroid hormone.	Cuadrado A, etal., J Neurochem. 2003 Aug;86(3):763-73.
8.	Expression of HuD protein is essential for initial phase of neuronal differentiation in rat pheochromocytoma PC12 cells.	Dobashi Y, etal., Biochem Biophys Res Commun. 1998 Mar 6;244(1):226-9.
9.	The survival of motor neuron (SMN) protein interacts with the mRNA-binding protein HuD and regulates localization of poly(A) mRNA in primary motor neuron axons.	Fallini C, etal., J Neurosci. 2011 Mar 9;31(10):3914-25. doi: 10.1523/JNEUROSCI.3631-10.2011.
10.	PKC activation during training restores mushroom spine synapses and memory in the aged rat.	Hongpaisan J, etal., Neurobiol Dis. 2013 Jul;55:44-62. doi: 10.1016/j.nbd.2013.03.012. Epub 2013 Mar 29.
11.	Protein kinase C stimulates HuD-mediated mRNA stability and protein expression of neurotrophic factors and enhances dendritic maturation of hippocampal neurons in culture.	Lim CS and Alkon DL, Hippocampus. 2012 Dec;22(12):2303-19. doi: 10.1002/hipo.22048. Epub 2012 Jun 27.
12.	Increase of the RNA-binding protein HuD and posttranscriptional up-regulation of the GAP-43 gene during spatial memory.	Pascale A, etal., Proc Natl Acad Sci U S A. 2004 Feb 3;101(5):1217-22. Epub 2004 Jan 26.
13.	GOA pipeline	RGD automated data pipeline
14.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
15.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
16.	GAP-43 mRNA in growth cones is associated with HuD and ribosomes.	Smith CL, etal., J Neurobiol. 2004 Nov;61(2):222-35.
17.	Activity-dependent expression of ELAV/Hu RBPs and neuronal mRNAs in seizure and cocaine brain.	Tiruchinapalli DM, etal., J Neurochem. 2008 Dec;107(6):1529-43. doi: 10.1111/j.1471-4159.2008.05718.x. Epub 2008 Nov 6.
18.	HuD interacts with Bdnf mRNA and is essential for activity-induced BDNF synthesis in dendrites.	Vanevski F and Xu B, PLoS One. 2015 Feb 18;10(2):e0117264. doi: 10.1371/journal.pone.0117264. eCollection 2015.
19.	A HuD-ZBP1 ribonucleoprotein complex localizes GAP-43 mRNA into axons through its 3' untranslated region AU-rich regulatory element.	Yoo S, etal., J Neurochem. 2013 Sep;126(6):792-804. doi: 10.1111/jnc.12266. Epub 2013 Apr 30.
20.	Melatonin-mediated insulin synthesis during endoplasmic reticulum stress involves HuD expression in rat insulinoma INS-1E cells.	Yoo YM J Pineal Res. 2013 Sep;55(2):207-20. doi: 10.1111/jpi.12064. Epub 2013 May 28.

Additional References at PubMed

PMID:8717365	PMID:10710437	PMID:12034726	PMID:12477932	PMID:16508003	PMID:17534028	PMID:18769135	PMID:19115409	PMID:21139978	PMID:22871113	PMID:23836929	PMID:24599466
PMID:25944900	PMID:26152301	PMID:28849006	PMID:28871047	PMID:31173231

Genomics

Comparative Map Data

Elavl4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	130,285,418 - 130,429,106 (-)	NCBI		GRCr8
mRatBN7.2	5	125,056,848 - 125,200,543 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	125,056,848 - 125,200,446 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	127,668,033 - 127,750,245 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	129,391,090 - 129,473,304 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	129,442,384 - 129,524,600 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	130,001,387 - 130,144,557 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	130,001,372 - 130,085,838 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	133,837,537 - 133,979,844 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	131,672,012 - 131,767,950 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	123,783,448 - 123,864,325 (-)	NCBI		Celera
Cytogenetic Map	5	q35	NCBI

ELAVL4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	50,048,055 - 50,203,772 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	50,024,029 - 50,203,772 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	50,513,727 - 50,669,444 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	50,347,225 - 50,439,648 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	50,286,657 - 50,379,074	NCBI
Celera	1	48,799,541 - 48,953,474 (+)	NCBI		Celera
Cytogenetic Map	1	p33-p32.3	NCBI
HuRef	1	48,632,219 - 48,786,277 (+)	NCBI		HuRef
CHM1_1	1	50,630,724 - 50,784,575 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	49,927,008 - 50,082,746 (+)	NCBI		T2T-CHM13v2.0

Elavl4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	110,060,934 - 110,209,127 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	110,060,919 - 110,209,106 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	110,203,737 - 110,351,939 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	110,203,722 - 110,351,909 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	109,876,342 - 110,024,516 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	109,701,669 - 109,785,443 (-)	NCBI		MGSCv36	mm8
Celera	4	108,542,389 - 108,690,370 (-)	NCBI		Celera
Cytogenetic Map	4	C7	NCBI
cM Map	4	51.42	NCBI

Elavl4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955464	8,699,088 - 8,788,878 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955464	8,699,142 - 8,847,289 (-)	NCBI	ChiLan1.0	ChiLan1.0

ELAVL4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	176,667,027 - 176,823,109 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	175,807,675 - 175,963,772 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	49,288,364 - 49,444,457 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	50,795,037 - 50,951,058 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	50,853,276 - 50,951,058 (+)	Ensembl	panpan1.1		panPan2

ELAVL4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	10,885,161 - 10,977,383 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	10,887,347 - 11,027,621 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	11,035,584 - 11,127,727 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	11,021,674 - 11,113,864 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	11,023,885 - 11,165,914 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	10,821,693 - 10,912,118 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	10,910,280 - 11,000,453 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	10,927,186 - 11,017,414 (-)	NCBI		UU_Cfam_GSD_1.0

Elavl4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	64,929,747 - 65,066,032 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936522	10,349,571 - 10,486,427 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936522	10,349,684 - 10,435,963 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ELAVL4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	161,785,770 - 161,928,910 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	161,784,146 - 161,928,953 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

ELAVL4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	82,712,987 - 82,869,013 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	82,712,944 - 82,806,387 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	34,379,488 - 34,475,682 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Elavl4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624859	2,874,945 - 3,023,001 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624859	2,875,652 - 3,023,142 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Elavl4
524 total Variants

miRNA Target Status

Confirmed Target Of

miRNA Gene	Mature miRNA	Method Name	Result Type	Data Type	Support Type	PMID
Mir141	rno-miR-141-3p	Mirtarbase	external_info	qRT-PCR	Functional MTI (Weak)	20584986
Mir21	rno-miR-21-5p	Mirtarbase	external_info	qRT-PCR	Functional MTI (Weak)	20584986

Predicted Target Of

	Summary Value
Count of predictions:	27
Count of miRNA genes:	24
Interacting mature miRNAs:	27
Transcripts:	ENSRNOT00000035252
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	1	131345958	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	31663789	131345958	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	35189153	141643988	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40128307	148607290	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	43726656	129132602	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	46711509	161317411	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	50328551	141643988	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55805606	132207589	Rat
1358895	Bp254	Blood pressure QTL 254	3.6	0.0003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	58829236	128034027	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	59793399	143070159	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	60293434	161481680	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	69540295	151018848	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	82394392	166664054	Rat
1298086	Bp156	Blood pressure QTL 156			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	84132602	129132602	Rat
7411601	Foco12	Food consumption QTL 12	19.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	87468046	132468046	Rat
7411564	Bw135	Body weight QTL 135		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	87468046	132468046	Rat
7411582	Foco3	Food consumption QTL 3	7.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	87468046	132468046	Rat
6903316	Bw113	Body weight QTL 113	2	0.0103	body mass (VT:0001259)	body weight (CMO:0000012)	5	87765973	132765973	Rat
1358889	Bp261	Blood pressure QTL 261	2.86		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	90067849	128034027	Rat
1358909	Kidm25	Kidney mass QTL 25	1.87		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	90067849	128034027	Rat
631527	Tls1	T-lymphoma susceptibility QTL 1	0	0.001	thymus integrity trait (VT:0010555)	post-insult time to onset of T-cell lymphoma (CMO:0001907)	5	90450144	135450144	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	94858972	143070159	Rat
1331796	Thshl2	Thyroid stimulating hormone level QTL 2	2.3		blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	5	97059760	147465714	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	97570330	136479578	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	99216724	148607142	Rat
1578673	Bmd13	Bone mineral density QTL 13	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	5	103689353	148689353	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	105999803	150999803	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	106906205	151906205	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	106906205	151906205	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	106906205	151906205	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	106906205	151906205	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	106906205	151906205	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	108845856	153845856	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	108845856	153845856	Rat
8657050	Bw146	Body weight QTL 146	19.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	108938288	153938288	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	111416838	156416838	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	111416838	156416838	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	111416838	156416838	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	111416838	156416838	Rat
7794739	Bp372	Blood pressure QTL 372		0.0058	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	117913688	125222967	Rat
1582230	Bw78	Body weight QTL 78	3.2	0.0016	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	5	119085612	128034027	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	120740824	143608494	Rat
2293642	Bss37	Bone structure and strength QTL 37	4.64	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	120740824	151018848	Rat
1641920	Colcs1	Colorectal carcinoma susceptibility QTL 1	2.99	0.0055	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	5	121846814	166846814	Rat
7394710	Emca12	Estrogen-induced mammary cancer QTL 12			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	124160767	133749643	Rat
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	124965598	166875058	Rat

Markers in Region

BB464020

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	125,057,610 - 125,057,695 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	130,002,150 - 130,002,234	NCBI	Rnor6.0
Rnor_5.0	5	133,838,300 - 133,838,384	UniSTS	Rnor5.0
RGSC_v3.4	5	131,670,388 - 131,670,472	UniSTS	RGSC3.4
Celera	5	123,784,211 - 123,784,295	UniSTS
Cytogenetic Map	5	q35	UniSTS

RH131794

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	125,067,409 - 125,067,603 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	130,011,948 - 130,012,141	NCBI	Rnor6.0
Rnor_5.0	5	133,848,098 - 133,848,291	UniSTS	Rnor5.0
RGSC_v3.4	5	131,680,186 - 131,680,379	UniSTS	RGSC3.4
Celera	5	123,794,010 - 123,794,203	UniSTS
RH 3.4 Map	5	820.9	UniSTS
Cytogenetic Map	5	q35	UniSTS

PMC337033P2

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	125,059,245 - 125,059,374 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	130,003,785 - 130,003,913	NCBI	Rnor6.0
Rnor_5.0	5	133,839,935 - 133,840,063	UniSTS	Rnor5.0
RGSC_v3.4	5	131,672,023 - 131,672,151	UniSTS	RGSC3.4
Celera	5	123,785,846 - 123,785,974	UniSTS
Cytogenetic Map	5	q35	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium									74		5
Low	3	22	20	14		14				16	22	2
Below cutoff		14	15	6	10	6	6	8		3	14	9	6

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001077651	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238591	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238593	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238594	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763893	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593551	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110515	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110516	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288153	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288154	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288155	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288156	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288157	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC158558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	S83320	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000035252 ⟹ ENSRNOP00000037614

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	125,056,848 - 125,139,100 (-)	Ensembl
Rnor_6.0 Ensembl	5	130,001,372 - 130,085,838 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000098972 ⟹ ENSRNOP00000096475

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	125,058,877 - 125,145,091 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000101036 ⟹ ENSRNOP00000076930

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	125,059,431 - 125,200,446 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000101531 ⟹ ENSRNOP00000095267

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	125,056,848 - 125,140,002 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000104896 ⟹ ENSRNOP00000079852

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	125,056,848 - 125,104,518 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000108484 ⟹ ENSRNOP00000090516

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	125,058,877 - 125,142,708 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000109917 ⟹ ENSRNOP00000086190

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	125,059,431 - 125,139,100 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000110462 ⟹ ENSRNOP00000093173

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	125,058,877 - 125,104,799 (-)	Ensembl

RefSeq Acc Id:

NM_001077651 ⟹ NP_001071119

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	130,285,418 - 130,367,663 (-)	NCBI
mRatBN7.2	5	125,056,848 - 125,139,100 (-)	NCBI
Rnor_6.0	5	130,001,387 - 130,085,772 (-)	NCBI
Rnor_5.0	5	133,837,537 - 133,979,844 (-)	NCBI
RGSC_v3.4	5	131,672,012 - 131,767,950 (-)	RGD
Celera	5	123,783,448 - 123,864,325 (-)	NCBI

Sequence:

show sequence

GGCTTGTATGTGTAGCTTGAGTTGTTGCTTCCTTCTCTGGGCAGCAGCTCTGTAAGAAGGGAAT
GTCGGCTTTTACATAACGTTCCTCTCTGCTTTTGACACACTGTGTGAGGGTCCATCTTCTGATC
ACAGATGGAGTGGAATGGCTTGAAGATGATAATTAGCACCATGGAGCCTCAGGTGTCAAATGGA
CCGACATCCAATACAAGCAATGGACCCTCCAGCAACAACAGAAACTGTCCTTCTCCCATGCAGA
CAGGCGCTGCCACAGACGACAGCAAAACCAACCTCATCGTCAACTATTTACCCCAGAATATGAC
CCAAGAGGAATTCAGGAGTCTCTTTGGGAGCATTGGTGAAATCGAATCCTGCAAACTCGTGAGA
GACAAAATTACAGGACAGAGTTTAGGGTATGGATTTGTTAACTATATTGATCCAAAGGATGCAG
AGAAAGCCATCAACACTTTAAATGGACTCAGACTCCAGACCAAAACCATAAAGGTGTCGTACGC
CCGTCCGAGCTCGGCCTCAATCAGGGATGCTAACCTGTACGTTAGTGGCCTTCCCAAGACCATG
ACCCAGAAGGAGCTGGAGCAGCTTTTCTCTCAGTACGGTCGCATCATCACCTCACGCATCCTGG
TTGATCAAGTCACAGGAGTCTCTAGAGGGGTGGGATTCATCCGCTTTGATAAGAGGATTGAGGC
AGAAGAAGCCATCAAAGGGCTGAATGGCCAGAAGCCCAGCGGTGCTACAGAACCGATTACTGTG
AAGTTTGCCAACAACCCCAGCCAGAAGTCCAGCCAGGCCCTGCTCTCCCAGCTGTACCAGTCCC
CCAACAGGCGATACCCTGGCCCTCTCCACCACCAGGCTCAAAGATTCAGGCTGGACAATTTGCT
TAATATGGCCTATGGCGTAAAGAGACTGATGTCTGGACCAGTCCCCCCTTCTGCTTGTCCCCCC
AGGTTCTCCCCAATCACCATTGACGGGATGACAAGTCTTGTGGGAATGAACATCCCTGGTCACA
CAGGGACAGGCTGGTGCATCTTCGTCTATAACCTGTCCCCTGATTCTGATGAGAGTGTCCTCTG
GCAGCTCTTTGGCCCCTTTGGCGCAGTGAACAACGTCAAGGTCATCCGTGACTTCAACACCAAC
AAATGCAAGGGATTCGGCTTTGTCACCATGACCAACTACGATGAGGCAGCCATGGCCATCGCCA
GCCTCAATGGTTACCGCCTGGGAGACAGAGTGTTGCAAGTTTCCTTTAAAACCAACAAAGCCCA
CAAGTCCTGAATTTCTCACCCTTACTTATTAAAAAATATATATAAATATATACGAACAAAACAT
GCGCGCACACACATACACAAAAGAGAGAGACAAACTTTCCAAGGCTTATATTCAACCATGGACT
TTATAAGCCCGCGTTGCCTAAGTATTAAAACATTGGATTATCCTGAGGTGTACCAGGAAAGGAT
TTTATAATGCTTAGAAAAAAAGAAAAAAAAAACAAAAAAAATACCTTTGATGCATTGAATGTTC
TTTCATAGCTGTCGTTGTTGAATATAATATACATAGATAGCAATGTGCAGGGATTTTTACCCAG
CCAGCTAACTTTACTACCTTCCTTGAAGGTGGGTCTTTTTAAGATGACCATTCGCTCATTTGAA
GAAGAAAAACAAAAAACACAAAAAAATAACAATTTTTACAAAGTAATGGAATTCAAAGGAAGAA
AAAAAAGATTTTTCTTTTTTGCCAAAATGTTGATCCAATCAGATTGGTTAAAAACACCCCCACA
CAAATTAAAGAGGAATAATAAAAATTGCAAAAATTAAAAAAAAACTTTTGCAAATTTTTTTATT
TTTCCTTTTTTCTTTTATATCATGTGAACTAAAACAGTCTTCTGTTAGGGGACGGGGAAAGGGG
GTACCTGATGACATTAACAATTTAATAACATTAACATTGTTGCCAAAGAGGTGGTCTCTTTGCT
GAAAATGGGTTTCAAGAAAAATCTATTTTTATAAAATATAAAGAATTTTTACAAGAGAATCTGG
ATTTGAGAAAAAATATTTTGACTGGCTAATTTAGGGGAAATTGACAACTTTGTCGCGTTCATAC
TGCACTGGTAACTTTTTAGAGATCAAGATGTGTGTTTTAAACTGGATTCGTAGACTGTTTTTTG
AAGGATGGGCTATAAACAGATGATCTTCATATCTTTTCATAGCATGTAATAATAATAAAAAATA
TTAATTGCTAGGGGAAAGGAGTGTTCGTTCTACCCAGGGTACCACAGTTCCCCACAGTCAAAAC
CCAAAAGCAAGGAGATGAGTTGAAAGACAGTTTTTCTTTAAGTCATCAGTATGGGATGTCAGCA
GAACAAAAATTAAAAAGATTCATTTTCCTTTTAATCTAAAACTTCCTTAGTTTGAGCAGTAGGT
GCTACAAAATTATTTACATATCTTAGTATCATAGTTAAATGTAAACGTGTTTAGGAGAGGAAAA
AAAAAGATACATTTGCTTTACATTCATTAAGCAATTTTCTAATTCACTTTGTAGCCCATGCTGA
TAAAATTGGGCTGTGTGGGTACATTTGAAACACTGTTTATGTTGCTTGAAACACTTATTTATTT
AATTGCAGATGTGATGATGCCTATGGCCAAGATCAAATATAGCTAGATTGGCTAGACTACTTGT
TTGTTTACTTAAACTTTGGGAAGAAGCATATTATTGTGTCCTTCTGTTGTGTGTGTATGTGTAT
ATATAATATAAATATATATATAAAGTTATTTTTTCTTTGGTTAATTTATTATAAGTTGTAACAC
TTGGCTAGTTTTGTTTGTATATGTCTTAAAATGTTTTCTTATGATATTTAAGTGACAGTTAAAG
AGGTATCAAGGTAACTTGTGTAGAACTATTGTTTGATATATTGTCATGTTTGTTGTGAATATTT
TTTCTTACTGCACAGTAGAAAATTTTAAAAAAAATACTGGGTCTTTATTTTAATGTAATTCAGA
TTGGGGAAAACTAAACAGAGCTAAGGGAACAAAAGGACTGTGGGAGCAAACTCCCACATCCAGT
GCACTGATCATTTTAGTACGTTTGTGCTTTGTACGGTTATATATTTAAAACAAAAATAAAACAA
AAAAAAATCCAAGAGTTCATGCTCTTCCCTGGGTAATAGAAACAGTTACTCGCTATGCATAATC
TAGTTGATAGTAAAATTTGCTATTGCTTTTCTTGTCTTGTTATATAAAATCTTTTCAATACAAG
TTTAGTCTTAATGGTAATAAAACGTTATGGTTATTTATAACTTGTGCTTATTTTGTGCATTTTT
TCCCATGCTGAACCCACTAAGTGCATGTAGACAGGACTGTTGTTTGCACACTGAAGAGGCAAAC
TTTGTAGTAGTCGTTGTAGTGGTAGACAGATAACGGAAACCGAGGCTGCATCATAGACTACTCC
TTTAAATTTTTTTTCTATTTTTTTTCCTCTTTTCGGTTTTTGGAGAAAAATAAAAACACCAGAT
TTCAGTTCAGAGAACACTCGTTCAACATTCAGGGAAACCTTTATATGTCACCTGCTATGAATGA
ATGCAGTTTGCTGGCAAAGTTCTGATGCATTTGCTTAGCATTCATGGGAAAGGCATGCCAAAAT
CTCTTCTCTATGATGTGTTCAATCTGGGGGAAAAAAAAGGAAAAAAAATCTTAGGACCAGGCAG
TTGTATACTTTAGTTACAAATGAATGACTTCATGTTAATCTTGCTAGTTTAGATGATTTCTGAG
GGAAAGTATTGTAAATGTTTTTTTTTCATAATCTTGTTGTGTTTGAATTATTTGTACTTTATCT
GTCCAGACAATAAATGAAAGTGTGTAGAATGAA

hide sequence

RefSeq Acc Id:

XM_006238591 ⟹ XP_006238653

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	130,285,418 - 130,371,990 (-)	NCBI
mRatBN7.2	5	125,056,848 - 125,143,349 (-)	NCBI
Rnor_6.0	5	130,001,387 - 130,090,240 (-)	NCBI
Rnor_5.0	5	133,837,537 - 133,979,844 (-)	NCBI

Sequence:

show sequence

CAGCCATGTTTGGGGCAGGCTGCTCTTGCAAAGGGAGCAGTACATATAACAGGAGGCTACTGTG
TGAGAGATAAGGGGAAAATTCAGCTCACTGACTAGAGGTTTTAATGTGCGAACTCTGGGGAAAT
AATATATTGACTGTTCCGTGGTGCGCAAGAAAATTGAAGAACCCTTTGCAGACGGAGTGCTTTG
CAAAGGATTCTATCTGTTTCTCTTAAAACAAAATCTGTGGCAAGATGTTTGAAATCAGCAGGAC
GCTTAATGCTGCTTTATTAAATAATGAGATAATTAGCACCATGGAGCCTCAGGTGTCAAATGGA
CCGACATCCAATACAAGCAATGGACCCTCCAGCAACAACAGAAACTGTCCTTCTCCCATGCAGA
CAGGCGCTGCCACAGACGACAGCAAAACCAACCTCATCGTCAACTATTTACCCCAGAATATGAC
CCAAGAGGAATTCAGGAGTCTCTTTGGGAGCATTGGTGAAATCGAATCCTGCAAACTCGTGAGA
GACAAAATTACAGGACAGAGTTTAGGGTATGGATTTGTTAACTATATTGATCCAAAGGATGCAG
AGAAAGCCATCAACACTTTAAATGGACTCAGACTCCAGACCAAAACCATAAAGGTGTCGTACGC
CCGTCCGAGCTCGGCCTCAATCAGGGATGCTAACCTGTACGTTAGTGGCCTTCCCAAGACCATG
ACCCAGAAGGAGCTGGAGCAGCTTTTCTCTCAGTACGGTCGCATCATCACCTCACGCATCCTGG
TTGATCAAGTCACAGGAGTCTCTAGAGGGGTGGGATTCATCCGCTTTGATAAGAGGATTGAGGC
AGAAGAAGCCATCAAAGGGCTGAATGGCCAGAAGCCCAGCGGTGCTACAGAACCGATTACTGTG
AAGTTTGCCAACAACCCCAGCCAGAAGTCCAGCCAGGCCCTGCTCTCCCAGCTGTACCAGTCCC
CCAACAGGCGATACCCTGGCCCTCTCCACCACCAGGCTCAAAGATTCAGGCTGGACAATTTGCT
TAATATGGCCTATGGCGTAAAGAGACTGATGTCTGGACCAGTCCCCCCTTCTGCTTGTCCCCCC
AGGTTCTCCCCAATCACCATTGACGGGATGACAAGTCTTGTGGGAATGAACATCCCTGGTCACA
CAGGGACAGGCTGGTGCATCTTCGTCTATAACCTGTCCCCTGATTCTGATGAGAGTGTCCTCTG
GCAGCTCTTTGGCCCCTTTGGCGCAGTGAACAACGTCAAGGTCATCCGTGACTTCAACACCAAC
AAATGCAAGGGATTCGGCTTTGTCACCATGACCAACTACGATGAGGCAGCCATGGCCATCGCCA
GCCTCAATGGTTACCGCCTGGGAGACAGAGTGTTGCAAGTTTCCTTTAAAACCAACAAAGCCCA
CAAGTCCTGAATTTCTCACCCTTACTTATTAAAAAATATATATAAATATATACGAACAAAACAT
GCGCGCACACACATACACAAAAGAGAGAGACAAACTTTCCAAGGCTTATATTCAACCATGGACT
TTATAAGCCCGCGTTGCCTAAGTATTAAAACATTGGATTATCCTGAGGTGTACCAGGAAAGGAT
TTTATAATGCTTAGAAAAAAAGAAAAAAAAAACAAAAAAAATACCTTTGATGCATTGAATGTTC
TTTCATAGCTGTCGTTGTTGAATATAATATACATAGATAGCAATGTGCAGGGATTTTTACCCAG
CCAGCTAACTTTACTACCTTCCTTGAAGGTGGGTCTTTTTAAGATGACCATTCGCTCATTTGAA
GAAGAAAAACAAAAAACACAAAAAAATAACAATTTTTACAAAGTAATGGAATTCAAAGGAAGAA
AAAAAAGATTTTTCTTTTTTGCCAAAATGTTGATCCAATCAGATTGGTTAAAAACACCCCCACA
CAAATTAAAGAGGAATAATAAAAATTGCAAAAATTAAAAAAAAACTTTTGCAAATTTTTTTATT
TTTCCTTTTTTCTTTTATATCATGTGAACTAAAACAGTCTTCTGTTAGGGGACGGGGAAAGGGG
GTACCTGATGACATTAACAATTTAATAACATTAACATTGTTGCCAAAGAGGTGGTCTCTTTGCT
GAAAATGGGTTTCAAGAAAAATCTATTTTTATAAAATATAAAGAATTTTTACAAGAGAATCTGG
ATTTGAGAAAAAATATTTTGACTGGCTAATTTAGGGGAAATTGACAACTTTGTCGCGTTCATAC
TGCACTGGTAACTTTTTAGAGATCAAGATGTGTGTTTTAAACTGGATTCGTAGACTGTTTTTTG
AAGGATGGGCTATAAACAGATGATCTTCATATCTTTTCATAGCATGTAATAATAATAAAAAATA
TTAATTGCTAGGGGAAAGGAGTGTTCGTTCTACCCAGGGTACCACAGTTCCCCACAGTCAAAAC
CCAAAAGCAAGGAGATGAGTTGAAAGACAGTTTTTCTTTAAGTCATCAGTATGGGATGTCAGCA
GAACAAAAATTAAAAAGATTCATTTTCCTTTTAATCTAAAACTTCCTTAGTTTGAGCAGTAGGT
GCTACAAAATTATTTACATATCTTAGTATCATAGTTAAATGTAAACGTGTTTAGGAGAGGAAAA
AAAAAGATACATTTGCTTTACATTCATTAAGCAATTTTCTAATTCACTTTGTAGCCCATGCTGA
TAAAATTGGGCTGTGTGGGTACATTTGAAACACTGTTTATGTTGCTTGAAACACTTATTTATTT
AATTGCAGATGTGATGATGCCTATGGCCAAGATCAAATATAGCTAGATTGGCTAGACTACTTGT
TTGTTTACTTAAACTTTGGGAAGAAGCATATTATTGTGTCCTTCTGTTGTGTGTGTATGTGTAT
ATATAATATAAATATATATATAAAGTTATTTTTTCTTTGGTTAATTTATTATAAGTTGTAACAC
TTGGCTAGTTTTGTTTGTATATGTCTTAAAATGTTTTCTTATGATATTTAAGTGACAGTTAAAG
AGGTATCAAGGTAACTTGTGTAGAACTATTGTTTGATATATTGTCATGTTTGTTGTGAATATTT
TTTCTTACTGCACAGTAGAAAATTTTAAAAAAAATACTGGGTCTTTATTTTAATGTAATTCAGA
TTGGGGAAAACTAAACAGAGCTAAGGGAACAAAAGGACTGTGGGAGCAAACTCCCACATCCAGT
GCACTGATCATTTTAGTACGTTTGTGCTTTGTACGGTTATATATTTAAAACAAAAATAAAACAA
AAAAAAATCCAAGAGTTCATGCTCTTCCCTGGGTAATAGAAACAGTTACTCGCTATGCATAATC
TAGTTGATAGTAAAATTTGCTATTGCTTTTCTTGTCTTGTTATATAAAATCTTTTCAATACAAG
TTTAGTCTTAATGGTAATAAAACGTTATGGTTATTTATAACTTGTGCTTATTTTGTGCATTTTT
TCCCATGCTGAACCCACTAAGTGCATGTAGACAGGACTGTTGTTTGCACACTGAAGAGGCAAAC
TTTGTAGTAGTCGTTGTAGTGGTAGACAGATAACGGAAACCGAGGCTGCATCATAGACTACTCC
TTTAAATTTTTTTTCTATTTTTTTTCCTCTTTTCGGTTTTTGGAGAAAAATAAAAACACCAGAT
TTCAGTTCAGAGAACACTCGTTCAACATTCAGGGAAACCTTTATATGTCACCTGCTATGAATGA
ATGCAGTTTGCTGGCAAAGTTCTGATGCATTTGCTTAGCATTCATGGGAAAGGCATGCCAAAAT
CTCTTCTCTATGATGTGTTCAATCTGGGGGAAAAAAAAGGAAAAAAAATCTTAGGACCAGGCAG
TTGTATACTTTAGTTACAAATGAATGACTTCATGTTAATCTTGCTAGTTTAGATGATTTCTGAG
GGAAAGTATTGTAAATGTTTTTTTTTCATAATCTTGTTGTGTTTGAATTATTTGTACTTTATCT
GTCCAGACAATAAATGAAAGTGTGTAGAATGAA

hide sequence

RefSeq Acc Id:

XM_006238593 ⟹ XP_006238655

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	130,285,418 - 130,429,106 (-)	NCBI
mRatBN7.2	5	125,056,848 - 125,200,543 (-)	NCBI
Rnor_6.0	5	130,001,387 - 130,144,557 (-)	NCBI
Rnor_5.0	5	133,837,537 - 133,979,844 (-)	NCBI

Sequence:

show sequence

GCGCCCGCCCGGGCCTCCACCGCCGCCCCCGGACCCCGCCTCCGCGAAGATGCGGCTCCAGAAC
CAGATAATTAGCACCATGGAGCCTCAGGTGTCAAATGGACCGACATCCAATACAAGCAATGGAC
CCTCCAGCAACAACAGAAACTGTCCTTCTCCCATGCAGACAGGCGCTGCCACAGACGACAGCAA
AACCAACCTCATCGTCAACTATTTACCCCAGAATATGACCCAAGAGGAATTCAGGAGTCTCTTT
GGGAGCATTGGTGAAATCGAATCCTGCAAACTCGTGAGAGACAAAATTACAGGACAGAGTTTAG
GGTATGGATTTGTTAACTATATTGATCCAAAGGATGCAGAGAAAGCCATCAACACTTTAAATGG
ACTCAGACTCCAGACCAAAACCATAAAGGTGTCGTACGCCCGTCCGAGCTCGGCCTCAATCAGG
GATGCTAACCTGTACGTTAGTGGCCTTCCCAAGACCATGACCCAGAAGGAGCTGGAGCAGCTTT
TCTCTCAGTACGGTCGCATCATCACCTCACGCATCCTGGTTGATCAAGTCACAGGAGTCTCTAG
AGGGGTGGGATTCATCCGCTTTGATAAGAGGATTGAGGCAGAAGAAGCCATCAAAGGGCTGAAT
GGCCAGAAGCCCAGCGGTGCTACAGAACCGATTACTGTGAAGTTTGCCAACAACCCCAGCCAGA
AGTCCAGCCAGGCCCTGCTCTCCCAGCTGTACCAGTCCCCCAACAGGCGATACCCTGGCCCTCT
CCACCACCAGGCTCAAAGATTCAGGCTGGACAATTTGCTTAATATGGCCTATGGCGTAAAGAGA
CTGATGTCTGGACCAGTCCCCCCTTCTGCTTGTCCCCCCAGGTTCTCCCCAATCACCATTGACG
GGATGACAAGTCTTGTGGGAATGAACATCCCTGGTCACACAGGGACAGGCTGGTGCATCTTCGT
CTATAACCTGTCCCCTGATTCTGATGAGAGTGTCCTCTGGCAGCTCTTTGGCCCCTTTGGCGCA
GTGAACAACGTCAAGGTCATCCGTGACTTCAACACCAACAAATGCAAGGGATTCGGCTTTGTCA
CCATGACCAACTACGATGAGGCAGCCATGGCCATCGCCAGCCTCAATGGTTACCGCCTGGGAGA
CAGAGTGTTGCAAGTTTCCTTTAAAACCAACAAAGCCCACAAGTCCTGAATTTCTCACCCTTAC
TTATTAAAAAATATATATAAATATATACGAACAAAACATGCGCGCACACACATACACAAAAGAG
AGAGACAAACTTTCCAAGGCTTATATTCAACCATGGACTTTATAAGCCCGCGTTGCCTAAGTAT
TAAAACATTGGATTATCCTGAGGTGTACCAGGAAAGGATTTTATAATGCTTAGAAAAAAAGAAA
AAAAAAACAAAAAAAATACCTTTGATGCATTGAATGTTCTTTCATAGCTGTCGTTGTTGAATAT
AATATACATAGATAGCAATGTGCAGGGATTTTTACCCAGCCAGCTAACTTTACTACCTTCCTTG
AAGGTGGGTCTTTTTAAGATGACCATTCGCTCATTTGAAGAAGAAAAACAAAAAACACAAAAAA
ATAACAATTTTTACAAAGTAATGGAATTCAAAGGAAGAAAAAAAAGATTTTTCTTTTTTGCCAA
AATGTTGATCCAATCAGATTGGTTAAAAACACCCCCACACAAATTAAAGAGGAATAATAAAAAT
TGCAAAAATTAAAAAAAAACTTTTGCAAATTTTTTTATTTTTCCTTTTTTCTTTTATATCATGT
GAACTAAAACAGTCTTCTGTTAGGGGACGGGGAAAGGGGGTACCTGATGACATTAACAATTTAA
TAACATTAACATTGTTGCCAAAGAGGTGGTCTCTTTGCTGAAAATGGGTTTCAAGAAAAATCTA
TTTTTATAAAATATAAAGAATTTTTACAAGAGAATCTGGATTTGAGAAAAAATATTTTGACTGG
CTAATTTAGGGGAAATTGACAACTTTGTCGCGTTCATACTGCACTGGTAACTTTTTAGAGATCA
AGATGTGTGTTTTAAACTGGATTCGTAGACTGTTTTTTGAAGGATGGGCTATAAACAGATGATC
TTCATATCTTTTCATAGCATGTAATAATAATAAAAAATATTAATTGCTAGGGGAAAGGAGTGTT
CGTTCTACCCAGGGTACCACAGTTCCCCACAGTCAAAACCCAAAAGCAAGGAGATGAGTTGAAA
GACAGTTTTTCTTTAAGTCATCAGTATGGGATGTCAGCAGAACAAAAATTAAAAAGATTCATTT
TCCTTTTAATCTAAAACTTCCTTAGTTTGAGCAGTAGGTGCTACAAAATTATTTACATATCTTA
GTATCATAGTTAAATGTAAACGTGTTTAGGAGAGGAAAAAAAAAGATACATTTGCTTTACATTC
ATTAAGCAATTTTCTAATTCACTTTGTAGCCCATGCTGATAAAATTGGGCTGTGTGGGTACATT
TGAAACACTGTTTATGTTGCTTGAAACACTTATTTATTTAATTGCAGATGTGATGATGCCTATG
GCCAAGATCAAATATAGCTAGATTGGCTAGACTACTTGTTTGTTTACTTAAACTTTGGGAAGAA
GCATATTATTGTGTCCTTCTGTTGTGTGTGTATGTGTATATATAATATAAATATATATATAAAG
TTATTTTTTCTTTGGTTAATTTATTATAAGTTGTAACACTTGGCTAGTTTTGTTTGTATATGTC
TTAAAATGTTTTCTTATGATATTTAAGTGACAGTTAAAGAGGTATCAAGGTAACTTGTGTAGAA
CTATTGTTTGATATATTGTCATGTTTGTTGTGAATATTTTTTCTTACTGCACAGTAGAAAATTT
TAAAAAAAATACTGGGTCTTTATTTTAATGTAATTCAGATTGGGGAAAACTAAACAGAGCTAAG
GGAACAAAAGGACTGTGGGAGCAAACTCCCACATCCAGTGCACTGATCATTTTAGTACGTTTGT
GCTTTGTACGGTTATATATTTAAAACAAAAATAAAACAAAAAAAAATCCAAGAGTTCATGCTCT
TCCCTGGGTAATAGAAACAGTTACTCGCTATGCATAATCTAGTTGATAGTAAAATTTGCTATTG
CTTTTCTTGTCTTGTTATATAAAATCTTTTCAATACAAGTTTAGTCTTAATGGTAATAAAACGT
TATGGTTATTTATAACTTGTGCTTATTTTGTGCATTTTTTCCCATGCTGAACCCACTAAGTGCA
TGTAGACAGGACTGTTGTTTGCACACTGAAGAGGCAAACTTTGTAGTAGTCGTTGTAGTGGTAG
ACAGATAACGGAAACCGAGGCTGCATCATAGACTACTCCTTTAAATTTTTTTTCTATTTTTTTT
CCTCTTTTCGGTTTTTGGAGAAAAATAAAAACACCAGATTTCAGTTCAGAGAACACTCGTTCAA
CATTCAGGGAAACCTTTATATGTCACCTGCTATGAATGAATGCAGTTTGCTGGCAAAGTTCTGA
TGCATTTGCTTAGCATTCATGGGAAAGGCATGCCAAAATCTCTTCTCTATGATGTGTTCAATCT
GGGGGAAAAAAAAGGAAAAAAAATCTTAGGACCAGGCAGTTGTATACTTTAGTTACAAATGAAT
GACTTCATGTTAATCTTGCTAGTTTAGATGATTTCTGAGGGAAAGTATTGTAAATGTTTTTTTT
TCATAATCTTGTTGTGTTTGAATTATTTGTACTTTATCTGTCCAGACAATAAATGAAAGTGTGT
AGAATGAA

hide sequence

RefSeq Acc Id:

XM_006238594 ⟹ XP_006238656

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	130,285,418 - 130,368,595 (-)	NCBI
mRatBN7.2	5	125,056,848 - 125,139,977 (-)	NCBI
Rnor_6.0	5	130,001,387 - 130,086,674 (-)	NCBI
Rnor_5.0	5	133,837,537 - 133,979,844 (-)	NCBI

Sequence:

show sequence

AAAAGGGGAAGCTTCGAGCCAATTTCAGCAAGGCTCTGTTCAGTTGTTCTTATCTACATCCTAG
AATCAGGGGTTTCAGCTCACTGCGCCTTTTCTTCCTCTCTCTCTTTTTTCCCCCTCTTTCTTTC
CCACCCCACCCCCTCCCAATAATAGATTTACTTTACAATCATCCACACTGTGTTCTGTGGATCT
GTAATATATATAACAATAGTAGTCATTTTCAAATTATATCCTGAAACCTTTGCAAATTTTAAGA
GAAGAGTCGAAGCGCTGCGAGACCCAATATTTGCCAATAAGAATGGTTATGATAATTAGCACCA
TGGAGCCTCAGGTGTCAAATGGACCGACATCCAATACAAGCAATGGACCCTCCAGCAACAACAG
AAACTGTCCTTCTCCCATGCAGACAGGCGCTGCCACAGACGACAGCAAAACCAACCTCATCGTC
AACTATTTACCCCAGAATATGACCCAAGAGGAATTCAGGAGTCTCTTTGGGAGCATTGGTGAAA
TCGAATCCTGCAAACTCGTGAGAGACAAAATTACAGGACAGAGTTTAGGGTATGGATTTGTTAA
CTATATTGATCCAAAGGATGCAGAGAAAGCCATCAACACTTTAAATGGACTCAGACTCCAGACC
AAAACCATAAAGGTGTCGTACGCCCGTCCGAGCTCGGCCTCAATCAGGGATGCTAACCTGTACG
TTAGTGGCCTTCCCAAGACCATGACCCAGAAGGAGCTGGAGCAGCTTTTCTCTCAGTACGGTCG
CATCATCACCTCACGCATCCTGGTTGATCAAGTCACAGGAGTCTCTAGAGGGGTGGGATTCATC
CGCTTTGATAAGAGGATTGAGGCAGAAGAAGCCATCAAAGGGCTGAATGGCCAGAAGCCCAGCG
GTGCTACAGAACCGATTACTGTGAAGTTTGCCAACAACCCCAGCCAGAAGTCCAGCCAGGCCCT
GCTCTCCCAGCTGTACCAGTCCCCCAACAGGCGATACCCTGGCCCTCTCCACCACCAGGCTCAA
AGATTCAGGCTGGACAATTTGCTTAATATGGCCTATGGCGTAAAGAGACTGATGTCTGGACCAG
TCCCCCCTTCTGCTTGTCCCCCCAGGTTCTCCCCAATCACCATTGACGGGATGACAAGTCTTGT
GGGAATGAACATCCCTGGTCACACAGGGACAGGCTGGTGCATCTTCGTCTATAACCTGTCCCCT
GATTCTGATGAGAGTGTCCTCTGGCAGCTCTTTGGCCCCTTTGGCGCAGTGAACAACGTCAAGG
TCATCCGTGACTTCAACACCAACAAATGCAAGGGATTCGGCTTTGTCACCATGACCAACTACGA
TGAGGCAGCCATGGCCATCGCCAGCCTCAATGGTTACCGCCTGGGAGACAGAGTGTTGCAAGTT
TCCTTTAAAACCAACAAAGCCCACAAGTCCTGAATTTCTCACCCTTACTTATTAAAAAATATAT
ATAAATATATACGAACAAAACATGCGCGCACACACATACACAAAAGAGAGAGACAAACTTTCCA
AGGCTTATATTCAACCATGGACTTTATAAGCCCGCGTTGCCTAAGTATTAAAACATTGGATTAT
CCTGAGGTGTACCAGGAAAGGATTTTATAATGCTTAGAAAAAAAGAAAAAAAAAACAAAAAAAA
TACCTTTGATGCATTGAATGTTCTTTCATAGCTGTCGTTGTTGAATATAATATACATAGATAGC
AATGTGCAGGGATTTTTACCCAGCCAGCTAACTTTACTACCTTCCTTGAAGGTGGGTCTTTTTA
AGATGACCATTCGCTCATTTGAAGAAGAAAAACAAAAAACACAAAAAAATAACAATTTTTACAA
AGTAATGGAATTCAAAGGAAGAAAAAAAAGATTTTTCTTTTTTGCCAAAATGTTGATCCAATCA
GATTGGTTAAAAACACCCCCACACAAATTAAAGAGGAATAATAAAAATTGCAAAAATTAAAAAA
AAACTTTTGCAAATTTTTTTATTTTTCCTTTTTTCTTTTATATCATGTGAACTAAAACAGTCTT
CTGTTAGGGGACGGGGAAAGGGGGTACCTGATGACATTAACAATTTAATAACATTAACATTGTT
GCCAAAGAGGTGGTCTCTTTGCTGAAAATGGGTTTCAAGAAAAATCTATTTTTATAAAATATAA
AGAATTTTTACAAGAGAATCTGGATTTGAGAAAAAATATTTTGACTGGCTAATTTAGGGGAAAT
TGACAACTTTGTCGCGTTCATACTGCACTGGTAACTTTTTAGAGATCAAGATGTGTGTTTTAAA
CTGGATTCGTAGACTGTTTTTTGAAGGATGGGCTATAAACAGATGATCTTCATATCTTTTCATA
GCATGTAATAATAATAAAAAATATTAATTGCTAGGGGAAAGGAGTGTTCGTTCTACCCAGGGTA
CCACAGTTCCCCACAGTCAAAACCCAAAAGCAAGGAGATGAGTTGAAAGACAGTTTTTCTTTAA
GTCATCAGTATGGGATGTCAGCAGAACAAAAATTAAAAAGATTCATTTTCCTTTTAATCTAAAA
CTTCCTTAGTTTGAGCAGTAGGTGCTACAAAATTATTTACATATCTTAGTATCATAGTTAAATG
TAAACGTGTTTAGGAGAGGAAAAAAAAAGATACATTTGCTTTACATTCATTAAGCAATTTTCTA
ATTCACTTTGTAGCCCATGCTGATAAAATTGGGCTGTGTGGGTACATTTGAAACACTGTTTATG
TTGCTTGAAACACTTATTTATTTAATTGCAGATGTGATGATGCCTATGGCCAAGATCAAATATA
GCTAGATTGGCTAGACTACTTGTTTGTTTACTTAAACTTTGGGAAGAAGCATATTATTGTGTCC
TTCTGTTGTGTGTGTATGTGTATATATAATATAAATATATATATAAAGTTATTTTTTCTTTGGT
TAATTTATTATAAGTTGTAACACTTGGCTAGTTTTGTTTGTATATGTCTTAAAATGTTTTCTTA
TGATATTTAAGTGACAGTTAAAGAGGTATCAAGGTAACTTGTGTAGAACTATTGTTTGATATAT
TGTCATGTTTGTTGTGAATATTTTTTCTTACTGCACAGTAGAAAATTTTAAAAAAAATACTGGG
TCTTTATTTTAATGTAATTCAGATTGGGGAAAACTAAACAGAGCTAAGGGAACAAAAGGACTGT
GGGAGCAAACTCCCACATCCAGTGCACTGATCATTTTAGTACGTTTGTGCTTTGTACGGTTATA
TATTTAAAACAAAAATAAAACAAAAAAAAATCCAAGAGTTCATGCTCTTCCCTGGGTAATAGAA
ACAGTTACTCGCTATGCATAATCTAGTTGATAGTAAAATTTGCTATTGCTTTTCTTGTCTTGTT
ATATAAAATCTTTTCAATACAAGTTTAGTCTTAATGGTAATAAAACGTTATGGTTATTTATAAC
TTGTGCTTATTTTGTGCATTTTTTCCCATGCTGAACCCACTAAGTGCATGTAGACAGGACTGTT
GTTTGCACACTGAAGAGGCAAACTTTGTAGTAGTCGTTGTAGTGGTAGACAGATAACGGAAACC
GAGGCTGCATCATAGACTACTCCTTTAAATTTTTTTTCTATTTTTTTTCCTCTTTTCGGTTTTT
GGAGAAAAATAAAAACACCAGATTTCAGTTCAGAGAACACTCGTTCAACATTCAGGGAAACCTT
TATATGTCACCTGCTATGAATGAATGCAGTTTGCTGGCAAAGTTCTGATGCATTTGCTTAGCAT
TCATGGGAAAGGCATGCCAAAATCTCTTCTCTATGATGTGTTCAATCTGGGGGAAAAAAAAGGA
AAAAAAATCTTAGGACCAGGCAGTTGTATACTTTAGTTACAAATGAATGACTTCATGTTAATCT
TGCTAGTTTAGATGATTTCTGAGGGAAAGTATTGTAAATGTTTTTTTTTCATAATCTTGTTGTG
TTTGAATTATTTGTACTTTATCTGTCCAGACAATAAATGAAAGTGTGTAGAATGAA

hide sequence

RefSeq Acc Id:

XM_039110515 ⟹ XP_038966443

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	130,285,418 - 130,371,970 (-)	NCBI
mRatBN7.2	5	125,056,848 - 125,143,348 (-)	NCBI

RefSeq Acc Id:

XM_039110516 ⟹ XP_038966444

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	130,285,418 - 130,371,899 (-)	NCBI
mRatBN7.2	5	125,056,848 - 125,143,350 (-)	NCBI

RefSeq Acc Id:

XM_063288153 ⟹ XP_063144223

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	130,285,418 - 130,367,910 (-)	NCBI

RefSeq Acc Id:

XM_063288154 ⟹ XP_063144224

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	130,285,418 - 130,429,106 (-)	NCBI

RefSeq Acc Id:

XM_063288155 ⟹ XP_063144225

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	130,285,418 - 130,368,556 (-)	NCBI

RefSeq Acc Id:

XM_063288156 ⟹ XP_063144226

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	130,285,418 - 130,367,911 (-)	NCBI

RefSeq Acc Id:

XM_063288157 ⟹ XP_063144227

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	130,285,418 - 130,368,545 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001071119	(Get FASTA)	NCBI Sequence Viewer
	XP_006238653	(Get FASTA)	NCBI Sequence Viewer
	XP_006238655	(Get FASTA)	NCBI Sequence Viewer
	XP_006238656	(Get FASTA)	NCBI Sequence Viewer
	XP_038966443	(Get FASTA)	NCBI Sequence Viewer
	XP_038966444	(Get FASTA)	NCBI Sequence Viewer
	XP_063144223	(Get FASTA)	NCBI Sequence Viewer
	XP_063144224	(Get FASTA)	NCBI Sequence Viewer
	XP_063144225	(Get FASTA)	NCBI Sequence Viewer
	XP_063144226	(Get FASTA)	NCBI Sequence Viewer
	XP_063144227	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB50733	(Get FASTA)	NCBI Sequence Viewer
	AAI58559	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000037614
	ENSRNOP00000037614.4
	ENSRNOP00000076930.1
	ENSRNOP00000079852
	ENSRNOP00000079852.1
	ENSRNOP00000086190
	ENSRNOP00000086190.1
	ENSRNOP00000090516.1
	ENSRNOP00000093173.1
	ENSRNOP00000095267
	ENSRNOP00000095267.1
	ENSRNOP00000096475
	ENSRNOP00000096475.1
	ENSRNOP00055041401
	ENSRNOP00060036734
	ENSRNOP00065038029
GenBank Protein	O09032	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001071119 ⟸ NM_001077651

- UniProtKB:

O09032 (UniProtKB/Swiss-Prot), A0A140TAF2 (UniProtKB/TrEMBL), A0A8I5ZNE4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEWNGLKMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQ
EEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR
PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE
EAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLN
MAYGVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQ
LFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK
S

hide sequence

RefSeq Acc Id:	XP_006238655 ⟸ XM_006238593
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZNE4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRLQNQIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEE FRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA IKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMA YGVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLF GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHKS hide sequence

RefSeq Acc Id:	XP_006238653 ⟸ XM_006238591
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZNE4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFEISRTLNAALLNNEIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGAATDDSKTNLIVN YLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK TIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR FDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQR FRLDNLLNMAYGVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPD SDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS FKTNKAHKS hide sequence

RefSeq Acc Id:	XP_006238656 ⟸ XM_006238594
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6APY9 (UniProtKB/TrEMBL), A0A8I5ZNE4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVMIISTMEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRS LFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG LNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGV KRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPF GAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHKS hide sequence

RefSeq Acc Id:

ENSRNOP00000037614 ⟸ ENSRNOT00000035252

RefSeq Acc Id:	XP_038966444 ⟸ XM_039110516
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I6AV49 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038966443 ⟸ XM_039110515
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6AV49 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000076930 ⟸ ENSRNOT00000101036

RefSeq Acc Id:

ENSRNOP00000096475 ⟸ ENSRNOT00000098972

RefSeq Acc Id:

ENSRNOP00000090516 ⟸ ENSRNOT00000108484

RefSeq Acc Id:

ENSRNOP00000093173 ⟸ ENSRNOT00000110462

RefSeq Acc Id:

ENSRNOP00000086190 ⟸ ENSRNOT00000109917

RefSeq Acc Id:

ENSRNOP00000095267 ⟸ ENSRNOT00000101531

RefSeq Acc Id:

ENSRNOP00000079852 ⟸ ENSRNOT00000104896

RefSeq Acc Id:	XP_063144224 ⟸ XM_063288154
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063144225 ⟸ XM_063288155
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_063144227 ⟸ XM_063288157
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_063144226 ⟸ XM_063288156
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_063144223 ⟸ XM_063288153
- Peptide Label:	isoform X5

Protein Domains

RRM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-O09032-F1-model_v2	AlphaFold	O09032	1-385	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1560027	AgrOrtholog
BioCyc Gene	G2FUF-40341	BioCyc
Ensembl Genes	ENSRNOG00000023601	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055028847	UniProtKB/Swiss-Prot
	ENSRNOG00060025167	UniProtKB/Swiss-Prot
	ENSRNOG00065026607	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000035252	ENTREZGENE
	ENSRNOT00000035252.4	UniProtKB/Swiss-Prot
	ENSRNOT00000098972.1	UniProtKB/TrEMBL
	ENSRNOT00000101036.1	UniProtKB/TrEMBL
	ENSRNOT00000101531.1	UniProtKB/TrEMBL
	ENSRNOT00000104896.1	UniProtKB/TrEMBL
	ENSRNOT00000108484.1	UniProtKB/TrEMBL
	ENSRNOT00000109917.1	UniProtKB/TrEMBL
	ENSRNOT00000110462.1	UniProtKB/TrEMBL
	ENSRNOT00055050315	UniProtKB/Swiss-Prot
	ENSRNOT00060044307	UniProtKB/Swiss-Prot
	ENSRNOT00065046366	UniProtKB/Swiss-Prot
Gene3D-CATH	3.30.70.330	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:8371379	IMAGE-MGC_LOAD
InterPro	ELAD_HU_SF	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	HuD_RRM3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Hud_Sxl_RNA	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Nucleotide-bd_a/b_plait_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RRM_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:432358	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:187234	IMAGE-MGC_LOAD
NCBI Gene	432358	ENTREZGENE
PANTHER	ELAV-LIKE PROTEIN 4	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	RRM_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Elavl4	PhenoGen
PRINTS	HUDSXLRNA	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	RRM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000023601	RatGTEx
	ENSRNOG00055028847	RatGTEx
	ENSRNOG00060025167	RatGTEx
	ENSRNOG00065026607	RatGTEx
SMART	RRM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF54928	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A140TAF2	ENTREZGENE
	A0A8I5Y0H9_RAT	UniProtKB/TrEMBL
	A0A8I5ZNE4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A344_RAT	UniProtKB/TrEMBL
	A0A8I6ADY8_RAT	UniProtKB/TrEMBL
	A0A8I6AI53_RAT	UniProtKB/TrEMBL
	A0A8I6APY9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AV49	ENTREZGENE, UniProtKB/TrEMBL
	B0BMT8_RAT	UniProtKB/TrEMBL
	ELAV4_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary	A0A140TAF2	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-09-09	Elavl4	ELAV like RNA binding protein 4	Elavl4	ELAV like neuron-specific RNA binding protein 4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-11-11	Elavl4	ELAV like neuron-specific RNA binding protein 4	Elavl4	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-07-16	Elavl4	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4	Elavl4	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-01-09	Elavl4	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	RGD1561943_predicted	similar to ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D) (predicted)	Data merged from RGD:1561943	1643240	APPROVED
2006-03-10	RGD1561943_predicted	similar to ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D) (predicted)			Name updated	1299863	APPROVED
2006-03-07	RGD1561943_predicted	similar to ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D) (predicted)	LOC298359	similar to ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	Elavl4	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-02-09	LOC298359	similar to ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

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MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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